data_2SFP
#
_model_server_result.job_id            BYEp4E82GkIaq3-KIgv9oA 
_model_server_result.datetime_utc      '2024-10-18 14:28:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2sfp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":500}' 
#
_entry.id    2SFP 
#
_exptl.entry_id    2SFP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2SFP 
_cell.length_a            98.7 
_cell.length_b            90 
_cell.length_c            85.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2SFP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 39 A LYS 39 1_555 C C4A PLP . A PLP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
covale ? covale2 A C LEU 128 A LEU 128 1_555 A N KCX 129 A KCX 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A C KCX 129 A KCX 129 1_555 A N MET 130 A MET 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale4 B NZ LYS 39 B LYS 39 1_555 F C4A PLP . B PLP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
covale ? covale5 B C LEU 128 B LEU 128 1_555 B N KCX 129 B KCX 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 B C KCX 129 B KCX 129 1_555 B N MET 130 B MET 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 286 n y 
N1 C6 PLP sing 287 n y 
C2 C2A PLP sing 288 n n 
C2 C3 PLP sing 289 n y 
C2A H2A1 PLP sing 290 n n 
C2A H2A2 PLP sing 291 n n 
C2A H2A3 PLP sing 292 n n 
C3 O3 PLP sing 293 n n 
C3 C4 PLP doub 294 n y 
O3 HO3 PLP sing 295 n n 
C4 C4A PLP sing 296 n n 
C4 C5 PLP sing 297 n y 
C4A O4A PLP doub 298 n n 
C4A H4A PLP sing 299 n n 
C5 C6 PLP doub 300 n y 
C5 C5A PLP sing 301 n n 
C6 H6 PLP sing 302 n n 
C5A O4P PLP sing 303 n n 
C5A H5A1 PLP sing 304 n n 
C5A H5A2 PLP sing 305 n n 
O4P P PLP sing 306 n n 
P O1P PLP doub 307 n n 
P O2P PLP sing 308 n n 
P O3P PLP sing 309 n n 
O2P HOP2 PLP sing 310 n n 
O3P HOP3 PLP sing 311 n n 
#
_atom_sites.entry_id                     2SFP 
_atom_sites.fract_transf_matrix[1][1]    0.010132 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011737 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 500 500 PLP PLP . 
D 3 PPI A 1 400 400 PPI PPI . 
E 3 PPI B 1 400 400 PPI PPI . 
F 2 PLP B 1 500 500 PLP PLP . 
G 4 HOH A 1 501 1 HOH HOH . 
G 4 HOH A 2 502 6 HOH HOH . 
G 4 HOH A 3 503 8 HOH HOH . 
G 4 HOH A 4 504 10 HOH HOH . 
G 4 HOH A 5 505 22 HOH HOH . 
G 4 HOH A 6 506 33 HOH HOH . 
G 4 HOH A 7 507 41 HOH HOH . 
G 4 HOH A 8 508 46 HOH HOH . 
G 4 HOH A 9 509 51 HOH HOH . 
G 4 HOH A 10 510 53 HOH HOH . 
G 4 HOH A 11 511 54 HOH HOH . 
G 4 HOH A 12 512 70 HOH HOH . 
G 4 HOH A 13 513 71 HOH HOH . 
G 4 HOH A 14 514 72 HOH HOH . 
G 4 HOH A 15 515 73 HOH HOH . 
G 4 HOH A 16 516 74 HOH HOH . 
G 4 HOH A 17 517 75 HOH HOH . 
G 4 HOH A 18 518 76 HOH HOH . 
G 4 HOH A 19 519 77 HOH HOH . 
G 4 HOH A 20 520 78 HOH HOH . 
G 4 HOH A 21 521 79 HOH HOH . 
G 4 HOH A 22 522 80 HOH HOH . 
G 4 HOH A 23 523 81 HOH HOH . 
G 4 HOH A 24 524 82 HOH HOH . 
G 4 HOH A 25 525 83 HOH HOH . 
G 4 HOH A 26 526 84 HOH HOH . 
G 4 HOH A 27 527 85 HOH HOH . 
G 4 HOH A 28 528 86 HOH HOH . 
G 4 HOH A 29 529 88 HOH HOH . 
G 4 HOH A 30 530 89 HOH HOH . 
