data_2SGD # _model_server_result.job_id wUWYsO2tX3m0VR8dPXfIwg _model_server_result.datetime_utc '2024-12-23 02:57:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2sgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2SGD # _exptl.entry_id 2SGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.24 _cell.angle_gamma 90 _cell.entry_id 2SGD _cell.length_a 45.59 _cell.length_b 54.61 _cell.length_c 45.62 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2SGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 E CYS 42 1_555 A SG CYS 34 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 135 E CYS 191 1_555 A SG CYS 162 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 B SG CYS 3 I CYS 8 1_555 B SG CYS 33 I CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 11 I CYS 16 1_555 B SG CYS 30 I CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? disulf ? disulf5 B SG CYS 19 I CYS 24 1_555 B SG CYS 51 I CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc1 A O ALA 136 E ALA 192 1_555 D K K . E K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc2 A O GLY 160 E GLY 218 1_555 D K K . E K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc3 D K K . E K 501 1_555 E O HOH . E HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.402 ? metalc ? metalc4 D K K . E K 501 1_555 E O HOH . E HOH 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc5 D K K . E K 501 1_555 B OD1 ASP 13 I ASP 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.145 ? metalc ? metalc6 D K K . E K 501 1_555 B OD2 ASP 13 I ASP 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.713 ? metalc ? metalc7 D K K . E K 501 1_555 F O HOH . I HOH 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? metalc ? metalc8 D K K . E K 501 1_555 F O HOH . I HOH 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? metalc ? metalc9 D K K . E K 501 1_555 F O HOH . I HOH 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 2SGD _atom_sites.fract_transf_matrix[1][1] 0.021935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012279 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 E 1 500 500 PO4 PO4 . D 4 K E 1 501 501 K K . E 5 HOH E 1 502 1 HOH HOH . E 5 HOH E 2 503 2 HOH HOH . E 5 HOH E 3 504 3 HOH HOH . E 5 HOH E 4 505 4 HOH HOH . E 5 HOH E 5 506 5 HOH HOH . E 5 HOH E 6 507 7 HOH HOH . E 5 HOH E 7 508 8 HOH HOH . E 5 HOH E 8 509 9 HOH HOH . E 5 HOH E 9 510 10 HOH HOH . E 5 HOH E 10 511 11 HOH HOH . E 5 HOH E 11 512 12 HOH HOH . E 5 HOH E 12 513 13 HOH HOH . E 5 HOH E 13 514 14 HOH HOH . E 5 HOH E 14 515 16 HOH HOH . E 5 HOH E 15 516 18 HOH HOH . E 5 HOH E 16 517 20 HOH HOH . E 5 HOH E 17 518 21 HOH HOH . E 5 HOH E 18 519 22 HOH HOH . E 5 HOH E 19 520 23 HOH HOH . E 5 HOH E 20 521 24 HOH HOH . E 5 HOH E 21 522 25 HOH HOH . E 5 HOH E 22 523 28 HOH HOH . E 5 HOH E 23 524 29 HOH HOH . E 5 HOH E 24 525 31 HOH HOH . E 5 HOH E 25 526 34 HOH HOH . E 5 HOH E 26 527 36 HOH HOH . E 5 HOH E 27 528 38 HOH HOH . E 5 HOH E 28 529 39 HOH HOH . E 5 HOH E 29 530 41 HOH HOH . E 5 HOH E 30 531 42 HOH HOH . E 5 HOH E 31 532 43 HOH HOH . E 5 HOH E 32 533 44 HOH HOH . E 5 HOH E 33 534 46 HOH HOH . E 5 HOH E 34 535 47 HOH HOH . E 5 HOH E 35 536 49 HOH HOH . E 5 HOH E 36 537 51 HOH HOH . E 5 HOH E 37 538 52 HOH HOH . E 5 HOH E 38 539 53 HOH HOH . E 5 HOH E 39 540 55 HOH HOH . E 5 HOH E 40 541 57 HOH HOH . E 5 HOH E 41 542 58 HOH HOH . E 5 HOH E 42 543 60 HOH HOH . E 5 HOH E 43 544 61 HOH HOH . E 5 HOH E 44 545 64 HOH HOH . E 5 HOH E 45 546 65 HOH HOH . E 5 HOH E 46 547 66 HOH HOH . E 5 HOH E 47 548 68 HOH HOH . E 5 HOH E 48 549 69 HOH HOH . E 5 HOH E 49 550 70 HOH HOH . E 5 HOH E 50 551 72 HOH HOH . E 5 HOH E 51 552 73 HOH HOH . E 5 HOH E 52 553 74 HOH HOH . E 5 HOH E 53 554 75 HOH HOH . E 5 HOH E 54 555 77 HOH HOH . E 5 HOH E 55 556 78 HOH HOH . E 5 HOH E 56 557 80 HOH HOH . E 5 HOH E 57 558 81 HOH HOH . E 5 HOH E 58 559 82 HOH HOH . E 5 HOH E 59 560 83 HOH HOH . E 5 HOH E 60 561 84 HOH HOH . E 5 HOH E 61 562 86 HOH HOH . E 5 HOH E 62 563 90 HOH HOH . E 5 HOH E 63 564 92 HOH HOH . E 5 HOH E 64 565 93 HOH HOH . E 5 HOH E 65 566 94 HOH HOH . E 5 HOH E 66 567 96 HOH HOH . E 5 HOH E 67 568 99 HOH HOH . E 5 HOH E 68 569 102 HOH HOH . E 5 HOH E 69 570 106 HOH HOH . E 5 HOH E 70 571 108 HOH HOH . E 5 HOH E 71 572 111 HOH HOH . E 5 HOH E 72 573 113 HOH HOH . E 5 HOH E 73 574 115 HOH HOH . E 5 HOH E 74 575 116 HOH HOH . E 5 HOH E 75 576 121 HOH HOH . E 5 HOH E 76 577 122 HOH HOH . E 5 HOH E 77 578 123 HOH HOH . E 5 HOH E 78 579 128 HOH HOH . E 5 HOH E 79 580 129 HOH HOH . E 5 HOH E 80 581 132 HOH HOH . E 5 HOH E 81 582 133 HOH HOH . E 5 HOH E 82 583 136 HOH HOH . E 5 HOH E 83 584 139 HOH HOH . E 5 HOH E 84 585 144 HOH HOH . E 5 HOH E 85 586 145 HOH HOH . E 5 HOH E 86 587 147 HOH HOH . E 5 HOH E 87 588 149 HOH HOH . E 5 HOH E 88 589 150 HOH HOH . E 5 HOH E 89 590 158 HOH HOH . E 5 HOH E 90 591 160 HOH HOH . E 5 HOH E 91 592 165 HOH HOH . E 5 HOH E 92 593 167 HOH HOH . E 5 HOH E 93 594 168 HOH HOH . E 5 HOH E 94 595 171 HOH HOH . E 5 HOH E 95 596 204 HOH HOH . E 5 HOH E 96 597 218 HOH HOH . E 5 HOH E 97 598 225 HOH HOH . E 5 HOH E 98 599 231 HOH HOH . E 5 HOH E 99 600 238 HOH HOH . E 5 HOH E 100 601 239 HOH HOH . E 5 HOH E 101 602 242 HOH HOH . E 5 HOH E 102 603 248 HOH HOH . E 5 HOH E 103 604 249 HOH HOH . E 5 HOH E 104 605 251 HOH HOH . E 5 HOH E 105 606 252 HOH HOH . E 5 HOH E 106 607 253 HOH HOH . E 5 HOH E 107 608 255 HOH HOH . E 5 HOH E 108 609 260 HOH HOH . E 5 HOH E 109 610 261 HOH HOH . E 5 HOH E 110 611 262 HOH HOH . E 5 HOH E 111 612 263 HOH HOH . E 5 HOH E 112 613 264 HOH HOH . E 5 HOH E 113 614 266 HOH HOH . E 5 HOH E 114 615 267 HOH HOH . E 5 HOH E 115 616 269 HOH HOH . E 5 HOH E 116 617 270 HOH HOH . F 5 HOH I 1 57 6 HOH HOH . F 5 HOH I 2 58 17 HOH HOH . F 5 HOH I 3 59 19 HOH HOH . F 5 HOH I 4 60 26 HOH HOH . F 5 HOH I 5 61 27 HOH HOH . F 5 HOH I 6 62 30 HOH HOH . F 5 HOH I 7 63 33 HOH HOH . F 5 HOH I 8 64 35 HOH HOH . F 5 HOH I 9 65 37 HOH HOH . F 5 HOH I 10 66 40 HOH HOH . F 5 HOH I 11 67 45 HOH HOH . F 5 HOH I 12 68 48 HOH HOH . F 5 HOH I 13 69 54 HOH HOH . F 5 HOH I 14 70 59 HOH HOH . F 5 HOH I 15 71 67 HOH HOH . F 5 HOH I 16 72 87 HOH HOH . F 5 HOH I 17 73 88 HOH HOH . F 5 HOH I 18 74 89 HOH HOH . F 5 HOH I 19 75 91 HOH HOH . F 5 HOH I 20 76 100 HOH HOH . F 5 HOH I 21 77 101 HOH HOH . F 5 HOH I 22 78 109 HOH HOH . F 5 HOH I 23 79 112 HOH HOH . F 5 HOH I 24 80 114 HOH HOH . F 5 HOH I 25 81 117 HOH HOH . F 5 HOH I 26 82 130 HOH HOH . F 5 HOH I 27 83 148 HOH HOH . F 5 HOH I 28 84 177 HOH HOH . F 5 HOH I 29 85 201 HOH HOH . F 5 HOH I 30 86 202 HOH HOH . F 5 HOH I 31 87 212 HOH HOH . F 5 HOH I 32 88 221 HOH HOH . F 5 HOH I 33 89 265 HOH HOH . F 5 HOH I 34 90 268 HOH HOH . F 5 HOH I 35 91 275 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 1.627 12.854 27.734 0.5 56.46 ? P PO4 500 E 1 HETATM 2 O O1 PO4 . . . C 3 2.356 14.047 27.259 0.5 53.6 ? O1 PO4 500 E 1 HETATM 3 O O2 PO4 . . . C 3 1.009 13.102 29.068 0.5 56.92 ? O2 PO4 500 E 1 HETATM 4 O O3 PO4 . . . C 3 0.544 12.539 26.771 0.5 55.85 ? O3 PO4 500 E 1 HETATM 5 O O4 PO4 . . . C 3 2.552 11.692 27.833 0.5 57.12 ? O4 PO4 500 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #