data_2SPM
#
_model_server_result.job_id            gRb0kwVN7tjU7RMA8bF5Og 
_model_server_result.datetime_utc      '2024-11-23 21:45:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2spm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":154}' 
#
_entry.id    2SPM 
#
_exptl.entry_id    2SPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2SPM 
_cell.length_a            91.2 
_cell.length_b            91.2 
_cell.length_c            45.87 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2SPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 C FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc2 C FE HEM . A HEM 154 1_555 D O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     2SPM 
_atom_sites.fract_transf_matrix[1][1]    0.010965 
_atom_sites.fract_transf_matrix[1][2]    0.00633 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012661 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021801 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 156 156 SO4 SO4 . 
C 3 HEM A 1 154 154 HEM HEM . 
D 4 HOH A 1 155 155 HOH MTO . 
D 4 HOH A 2 200 200 HOH HOH . 
D 4 HOH A 3 201 201 HOH HOH . 
D 4 HOH A 4 202 202 HOH HOH . 
D 4 HOH A 5 203 203 HOH HOH . 
D 4 HOH A 6 204 204 HOH HOH . 
D 4 HOH A 7 205 205 HOH HOH . 
D 4 HOH A 8 206 206 HOH HOH . 
D 4 HOH A 9 207 207 HOH HOH . 
D 4 HOH A 10 208 208 HOH HOH . 
D 4 HOH A 11 209 209 HOH HOH . 
D 4 HOH A 12 210 210 HOH HOH . 
D 4 HOH A 13 211 211 HOH HOH . 
D 4 HOH A 14 212 212 HOH HOH . 
D 4 HOH A 15 213 213 HOH HOH . 
D 4 HOH A 16 214 214 HOH HOH . 
D 4 HOH A 17 215 215 HOH HOH . 
D 4 HOH A 18 216 216 HOH HOH . 
D 4 HOH A 19 217 217 HOH HOH . 
D 4 HOH A 20 218 218 HOH HOH . 
D 4 HOH A 21 219 219 HOH HOH . 
D 4 HOH A 22 220 220 HOH HOH . 
D 4 HOH A 23 221 221 HOH HOH . 
D 4 HOH A 24 222 222 HOH HOH . 
D 4 HOH A 25 223 223 HOH HOH . 
D 4 HOH A 26 224 224 HOH HOH . 
D 4 HOH A 27 225 225 HOH HOH . 
D 4 HOH A 28 226 226 HOH HOH . 
D 4 HOH A 29 227 227 HOH HOH . 
D 4 HOH A 30 228 228 HOH HOH . 
D 4 HOH A 31 229 229 HOH HOH . 
D 4 HOH A 32 230 230 HOH HOH . 
D 4 HOH A 33 231 231 HOH HOH . 
D 4 HOH A 34 232 232 HOH HOH . 
D 4 HOH A 35 233 233 HOH HOH . 
D 4 HOH A 36 234 234 HOH HOH . 
D 4 HOH A 37 235 235 HOH HOH . 
D 4 HOH A 38 236 236 HOH HOH . 
D 4 HOH A 39 237 237 HOH HOH . 
D 4 HOH A 40 238 238 HOH HOH . 
D 4 HOH A 41 239 239 HOH HOH . 
D 4 HOH A 42 240 240 HOH HOH . 
D 4 HOH A 43 241 241 HOH HOH . 
D 4 HOH A 44 242 242 HOH HOH . 
D 4 HOH A 45 243 243 HOH HOH . 
D 4 HOH A 46 244 244 HOH HOH . 
D 4 HOH A 47 245 245 HOH HOH . 
D 4 HOH A 48 246 246 HOH HOH . 
D 4 HOH A 49 247 247 HOH HOH . 
D 4 HOH A 50 248 248 HOH HOH . 
D 4 HOH A 51 249 249 HOH HOH . 
D 4 HOH A 52 250 250 HOH HOH . 
D 4 HOH A 53 251 251 HOH HOH . 
D 4 HOH A 54 252 252 HOH HOH . 
D 4 HOH A 55 253 253 HOH HOH . 
D 4 HOH A 56 254 254 HOH HOH . 
D 4 HOH A 57 255 255 HOH HOH . 
D 4 HOH A 58 256 256 HOH HOH . 
D 4 HOH A 59 257 257 HOH HOH . 
D 4 HOH A 60 258 258 HOH HOH . 
D 4 HOH A 61 259 259 HOH HOH . 
D 4 HOH A 62 260 260 HOH HOH . 
D 4 HOH A 63 261 261 HOH HOH . 
D 4 HOH A 64 262 262 HOH HOH . 
D 4 HOH A 65 263 263 HOH HOH . 
D 4 HOH A 66 264 264 HOH HOH . 
D 4 HOH A 67 265 265 HOH HOH . 
D 4 HOH A 68 266 266 HOH HOH . 
D 4 HOH A 69 267 267 HOH HOH . 
D 4 HOH A 70 268 268 HOH HOH . 
D 4 HOH A 71 269 269 HOH HOH . 
D 4 HOH A 72 270 270 HOH HOH . 
D 4 HOH A 73 271 271 HOH HOH . 
D 4 HOH A 74 272 272 HOH HOH . 
D 4 HOH A 75 273 273 HOH HOH . 
D 4 HOH A 76 274 274 HOH HOH . 
D 4 HOH A 77 275 275 HOH HOH . 
D 4 HOH A 78 276 276 HOH HOH . 
D 4 HOH A 79 277 277 HOH HOH . 
D 4 HOH A 80 278 278 HOH HOH . 
D 4 HOH A 81 279 279 HOH HOH . 
D 4 HOH A 82 280 280 HOH HOH . 
D 4 HOH A 83 281 281 HOH HOH . 
D 4 HOH A 84 282 282 HOH HOH . 
D 4 HOH A 85 283 283 HOH HOH . 
D 4 HOH A 86 284 284 HOH HOH . 
D 4 HOH A 87 285 285 HOH HOH . 
D 4 HOH A 88 286 286 HOH HOH . 
D 4 HOH A 89 287 287 HOH HOH . 
D 4 HOH A 90 288 288 HOH HOH . 
D 4 HOH A 91 289 289 HOH HOH . 
D 4 HOH A 92 290 290 HOH HOH . 
D 4 HOH A 93 291 291 HOH HOH . 
D 4 HOH A 94 292 292 HOH HOH . 
D 4 HOH A 95 293 293 HOH HOH . 
D 4 HOH A 96 294 294 HOH HOH . 
D 4 HOH A 97 295 295 HOH HOH . 
D 4 HOH A 98 296 296 HOH HOH . 
D 4 HOH A 99 297 297 HOH HOH . 
D 4 HOH A 100 298 298 HOH HOH . 
D 4 HOH A 101 299 299 HOH HOH . 
D 4 HOH A 102 300 300 HOH HOH . 
D 4 HOH A 103 301 301 HOH HOH . 
D 4 HOH A 104 302 302 HOH HOH . 
D 4 HOH A 105 303 303 HOH HOH . 
D 4 HOH A 106 304 304 HOH HOH . 
D 4 HOH A 107 305 305 HOH HOH . 
D 4 HOH A 108 306 306 HOH HOH . 
D 4 HOH A 109 307 307 HOH HOH . 
D 4 HOH A 110 308 308 HOH HOH . 
D 4 HOH A 111 309 309 HOH HOH . 
D 4 HOH A 112 310 310 HOH HOH . 
D 4 HOH A 113 311 311 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 37.857 2.243 11.399 1 11.4 ? CHA HEM 154 A 1 
HETATM 2 C CHB HEM . . . C 3 37.096 5.3 7.679 1 10.9 ? CHB HEM 154 A 1 
HETATM 3 C CHC HEM . . . C 3 32.7 6.184 9.312 1 12.8 ? CHC HEM 154 A 1 
HETATM 4 C CHD HEM . . . C 3 33.252 3.096 12.958 1 12.7 ? CHD HEM 154 A 1 
HETATM 5 C C1A HEM . . . C 3 38.008 3.057 10.279 1 11.4 ? C1A HEM 154 A 1 
HETATM 6 C C2A HEM . . . C 3 39.266 3.104 9.5 1 12.8 ? C2A HEM 154 A 1 
HETATM 7 C C3A HEM . . . C 3 39.066 3.941 8.477 1 12.1 ? C3A HEM 154 A 1 
HETATM 8 C C4A HEM . . . C 3 37.716 4.462 8.587 1 10.7 ? C4A HEM 154 A 1 
HETATM 9 C CMA HEM . . . C 3 40.028 4.281 7.303 1 13.1 ? CMA HEM 154 A 1 
HETATM 10 C CAA HEM . . . C 3 40.52 2.227 9.779 1 13.8 ? CAA HEM 154 A 1 
HETATM 11 C CBA HEM . . . C 3 40.543 0.971 8.857 1 16.3 ? CBA HEM 154 A 1 
HETATM 12 C CGA HEM . . . C 3 39.312 0.118 8.857 1 14.2 ? CGA HEM 154 A 1 
HETATM 13 O O1A HEM . . . C 3 38.956 -0.498 9.913 1 19.7 ? O1A HEM 154 A 1 
HETATM 14 O O2A HEM . . . C 3 38.573 0.103 7.807 1 19.6 ? O2A HEM 154 A 1 
HETATM 15 C C1B HEM . . . C 3 35.869 5.829 7.802 1 11.5 ? C1B HEM 154 A 1 
HETATM 16 C C2B HEM . . . C 3 35.258 6.792 6.867 1 11.9 ? C2B HEM 154 A 1 
HETATM 17 C C3B HEM . . . C 3 34.004 7.006 7.298 1 12 ? C3B HEM 154 A 1 
HETATM 18 C C4B HEM . . . C 3 33.812 6.247 8.5 1 12.1 ? C4B HEM 154 A 1 
HETATM 19 C CMB HEM . . . C 3 35.928 7.322 5.555 1 12.2 ? CMB HEM 154 A 1 
HETATM 20 C CAB HEM . . . C 3 32.9 7.922 6.702 1 13.2 ? CAB HEM 154 A 1 
HETATM 21 C CBB HEM . . . C 3 33.142 9.114 6.165 1 18 ? CBB HEM 154 A 1 
HETATM 22 C C1C HEM . . . C 3 32.444 5.458 10.477 1 13.2 ? C1C HEM 154 A 1 
HETATM 23 C C2C HEM . . . C 3 31.291 5.592 11.33 1 14.1 ? C2C HEM 154 A 1 
HETATM 24 C C3C HEM . . . C 3 31.459 4.747 12.367 1 14.7 ? C3C HEM 154 A 1 
HETATM 25 C C4C HEM . . . C 3 32.727 4.068 12.123 1 13.3 ? C4C HEM 154 A 1 
HETATM 26 C CMC HEM . . . C 3 30.096 6.571 11.119 1 14.4 ? CMC HEM 154 A 1 
HETATM 27 C CAC HEM . . . C 3 30.675 4.447 13.646 1 13.5 ? CAC HEM 154 A 1 
HETATM 28 C CBC HEM . . . C 3 29.572 5.221 13.931 1 16.6 ? CBC HEM 154 A 1 
HETATM 29 C C1D HEM . . . C 3 34.592 2.701 12.83 1 14 ? C1D HEM 154 A 1 
HETATM 30 C C2D HEM . . . C 3 35.217 1.761 13.784 1 12.6 ? C2D HEM 154 A 1 
HETATM 31 C C3D HEM . . . C 3 36.453 1.548 13.367 1 13 ? C3D HEM 154 A 1 
HETATM 32 C C4D HEM . . . C 3 36.662 2.275 12.133 1 12.5 ? C4D HEM 154 A 1 
HETATM 33 C CMD HEM . . . C 3 34.451 1.193 15.018 1 15.1 ? CMD HEM 154 A 1 
HETATM 34 C CAD HEM . . . C 3 37.542 0.75 14.151 1 15.8 ? CAD HEM 154 A 1 
HETATM 35 C CBD HEM . . . C 3 38.099 1.761 15.288 1 20.3 ? CBD HEM 154 A 1 
HETATM 36 C CGD HEM . . . C 3 39.23 1.082 16.1 1 21.9 ? CGD HEM 154 A 1 
HETATM 37 O O1D HEM . . . C 3 38.815 0.284 17.032 1 29.4 ? O1D HEM 154 A 1 
HETATM 38 O O2D HEM . . . C 3 40.37 1.193 15.692 1 28.3 ? O2D HEM 154 A 1 
HETATM 39 N NA HEM . . . C 3 37.041 3.925 9.702 1 11.2 ? NA HEM 154 A 1 
HETATM 40 N NB HEM . . . C 3 34.907 5.473 8.747 1 12.1 ? NB HEM 154 A 1 
HETATM 41 N NC HEM . . . C 3 33.32 4.494 10.963 1 13.3 ? NC HEM 154 A 1 
HETATM 42 N ND HEM . . . C 3 35.468 2.859 11.793 1 12.9 ? ND HEM 154 A 1 
HETATM 43 FE FE HEM . . . C 3 35.171 4.131 10.22 1 12.9 ? FE HEM 154 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#