G 4 HOH A 31 531 90 HOH HOH . 
G 4 HOH A 32 532 91 HOH HOH . 
G 4 HOH A 33 533 92 HOH HOH . 
G 4 HOH A 34 534 93 HOH HOH . 
G 4 HOH A 35 535 94 HOH HOH . 
G 4 HOH A 36 536 95 HOH HOH . 
G 4 HOH A 37 537 97 HOH HOH . 
G 4 HOH A 38 538 99 HOH HOH . 
G 4 HOH A 39 539 100 HOH HOH . 
G 4 HOH A 40 540 101 HOH HOH . 
G 4 HOH A 41 541 102 HOH HOH . 
G 4 HOH A 42 542 103 HOH HOH . 
G 4 HOH A 43 543 104 HOH HOH . 
G 4 HOH A 44 544 105 HOH HOH . 
G 4 HOH A 45 545 107 HOH HOH . 
G 4 HOH A 46 546 109 HOH HOH . 
G 4 HOH A 47 547 111 HOH HOH . 
G 4 HOH A 48 548 113 HOH HOH . 
G 4 HOH A 49 549 114 HOH HOH . 
G 4 HOH A 50 550 115 HOH HOH . 
G 4 HOH A 51 551 116 HOH HOH . 
G 4 HOH A 52 552 117 HOH HOH . 
G 4 HOH A 53 553 118 HOH HOH . 
G 4 HOH A 54 554 119 HOH HOH . 
G 4 HOH A 55 555 120 HOH HOH . 
G 4 HOH A 56 556 121 HOH HOH . 
G 4 HOH A 57 557 122 HOH HOH . 
G 4 HOH A 58 558 125 HOH HOH . 
G 4 HOH A 59 559 129 HOH HOH . 
G 4 HOH A 60 560 130 HOH HOH . 
G 4 HOH A 61 561 134 HOH HOH . 
G 4 HOH A 62 562 136 HOH HOH . 
G 4 HOH A 63 563 137 HOH HOH . 
G 4 HOH A 64 564 143 HOH HOH . 
G 4 HOH A 65 565 144 HOH HOH . 
G 4 HOH A 66 566 146 HOH HOH . 
G 4 HOH A 67 567 147 HOH HOH . 
G 4 HOH A 68 568 148 HOH HOH . 
G 4 HOH A 69 569 149 HOH HOH . 
G 4 HOH A 70 570 150 HOH HOH . 
G 4 HOH A 71 571 151 HOH HOH . 
G 4 HOH A 72 572 153 HOH HOH . 
G 4 HOH A 73 573 159 HOH HOH . 
G 4 HOH A 74 574 160 HOH HOH . 
G 4 HOH A 75 575 161 HOH HOH . 
G 4 HOH A 76 576 162 HOH HOH . 
G 4 HOH A 77 577 166 HOH HOH . 
G 4 HOH A 78 578 169 HOH HOH . 
G 4 HOH A 79 579 170 HOH HOH . 
G 4 HOH A 80 580 172 HOH HOH . 
G 4 HOH A 81 581 173 HOH HOH . 
G 4 HOH A 82 582 176 HOH HOH . 
G 4 HOH A 83 583 177 HOH HOH . 
G 4 HOH A 84 584 178 HOH HOH . 
G 4 HOH A 85 585 183 HOH HOH . 
G 4 HOH A 86 586 184 HOH HOH . 
G 4 HOH A 87 587 187 HOH HOH . 
G 4 HOH A 88 588 189 HOH HOH . 
G 4 HOH A 89 589 190 HOH HOH . 
G 4 HOH A 90 590 192 HOH HOH . 
G 4 HOH A 91 591 193 HOH HOH . 
G 4 HOH A 92 592 194 HOH HOH . 
G 4 HOH A 93 593 195 HOH HOH . 
G 4 HOH A 94 594 196 HOH HOH . 
G 4 HOH A 95 595 197 HOH HOH . 
G 4 HOH A 96 596 198 HOH HOH . 
G 4 HOH A 97 597 199 HOH HOH . 
G 4 HOH A 98 598 200 HOH HOH . 
G 4 HOH A 99 599 201 HOH HOH . 
G 4 HOH A 100 600 203 HOH HOH . 
G 4 HOH A 101 601 204 HOH HOH . 
G 4 HOH A 102 602 206 HOH HOH . 
H 4 HOH B 1 501 2 HOH HOH . 
H 4 HOH B 2 502 3 HOH HOH . 
H 4 HOH B 3 503 4 HOH HOH . 
H 4 HOH B 4 504 5 HOH HOH . 
H 4 HOH B 5 505 7 HOH HOH . 
H 4 HOH B 6 506 9 HOH HOH . 
H 4 HOH B 7 507 11 HOH HOH . 
H 4 HOH B 8 508 12 HOH HOH . 
H 4 HOH B 9 509 13 HOH HOH . 
H 4 HOH B 10 510 14 HOH HOH . 
H 4 HOH B 11 511 15 HOH HOH . 
H 4 HOH B 12 512 16 HOH HOH . 
H 4 HOH B 13 513 17 HOH HOH . 
H 4 HOH B 14 514 18 HOH HOH . 
H 4 HOH B 15 515 19 HOH HOH . 
H 4 HOH B 16 516 20 HOH HOH . 
H 4 HOH B 17 517 21 HOH HOH . 
H 4 HOH B 18 518 23 HOH HOH . 
H 4 HOH B 19 519 24 HOH HOH . 
H 4 HOH B 20 520 25 HOH HOH . 
H 4 HOH B 21 521 26 HOH HOH . 
H 4 HOH B 22 522 27 HOH HOH . 
H 4 HOH B 23 523 28 HOH HOH . 
H 4 HOH B 24 524 29 HOH HOH . 
H 4 HOH B 25 525 30 HOH HOH . 
H 4 HOH B 26 526 31 HOH HOH . 
H 4 HOH B 27 527 32 HOH HOH . 
H 4 HOH B 28 528 34 HOH HOH . 
H 4 HOH B 29 529 35 HOH HOH . 
H 4 HOH B 30 530 36 HOH HOH . 
H 4 HOH B 31 531 37 HOH HOH . 
H 4 HOH B 32 532 38 HOH HOH . 
H 4 HOH B 33 533 39 HOH HOH . 
H 4 HOH B 34 534 40 HOH HOH . 
H 4 HOH B 35 535 42 HOH HOH . 
H 4 HOH B 36 536 43 HOH HOH . 
H 4 HOH B 37 537 44 HOH HOH . 
H 4 HOH B 38 538 45 HOH HOH . 
H 4 HOH B 39 539 47 HOH HOH . 
H 4 HOH B 40 540 48 HOH HOH . 
H 4 HOH B 41 541 49 HOH HOH . 
H 4 HOH B 42 542 50 HOH HOH . 
H 4 HOH B 43 543 52 HOH HOH . 
H 4 HOH B 44 544 55 HOH HOH . 
H 4 HOH B 45 545 56 HOH HOH . 
H 4 HOH B 46 546 57 HOH HOH . 
H 4 HOH B 47 547 58 HOH HOH . 
H 4 HOH B 48 548 59 HOH HOH . 
H 4 HOH B 49 549 60 HOH HOH . 
H 4 HOH B 50 550 61 HOH HOH . 
H 4 HOH B 51 551 62 HOH HOH . 
H 4 HOH B 52 552 63 HOH HOH . 
H 4 HOH B 53 553 64 HOH HOH . 
H 4 HOH B 54 554 65 HOH HOH . 
H 4 HOH B 55 555 66 HOH HOH . 
H 4 HOH B 56 556 67 HOH HOH . 
H 4 HOH B 57 557 68 HOH HOH . 
H 4 HOH B 58 558 69 HOH HOH . 
H 4 HOH B 59 559 87 HOH HOH . 
H 4 HOH B 60 560 96 HOH HOH . 
H 4 HOH B 61 561 98 HOH HOH . 
H 4 HOH B 62 562 106 HOH HOH . 
H 4 HOH B 63 563 108 HOH HOH . 
H 4 HOH B 64 564 110 HOH HOH . 
H 4 HOH B 65 565 112 HOH HOH . 
H 4 HOH B 66 566 123 HOH HOH . 
H 4 HOH B 67 567 124 HOH HOH . 
H 4 HOH B 68 568 126 HOH HOH . 
H 4 HOH B 69 569 127 HOH HOH . 
H 4 HOH B 70 570 128 HOH HOH . 
H 4 HOH B 71 571 131 HOH HOH . 
H 4 HOH B 72 572 132 HOH HOH . 
H 4 HOH B 73 573 133 HOH HOH . 
H 4 HOH B 74 574 135 HOH HOH . 
H 4 HOH B 75 575 138 HOH HOH . 
H 4 HOH B 76 576 139 HOH HOH . 
H 4 HOH B 77 577 140 HOH HOH . 
H 4 HOH B 78 578 141 HOH HOH . 
H 4 HOH B 79 579 142 HOH HOH . 
H 4 HOH B 80 580 145 HOH HOH . 
H 4 HOH B 81 581 152 HOH HOH . 
H 4 HOH B 82 582 154 HOH HOH . 
H 4 HOH B 83 583 155 HOH HOH . 
H 4 HOH B 84 584 156 HOH HOH . 
H 4 HOH B 85 585 157 HOH HOH . 
H 4 HOH B 86 586 158 HOH HOH . 
H 4 HOH B 87 587 163 HOH HOH . 
H 4 HOH B 88 588 164 HOH HOH . 
H 4 HOH B 89 589 165 HOH HOH . 
H 4 HOH B 90 590 167 HOH HOH . 
H 4 HOH B 91 591 168 HOH HOH . 
H 4 HOH B 92 592 171 HOH HOH . 
H 4 HOH B 93 593 174 HOH HOH . 
H 4 HOH B 94 594 175 HOH HOH . 
H 4 HOH B 95 595 179 HOH HOH . 
H 4 HOH B 96 596 180 HOH HOH . 
H 4 HOH B 97 597 181 HOH HOH . 
H 4 HOH B 98 598 182 HOH HOH . 
H 4 HOH B 99 599 185 HOH HOH . 
H 4 HOH B 100 600 186 HOH HOH . 
H 4 HOH B 101 601 188 HOH HOH . 
H 4 HOH B 102 602 191 HOH HOH . 
H 4 HOH B 103 603 202 HOH HOH . 
H 4 HOH B 104 604 205 HOH HOH . 
H 4 HOH B 105 605 207 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . F 2 23.403 10.695 68.55 1 10.79 ? N1 PLP 500 B 1 
HETATM 2 C C2 PLP . . . F 2 24.448 11.371 69.075 1 7.48 ? C2 PLP 500 B 1 
HETATM 3 C C2A PLP . . . F 2 25.779 10.586 69.303 1 8.86 ? C2A PLP 500 B 1 
HETATM 4 C C3 PLP . . . F 2 24.328 12.694 69.471 1 7.92 ? C3 PLP 500 B 1 
HETATM 5 O O3 PLP . . . F 2 25.501 13.37 69.893 1 9.63 ? O3 PLP 500 B 1 
HETATM 6 C C4 PLP . . . F 2 23.132 13.356 69.359 1 7.74 ? C4 PLP 500 B 1 
HETATM 7 C C4A PLP . . . F 2 23.172 14.775 69.781 1 13.07 ? C4A PLP 500 B 1 
HETATM 8 C C5 PLP . . . F 2 22.073 12.699 68.747 1 9 ? C5 PLP 500 B 1 
HETATM 9 C C6 PLP . . . F 2 22.217 11.392 68.361 1 7.74 ? C6 PLP 500 B 1 
HETATM 10 C C5A PLP . . . F 2 20.85 13.35 68.401 1 9.29 ? C5A PLP 500 B 1 
HETATM 11 O O4P PLP . . . F 2 20.925 13.857 67.04 1 13.39 ? O4P PLP 500 B 1 
HETATM 12 P P PLP . . . F 2 19.72 14.675 66.334 1 13.78 ? P PLP 500 B 1 
HETATM 13 O O1P PLP . . . F 2 19.336 15.784 67.223 1 11.86 ? O1P PLP 500 B 1 
HETATM 14 O O2P PLP . . . F 2 20.389 15.142 65.126 1 20.06 ? O2P PLP 500 B 1 
HETATM 15 O O3P PLP . . . F 2 18.688 13.644 66.171 1 13.16 ? O3P PLP 500 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#