data_2TIO # _model_server_result.job_id '_a-JyWvn8kGJVJ4dBL748g' _model_server_result.datetime_utc '2024-12-25 04:22:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2tio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":247}' # _entry.id 2TIO # _exptl.entry_id 2TIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2TIO _cell.length_a 63.02 _cell.length_b 63.78 _cell.length_c 69.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc5 B CA CA . A CA 246 1_555 H O HOH . A HOH 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 B CA CA . A CA 246 1_555 H O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 2TIO _atom_sites.fract_transf_matrix[1][1] 0.015868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 246 246 CA CA . C 3 SO4 A 1 248 248 SO4 SO4 . D 3 SO4 A 1 249 249 SO4 SO4 . E 3 SO4 A 1 250 250 SO4 SO4 . F 4 BEN A 1 247 247 BEN BEN . G 5 HEX A 1 251 251 HEX HEX . H 6 HOH A 1 252 252 HOH HOH . H 6 HOH A 2 253 253 HOH HOH . H 6 HOH A 3 254 254 HOH HOH . H 6 HOH A 4 255 255 HOH HOH . H 6 HOH A 5 256 256 HOH HOH . H 6 HOH A 6 257 257 HOH HOH . H 6 HOH A 7 258 258 HOH HOH . H 6 HOH A 8 259 259 HOH HOH . H 6 HOH A 9 260 260 HOH HOH . H 6 HOH A 10 261 261 HOH HOH . H 6 HOH A 11 262 262 HOH HOH . H 6 HOH A 12 263 263 HOH HOH . H 6 HOH A 13 264 264 HOH HOH . H 6 HOH A 14 265 265 HOH HOH . H 6 HOH A 15 266 266 HOH HOH . H 6 HOH A 16 267 267 HOH HOH . H 6 HOH A 17 268 268 HOH HOH . H 6 HOH A 18 269 269 HOH HOH . H 6 HOH A 19 270 270 HOH HOH . H 6 HOH A 20 271 271 HOH HOH . H 6 HOH A 21 272 272 HOH HOH . H 6 HOH A 22 273 273 HOH HOH . H 6 HOH A 23 274 274 HOH HOH . H 6 HOH A 24 275 275 HOH HOH . H 6 HOH A 25 276 276 HOH HOH . H 6 HOH A 26 277 277 HOH HOH . H 6 HOH A 27 278 278 HOH HOH . H 6 HOH A 28 279 279 HOH HOH . H 6 HOH A 29 280 280 HOH HOH . H 6 HOH A 30 281 281 HOH HOH . H 6 HOH A 31 282 282 HOH HOH . H 6 HOH A 32 283 283 HOH HOH . H 6 HOH A 33 284 284 HOH HOH . H 6 HOH A 34 285 285 HOH HOH . H 6 HOH A 35 286 286 HOH HOH . H 6 HOH A 36 287 287 HOH HOH . H 6 HOH A 37 288 288 HOH HOH . H 6 HOH A 38 289 289 HOH HOH . H 6 HOH A 39 290 290 HOH HOH . H 6 HOH A 40 291 291 HOH HOH . H 6 HOH A 41 292 292 HOH HOH . H 6 HOH A 42 293 293 HOH HOH . H 6 HOH A 43 294 294 HOH HOH . H 6 HOH A 44 295 295 HOH HOH . H 6 HOH A 45 296 296 HOH HOH . H 6 HOH A 46 297 297 HOH HOH . H 6 HOH A 47 298 298 HOH HOH . H 6 HOH A 48 299 299 HOH HOH . H 6 HOH A 49 300 300 HOH HOH . H 6 HOH A 50 301 301 HOH HOH . H 6 HOH A 51 302 302 HOH HOH . H 6 HOH A 52 303 303 HOH HOH . H 6 HOH A 53 304 304 HOH HOH . H 6 HOH A 54 305 305 HOH HOH . H 6 HOH A 55 306 306 HOH HOH . H 6 HOH A 56 307 307 HOH HOH . H 6 HOH A 57 308 308 HOH HOH . H 6 HOH A 58 309 309 HOH HOH . H 6 HOH A 59 310 310 HOH HOH . H 6 HOH A 60 311 311 HOH HOH . H 6 HOH A 61 312 312 HOH HOH . H 6 HOH A 62 313 313 HOH HOH . H 6 HOH A 63 314 314 HOH HOH . H 6 HOH A 64 315 315 HOH HOH . H 6 HOH A 65 316 316 HOH HOH . H 6 HOH A 66 317 317 HOH HOH . H 6 HOH A 67 318 318 HOH HOH . H 6 HOH A 68 319 319 HOH HOH . H 6 HOH A 69 320 320 HOH HOH . H 6 HOH A 70 321 321 HOH HOH . H 6 HOH A 71 322 322 HOH HOH . H 6 HOH A 72 323 323 HOH HOH . H 6 HOH A 73 324 324 HOH HOH . H 6 HOH A 74 325 325 HOH HOH . H 6 HOH A 75 326 326 HOH HOH . H 6 HOH A 76 327 327 HOH HOH . H 6 HOH A 77 328 328 HOH HOH . H 6 HOH A 78 329 329 HOH HOH . H 6 HOH A 79 330 330 HOH HOH . H 6 HOH A 80 331 331 HOH HOH . H 6 HOH A 81 332 332 HOH HOH . H 6 HOH A 82 333 333 HOH HOH . H 6 HOH A 83 334 334 HOH HOH . H 6 HOH A 84 335 335 HOH HOH . H 6 HOH A 85 336 336 HOH HOH . H 6 HOH A 86 337 337 HOH HOH . H 6 HOH A 87 338 338 HOH HOH . H 6 HOH A 88 339 339 HOH HOH . H 6 HOH A 89 340 340 HOH HOH . H 6 HOH A 90 341 341 HOH HOH . H 6 HOH A 91 342 342 HOH HOH . H 6 HOH A 92 343 343 HOH HOH . H 6 HOH A 93 344 344 HOH HOH . H 6 HOH A 94 345 345 HOH HOH . H 6 HOH A 95 346 346 HOH HOH . H 6 HOH A 96 347 347 HOH HOH . H 6 HOH A 97 348 348 HOH HOH . H 6 HOH A 98 349 349 HOH HOH . H 6 HOH A 99 350 350 HOH HOH . H 6 HOH A 100 351 351 HOH HOH . H 6 HOH A 101 352 352 HOH HOH . H 6 HOH A 102 353 353 HOH HOH . H 6 HOH A 103 354 354 HOH HOH . H 6 HOH A 104 355 355 HOH HOH . H 6 HOH A 105 356 356 HOH HOH . H 6 HOH A 106 357 357 HOH HOH . H 6 HOH A 107 358 358 HOH HOH . H 6 HOH A 108 359 359 HOH HOH . H 6 HOH A 109 360 360 HOH HOH . H 6 HOH A 110 361 361 HOH HOH . H 6 HOH A 111 362 362 HOH HOH . H 6 HOH A 112 363 363 HOH HOH . H 6 HOH A 113 364 364 HOH HOH . H 6 HOH A 114 365 365 HOH HOH . H 6 HOH A 115 366 366 HOH HOH . H 6 HOH A 116 367 367 HOH HOH . H 6 HOH A 117 368 368 HOH HOH . H 6 HOH A 118 369 369 HOH HOH . H 6 HOH A 119 370 370 HOH HOH . H 6 HOH A 120 371 371 HOH HOH . H 6 HOH A 121 372 372 HOH HOH . H 6 HOH A 122 373 373 HOH HOH . H 6 HOH A 123 374 374 HOH HOH . H 6 HOH A 124 375 375 HOH HOH . H 6 HOH A 125 376 376 HOH HOH . H 6 HOH A 126 377 377 HOH HOH . H 6 HOH A 127 378 378 HOH HOH . H 6 HOH A 128 379 379 HOH HOH . H 6 HOH A 129 380 380 HOH HOH . H 6 HOH A 130 381 381 HOH HOH . H 6 HOH A 131 382 382 HOH HOH . H 6 HOH A 132 383 383 HOH HOH . H 6 HOH A 133 384 384 HOH HOH . H 6 HOH A 134 385 385 HOH HOH . H 6 HOH A 135 386 386 HOH HOH . H 6 HOH A 136 387 387 HOH HOH . H 6 HOH A 137 388 388 HOH HOH . H 6 HOH A 138 389 389 HOH HOH . H 6 HOH A 139 390 390 HOH HOH . H 6 HOH A 140 391 391 HOH HOH . H 6 HOH A 141 392 392 HOH HOH . H 6 HOH A 142 393 393 HOH HOH . H 6 HOH A 143 394 394 HOH HOH . H 6 HOH A 144 395 395 HOH HOH . H 6 HOH A 145 396 396 HOH HOH . H 6 HOH A 146 397 397 HOH HOH . H 6 HOH A 147 398 398 HOH HOH . H 6 HOH A 148 399 399 HOH HOH . H 6 HOH A 149 400 400 HOH HOH . H 6 HOH A 150 401 401 HOH HOH . H 6 HOH A 151 402 402 HOH HOH . H 6 HOH A 152 403 403 HOH HOH . H 6 HOH A 153 404 404 HOH HOH . H 6 HOH A 154 405 405 HOH HOH . H 6 HOH A 155 406 406 HOH HOH . H 6 HOH A 156 407 407 HOH HOH . H 6 HOH A 157 408 408 HOH HOH . H 6 HOH A 158 409 409 HOH HOH . H 6 HOH A 159 410 410 HOH HOH . H 6 HOH A 160 411 411 HOH HOH . H 6 HOH A 161 412 412 HOH HOH . H 6 HOH A 162 413 413 HOH HOH . H 6 HOH A 163 414 414 HOH HOH . H 6 HOH A 164 415 415 HOH HOH . H 6 HOH A 165 416 416 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . F 4 12.709 3.715 77.856 1 20.11 ? C1 BEN 247 A 1 HETATM 2 C C2 BEN . . . F 4 14.015 3.265 78.045 1 19.75 ? C2 BEN 247 A 1 HETATM 3 C C3 BEN . . . F 4 14.648 3.402 79.277 1 21.49 ? C3 BEN 247 A 1 HETATM 4 C C4 BEN . . . F 4 13.987 4.037 80.327 1 21.28 ? C4 BEN 247 A 1 HETATM 5 C C5 BEN . . . F 4 12.71 4.553 80.124 1 21.93 ? C5 BEN 247 A 1 HETATM 6 C C6 BEN . . . F 4 12.045 4.306 78.926 1 20.43 ? C6 BEN 247 A 1 HETATM 7 C C BEN . . . F 4 12.083 3.588 76.612 1 20.94 ? C BEN 247 A 1 HETATM 8 N N1 BEN . . . F 4 10.799 3.911 76.472 1 21.74 ? N1 BEN 247 A 1 HETATM 9 N N2 BEN . . . F 4 12.775 3.148 75.563 1 20.83 ? N2 BEN 247 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #