data_2SEC # _model_server_result.job_id RZfh4OjMYWfiFnmWaJhcGA _model_server_result.datetime_utc '2024-12-04 10:07:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2sec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":277}' # _entry.id 2SEC # _exptl.entry_id 2SEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 69.51 _cell.angle_beta 83.67 _cell.angle_gamma 75.32 _cell.entry_id 2SEC _cell.length_a 38.31 _cell.length_b 41.41 _cell.length_c 56.5 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2SEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 2 E GLN 2 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A O ALA 37 E ALA 37 1_555 E CA CA . E CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc3 A O HIS 39 E HIS 39 1_555 E CA CA . E CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc4 A OD1 ASP 41 E ASP 41 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 A OD2 ASP 41 E ASP 41 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc6 A O LEU 42 E LEU 42 1_555 E CA CA . E CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc7 A O LEU 74 E LEU 75 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc8 A ND2 ASN 76 E ASN 77 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc9 A O THR 78 E THR 79 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc10 A O VAL 80 E VAL 81 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc11 A O ALA 168 E ALA 169 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc12 A O TYR 170 E TYR 171 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc13 A O VAL 173 E VAL 174 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc14 D CA CA . E CA 277 1_555 F O HOH . E HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc15 D CA CA . E CA 277 1_555 F O HOH . E HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc16 E CA CA . E CA 278 1_555 F O HOH . E HOH 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? metalc ? metalc17 E CA CA . E CA 278 1_555 F O HOH . E HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2SEC _atom_sites.fract_transf_matrix[1][1] 0.026103 _atom_sites.fract_transf_matrix[1][2] -0.006838 _atom_sites.fract_transf_matrix[1][3] -0.000642 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024964 _atom_sites.fract_transf_matrix[2][3] -0.008876 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA E 1 276 1 CA CA . D 3 CA E 1 277 2 CA CA . E 3 CA E 1 278 3 CA CA . F 4 HOH E 1 342 342 HOH HOH . F 4 HOH E 2 343 343 HOH HOH . F 4 HOH E 3 344 344 HOH HOH . F 4 HOH E 4 346 346 HOH HOH . F 4 HOH E 5 347 347 HOH HOH . F 4 HOH E 6 348 348 HOH HOH . F 4 HOH E 7 349 349 HOH HOH . F 4 HOH E 8 350 350 HOH HOH . F 4 HOH E 9 351 351 HOH HOH . F 4 HOH E 10 353 353 HOH HOH . F 4 HOH E 11 354 354 HOH HOH . F 4 HOH E 12 355 355 HOH HOH . F 4 HOH E 13 356 356 HOH HOH . F 4 HOH E 14 357 357 HOH HOH . F 4 HOH E 15 358 358 HOH HOH . F 4 HOH E 16 359 359 HOH HOH . F 4 HOH E 17 360 360 HOH HOH . F 4 HOH E 18 361 361 HOH HOH . F 4 HOH E 19 362 362 HOH HOH . F 4 HOH E 20 363 363 HOH HOH . F 4 HOH E 21 365 365 HOH HOH . F 4 HOH E 22 367 367 HOH HOH . F 4 HOH E 23 368 368 HOH HOH . F 4 HOH E 24 369 369 HOH HOH . F 4 HOH E 25 371 371 HOH HOH . F 4 HOH E 26 373 373 HOH HOH . F 4 HOH E 27 374 374 HOH HOH . F 4 HOH E 28 375 375 HOH HOH . F 4 HOH E 29 376 376 HOH HOH . F 4 HOH E 30 377 377 HOH HOH . F 4 HOH E 31 379 379 HOH HOH . F 4 HOH E 32 380 380 HOH HOH . F 4 HOH E 33 381 381 HOH HOH . F 4 HOH E 34 382 382 HOH HOH . F 4 HOH E 35 383 383 HOH HOH . F 4 HOH E 36 384 384 HOH HOH . F 4 HOH E 37 385 385 HOH HOH . F 4 HOH E 38 386 386 HOH HOH . F 4 HOH E 39 387 387 HOH HOH . F 4 HOH E 40 388 388 HOH HOH . F 4 HOH E 41 389 389 HOH HOH . F 4 HOH E 42 390 390 HOH HOH . F 4 HOH E 43 391 391 HOH HOH . F 4 HOH E 44 393 393 HOH HOH . F 4 HOH E 45 394 394 HOH HOH . F 4 HOH E 46 396 396 HOH HOH . F 4 HOH E 47 397 397 HOH HOH . F 4 HOH E 48 398 398 HOH HOH . F 4 HOH E 49 399 399 HOH HOH . F 4 HOH E 50 400 400 HOH HOH . F 4 HOH E 51 401 401 HOH HOH . F 4 HOH E 52 403 403 HOH HOH . F 4 HOH E 53 404 404 HOH HOH . F 4 HOH E 54 405 405 HOH HOH . F 4 HOH E 55 406 406 HOH HOH . F 4 HOH E 56 407 407 HOH HOH . F 4 HOH E 57 408 408 HOH HOH . F 4 HOH E 58 409 409 HOH HOH . F 4 HOH E 59 410 410 HOH HOH . F 4 HOH E 60 411 411 HOH HOH . F 4 HOH E 61 412 412 HOH HOH . F 4 HOH E 62 413 413 HOH HOH . F 4 HOH E 63 414 414 HOH HOH . F 4 HOH E 64 415 415 HOH HOH . F 4 HOH E 65 416 416 HOH HOH . F 4 HOH E 66 417 417 HOH HOH . F 4 HOH E 67 418 418 HOH HOH . F 4 HOH E 68 419 419 HOH HOH . F 4 HOH E 69 420 420 HOH HOH . F 4 HOH E 70 421 421 HOH HOH . F 4 HOH E 71 422 422 HOH HOH . F 4 HOH E 72 423 423 HOH HOH . F 4 HOH E 73 424 424 HOH HOH . F 4 HOH E 74 425 425 HOH HOH . F 4 HOH E 75 426 426 HOH HOH . F 4 HOH E 76 427 427 HOH HOH . F 4 HOH E 77 428 428 HOH HOH . F 4 HOH E 78 430 430 HOH HOH . F 4 HOH E 79 431 431 HOH HOH . F 4 HOH E 80 432 432 HOH HOH . F 4 HOH E 81 433 433 HOH HOH . F 4 HOH E 82 434 434 HOH HOH . F 4 HOH E 83 435 435 HOH HOH . F 4 HOH E 84 437 437 HOH HOH . F 4 HOH E 85 438 438 HOH HOH . F 4 HOH E 86 440 440 HOH HOH . F 4 HOH E 87 441 441 HOH HOH . F 4 HOH E 88 442 442 HOH HOH . F 4 HOH E 89 443 443 HOH HOH . F 4 HOH E 90 444 444 HOH HOH . F 4 HOH E 91 445 445 HOH HOH . F 4 HOH E 92 446 446 HOH HOH . F 4 HOH E 93 447 447 HOH HOH . F 4 HOH E 94 448 448 HOH HOH . F 4 HOH E 95 449 449 HOH HOH . F 4 HOH E 96 450 450 HOH HOH . F 4 HOH E 97 451 451 HOH HOH . F 4 HOH E 98 452 452 HOH HOH . F 4 HOH E 99 454 454 HOH HOH . F 4 HOH E 100 455 455 HOH HOH . F 4 HOH E 101 457 457 HOH HOH . F 4 HOH E 102 458 458 HOH HOH . F 4 HOH E 103 459 459 HOH HOH . F 4 HOH E 104 460 460 HOH HOH . F 4 HOH E 105 461 461 HOH HOH . F 4 HOH E 106 462 462 HOH HOH . F 4 HOH E 107 463 463 HOH HOH . F 4 HOH E 108 464 464 HOH HOH . F 4 HOH E 109 465 465 HOH HOH . F 4 HOH E 110 466 466 HOH HOH . F 4 HOH E 111 467 467 HOH HOH . F 4 HOH E 112 468 468 HOH HOH . F 4 HOH E 113 469 469 HOH HOH . F 4 HOH E 114 470 470 HOH HOH . F 4 HOH E 115 471 471 HOH HOH . F 4 HOH E 116 472 472 HOH HOH . F 4 HOH E 117 473 473 HOH HOH . F 4 HOH E 118 474 474 HOH HOH . F 4 HOH E 119 475 475 HOH HOH . F 4 HOH E 120 476 476 HOH HOH . F 4 HOH E 121 477 477 HOH HOH . F 4 HOH E 122 478 478 HOH HOH . F 4 HOH E 123 479 479 HOH HOH . F 4 HOH E 124 480 480 HOH HOH . F 4 HOH E 125 481 481 HOH HOH . F 4 HOH E 126 482 482 HOH HOH . F 4 HOH E 127 483 483 HOH HOH . F 4 HOH E 128 484 484 HOH HOH . F 4 HOH E 129 485 485 HOH HOH . F 4 HOH E 130 486 486 HOH HOH . F 4 HOH E 131 487 487 HOH HOH . F 4 HOH E 132 488 488 HOH HOH . F 4 HOH E 133 489 489 HOH HOH . F 4 HOH E 134 490 490 HOH HOH . F 4 HOH E 135 491 491 HOH HOH . F 4 HOH E 136 492 492 HOH HOH . F 4 HOH E 137 493 493 HOH HOH . F 4 HOH E 138 494 494 HOH HOH . F 4 HOH E 139 495 495 HOH HOH . F 4 HOH E 140 496 496 HOH HOH . F 4 HOH E 141 497 497 HOH HOH . F 4 HOH E 142 498 498 HOH HOH . F 4 HOH E 143 500 500 HOH HOH . F 4 HOH E 144 501 501 HOH HOH . F 4 HOH E 145 502 502 HOH HOH . F 4 HOH E 146 505 505 HOH HOH . F 4 HOH E 147 600 600 HOH HOH . F 4 HOH E 148 601 601 HOH HOH . F 4 HOH E 149 602 602 HOH HOH . G 4 HOH I 1 345 345 HOH HOH . G 4 HOH I 2 352 352 HOH HOH . G 4 HOH I 3 364 364 HOH HOH . G 4 HOH I 4 366 366 HOH HOH . G 4 HOH I 5 370 370 HOH HOH . G 4 HOH I 6 372 372 HOH HOH . G 4 HOH I 7 378 378 HOH HOH . G 4 HOH I 8 392 392 HOH HOH . G 4 HOH I 9 395 395 HOH HOH . G 4 HOH I 10 402 402 HOH HOH . G 4 HOH I 11 429 429 HOH HOH . G 4 HOH I 12 436 436 HOH HOH . G 4 HOH I 13 439 439 HOH HOH . G 4 HOH I 14 453 453 HOH HOH . G 4 HOH I 15 456 456 HOH HOH . G 4 HOH I 16 499 499 HOH HOH . G 4 HOH I 17 503 503 HOH HOH . G 4 HOH I 18 504 504 HOH HOH . G 4 HOH I 19 603 603 HOH HOH . G 4 HOH I 20 604 604 HOH HOH . G 4 HOH I 21 605 605 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.468 _atom_site.Cartn_y 5.457 _atom_site.Cartn_z 9.965 _atom_site.occupancy 0.91 _atom_site.B_iso_or_equiv 9.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 277 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #