data_2TNF # _model_server_result.job_id uqBdNTAU96U87EfHZTtQGA _model_server_result.datetime_utc '2024-10-13 11:18:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2tnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1196}' # _entry.id 2TNF # _exptl.entry_id 2TNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 114.81 _cell.angle_beta 103.65 _cell.angle_gamma 91.05 _cell.entry_id 2TNF _cell.length_a 48.214 _cell.length_b 48.3 _cell.length_c 51.095 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 100 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 69 B CYS 69 1_555 B SG CYS 100 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 69 C CYS 69 1_555 C SG CYS 100 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 345 n n C C2 TRS sing 346 n n C C3 TRS sing 347 n n C N TRS sing 348 n n C1 O1 TRS sing 349 n n C1 H11 TRS sing 350 n n C1 H12 TRS sing 351 n n C2 O2 TRS sing 352 n n C2 H21 TRS sing 353 n n C2 H22 TRS sing 354 n n C3 O3 TRS sing 355 n n C3 H31 TRS sing 356 n n C3 H32 TRS sing 357 n n N HN1 TRS sing 358 n n N HN2 TRS sing 359 n n N HN3 TRS sing 360 n n O1 HO1 TRS sing 361 n n O2 HO2 TRS sing 362 n n O3 HO3 TRS sing 363 n n # _atom_sites.entry_id 2TNF _atom_sites.fract_transf_matrix[1][1] 0.020741 _atom_sites.fract_transf_matrix[1][2] 0.00038 _atom_sites.fract_transf_matrix[1][3] 0.005782 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020707 _atom_sites.fract_transf_matrix[2][3] 0.010042 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TRS A 1 1196 1196 TRS TRS . E 3 IPA B 1 1195 1195 IPA IPA . F 4 HOH A 1 1197 3 HOH HOH . F 4 HOH A 2 1198 7 HOH HOH . F 4 HOH A 3 1199 8 HOH HOH . F 4 HOH A 4 1200 9 HOH HOH . F 4 HOH A 5 1201 12 HOH HOH . F 4 HOH A 6 1202 14 HOH HOH . F 4 HOH A 7 1203 24 HOH HOH . F 4 HOH A 8 1204 25 HOH HOH . F 4 HOH A 9 1205 27 HOH HOH . F 4 HOH A 10 1206 31 HOH HOH . F 4 HOH A 11 1207 38 HOH HOH . F 4 HOH A 12 1208 43 HOH HOH . F 4 HOH A 13 1209 48 HOH HOH . F 4 HOH A 14 1210 51 HOH HOH . F 4 HOH A 15 1211 54 HOH HOH . F 4 HOH A 16 1212 55 HOH HOH . F 4 HOH A 17 1213 57 HOH HOH . F 4 HOH A 18 1214 58 HOH HOH . F 4 HOH A 19 1215 63 HOH HOH . F 4 HOH A 20 1216 64 HOH HOH . F 4 HOH A 21 1217 68 HOH HOH . F 4 HOH A 22 1218 69 HOH HOH . F 4 HOH A 23 1219 72 HOH HOH . F 4 HOH A 24 1220 83 HOH HOH . F 4 HOH A 25 1221 84 HOH HOH . F 4 HOH A 26 1222 91 HOH HOH . F 4 HOH A 27 1223 96 HOH HOH . F 4 HOH A 28 1224 100 HOH HOH . F 4 HOH A 29 1225 102 HOH HOH . F 4 HOH A 30 1226 112 HOH HOH . F 4 HOH A 31 1227 113 HOH HOH . F 4 HOH A 32 1228 114 HOH HOH . F 4 HOH A 33 1229 118 HOH HOH . F 4 HOH A 34 1230 119 HOH HOH . F 4 HOH A 35 1231 125 HOH HOH . F 4 HOH A 36 1232 132 HOH HOH . F 4 HOH A 37 1233 133 HOH HOH . F 4 HOH A 38 1234 137 HOH HOH . F 4 HOH A 39 1235 141 HOH HOH . F 4 HOH A 40 1236 143 HOH HOH . F 4 HOH A 41 1237 144 HOH HOH . F 4 HOH A 42 1238 145 HOH HOH . F 4 HOH A 43 1239 146 HOH HOH . F 4 HOH A 44 1240 148 HOH HOH . F 4 HOH A 45 1241 152 HOH HOH . F 4 HOH A 46 1242 154 HOH HOH . F 4 HOH A 47 1243 156 HOH HOH . F 4 HOH A 48 1244 159 HOH HOH . F 4 HOH A 49 1245 161 HOH HOH . F 4 HOH A 50 1246 163 HOH HOH . F 4 HOH A 51 1247 164 HOH HOH . F 4 HOH A 52 1248 165 HOH HOH . F 4 HOH A 53 1249 169 HOH HOH . F 4 HOH A 54 1250 170 HOH HOH . F 4 HOH A 55 1251 175 HOH HOH . F 4 HOH A 56 1252 176 HOH HOH . F 4 HOH A 57 1253 181 HOH HOH . F 4 HOH A 58 1254 183 HOH HOH . F 4 HOH A 59 1255 184 HOH HOH . F 4 HOH A 60 1256 186 HOH HOH . F 4 HOH A 61 1257 190 HOH HOH . F 4 HOH A 62 1258 195 HOH HOH . F 4 HOH A 63 1259 197 HOH HOH . F 4 HOH A 64 1260 202 HOH HOH . F 4 HOH A 65 1261 203 HOH HOH . F 4 HOH A 66 1262 204 HOH HOH . F 4 HOH A 67 1263 205 HOH HOH . F 4 HOH A 68 1264 219 HOH HOH . F 4 HOH A 69 1265 221 HOH HOH . F 4 HOH A 70 1266 223 HOH HOH . F 4 HOH A 71 1267 224 HOH HOH . F 4 HOH A 72 1268 229 HOH HOH . F 4 HOH A 73 1269 238 HOH HOH . F 4 HOH A 74 1270 239 HOH HOH . F 4 HOH A 75 1271 240 HOH HOH . G 4 HOH B 1 1196 1 HOH HOH . G 4 HOH B 2 1197 10 HOH HOH . G 4 HOH B 3 1198 11 HOH HOH . G 4 HOH B 4 1199 15 HOH HOH . G 4 HOH B 5 1200 16 HOH HOH . G 4 HOH B 6 1201 21 HOH HOH . G 4 HOH B 7 1202 22 HOH HOH . G 4 HOH B 8 1203 23 HOH HOH . G 4 HOH B 9 1204 26 HOH HOH . G 4 HOH B 10 1205 29 HOH HOH . G 4 HOH B 11 1206 33 HOH HOH . G 4 HOH B 12 1207 34 HOH HOH . G 4 HOH B 13 1208 35 HOH HOH . G 4 HOH B 14 1209 36 HOH HOH . G 4 HOH B 15 1210 39 HOH HOH . G 4 HOH B 16 1211 40 HOH HOH . G 4 HOH B 17 1212 41 HOH HOH . G 4 HOH B 18 1213 42 HOH HOH . G 4 HOH B 19 1214 46 HOH HOH . G 4 HOH B 20 1215 49 HOH HOH . G 4 HOH B 21 1216 50 HOH HOH . G 4 HOH B 22 1217 52 HOH HOH . G 4 HOH B 23 1218 56 HOH HOH . G 4 HOH B 24 1219 61 HOH HOH . G 4 HOH B 25 1220 62 HOH HOH . G 4 HOH B 26 1221 65 HOH HOH . G 4 HOH B 27 1222 70 HOH HOH . G 4 HOH B 28 1223 71 HOH HOH . G 4 HOH B 29 1224 74 HOH HOH . G 4 HOH B 30 1225 75 HOH HOH . G 4 HOH B 31 1226 77 HOH HOH . G 4 HOH B 32 1227 79 HOH HOH . G 4 HOH B 33 1228 81 HOH HOH . G 4 HOH B 34 1229 85 HOH HOH . G 4 HOH B 35 1230 86 HOH HOH . G 4 HOH B 36 1231 87 HOH HOH . G 4 HOH B 37 1232 90 HOH HOH . G 4 HOH B 38 1233 92 HOH HOH . G 4 HOH B 39 1234 93 HOH HOH . G 4 HOH B 40 1235 94 HOH HOH . G 4 HOH B 41 1236 95 HOH HOH . G 4 HOH B 42 1237 97 HOH HOH . G 4 HOH B 43 1238 105 HOH HOH . G 4 HOH B 44 1239 106 HOH HOH . G 4 HOH B 45 1240 109 HOH HOH . G 4 HOH B 46 1241 116 HOH HOH . G 4 HOH B 47 1242 117 HOH HOH . G 4 HOH B 48 1243 120 HOH HOH . G 4 HOH B 49 1244 121 HOH HOH . G 4 HOH B 50 1245 122 HOH HOH . G 4 HOH B 51 1246 124 HOH HOH . G 4 HOH B 52 1247 126 HOH HOH . G 4 HOH B 53 1248 128 HOH HOH . G 4 HOH B 54 1249 131 HOH HOH . G 4 HOH B 55 1250 142 HOH HOH . G 4 HOH B 56 1251 150 HOH HOH . G 4 HOH B 57 1252 151 HOH HOH . G 4 HOH B 58 1253 153 HOH HOH . G 4 HOH B 59 1254 157 HOH HOH . G 4 HOH B 60 1255 166 HOH HOH . G 4 HOH B 61 1256 167 HOH HOH . G 4 HOH B 62 1257 171 HOH HOH . G 4 HOH B 63 1258 172 HOH HOH . G 4 HOH B 64 1259 174 HOH HOH . G 4 HOH B 65 1260 178 HOH HOH . G 4 HOH B 66 1261 180 HOH HOH . G 4 HOH B 67 1262 182 HOH HOH . G 4 HOH B 68 1263 185 HOH HOH . G 4 HOH B 69 1264 187 HOH HOH . G 4 HOH B 70 1265 189 HOH HOH . G 4 HOH B 71 1266 193 HOH HOH . G 4 HOH B 72 1267 196 HOH HOH . G 4 HOH B 73 1268 210 HOH HOH . G 4 HOH B 74 1269 213 HOH HOH . G 4 HOH B 75 1270 217 HOH HOH . G 4 HOH B 76 1271 220 HOH HOH . G 4 HOH B 77 1272 222 HOH HOH . G 4 HOH B 78 1273 228 HOH HOH . G 4 HOH B 79 1274 230 HOH HOH . G 4 HOH B 80 1275 231 HOH HOH . G 4 HOH B 81 1276 232 HOH HOH . G 4 HOH B 82 1277 233 HOH HOH . G 4 HOH B 83 1278 234 HOH HOH . H 4 HOH C 1 158 2 HOH HOH . H 4 HOH C 2 159 4 HOH HOH . H 4 HOH C 3 160 5 HOH HOH . H 4 HOH C 4 161 6 HOH HOH . H 4 HOH C 5 162 13 HOH HOH . H 4 HOH C 6 163 17 HOH HOH . H 4 HOH C 7 164 18 HOH HOH . H 4 HOH C 8 165 19 HOH HOH . H 4 HOH C 9 166 20 HOH HOH . H 4 HOH C 10 167 28 HOH HOH . H 4 HOH C 11 168 30 HOH HOH . H 4 HOH C 12 169 32 HOH HOH . H 4 HOH C 13 170 37 HOH HOH . H 4 HOH C 14 171 44 HOH HOH . H 4 HOH C 15 172 45 HOH HOH . H 4 HOH C 16 173 47 HOH HOH . H 4 HOH C 17 174 53 HOH HOH . H 4 HOH C 18 175 59 HOH HOH . H 4 HOH C 19 176 60 HOH HOH . H 4 HOH C 20 177 66 HOH HOH . H 4 HOH C 21 178 67 HOH HOH . H 4 HOH C 22 179 73 HOH HOH . H 4 HOH C 23 180 76 HOH HOH . H 4 HOH C 24 181 78 HOH HOH . H 4 HOH C 25 182 80 HOH HOH . H 4 HOH C 26 183 82 HOH HOH . H 4 HOH C 27 184 88 HOH HOH . H 4 HOH C 28 185 89 HOH HOH . H 4 HOH C 29 186 98 HOH HOH . H 4 HOH C 30 187 99 HOH HOH . H 4 HOH C 31 188 101 HOH HOH . H 4 HOH C 32 189 103 HOH HOH . H 4 HOH C 33 190 104 HOH HOH . H 4 HOH C 34 191 107 HOH HOH . H 4 HOH C 35 192 108 HOH HOH . H 4 HOH C 36 193 110 HOH HOH . H 4 HOH C 37 194 111 HOH HOH . H 4 HOH C 38 195 115 HOH HOH . H 4 HOH C 39 196 123 HOH HOH . H 4 HOH C 40 197 127 HOH HOH . H 4 HOH C 41 198 129 HOH HOH . H 4 HOH C 42 199 130 HOH HOH . H 4 HOH C 43 200 134 HOH HOH . H 4 HOH C 44 201 135 HOH HOH . H 4 HOH C 45 202 136 HOH HOH . H 4 HOH C 46 203 138 HOH HOH . H 4 HOH C 47 204 139 HOH HOH . H 4 HOH C 48 205 140 HOH HOH . H 4 HOH C 49 206 147 HOH HOH . H 4 HOH C 50 207 149 HOH HOH . H 4 HOH C 51 208 155 HOH HOH . H 4 HOH C 52 209 158 HOH HOH . H 4 HOH C 53 210 160 HOH HOH . H 4 HOH C 54 211 162 HOH HOH . H 4 HOH C 55 212 168 HOH HOH . H 4 HOH C 56 213 173 HOH HOH . H 4 HOH C 57 214 177 HOH HOH . H 4 HOH C 58 215 179 HOH HOH . H 4 HOH C 59 216 188 HOH HOH . H 4 HOH C 60 217 191 HOH HOH . H 4 HOH C 61 218 192 HOH HOH . H 4 HOH C 62 219 194 HOH HOH . H 4 HOH C 63 220 198 HOH HOH . H 4 HOH C 64 221 199 HOH HOH . H 4 HOH C 65 222 200 HOH HOH . H 4 HOH C 66 223 201 HOH HOH . H 4 HOH C 67 224 206 HOH HOH . H 4 HOH C 68 225 207 HOH HOH . H 4 HOH C 69 226 208 HOH HOH . H 4 HOH C 70 227 209 HOH HOH . H 4 HOH C 71 228 211 HOH HOH . H 4 HOH C 72 229 212 HOH HOH . H 4 HOH C 73 230 214 HOH HOH . H 4 HOH C 74 231 215 HOH HOH . H 4 HOH C 75 232 216 HOH HOH . H 4 HOH C 76 233 218 HOH HOH . H 4 HOH C 77 234 225 HOH HOH . H 4 HOH C 78 235 226 HOH HOH . H 4 HOH C 79 236 227 HOH HOH . H 4 HOH C 80 237 235 HOH HOH . H 4 HOH C 81 238 236 HOH HOH . H 4 HOH C 82 239 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 2 -10.858 44.914 -49.755 1 19.68 ? C TRS 1196 A 1 HETATM 2 C C1 TRS . . . D 2 -10.067 44.13 -50.804 1 19.85 ? C1 TRS 1196 A 1 HETATM 3 C C2 TRS . . . D 2 -11.577 43.998 -48.991 1 19.89 ? C2 TRS 1196 A 1 HETATM 4 C C3 TRS . . . D 2 -11.688 45.942 -50.524 1 20.78 ? C3 TRS 1196 A 1 HETATM 5 N N TRS . . . D 2 -9.911 45.613 -48.875 1 24.32 ? N TRS 1196 A 1 HETATM 6 O O1 TRS . . . D 2 -9.028 44.846 -51.279 1 13.84 ? O1 TRS 1196 A 1 HETATM 7 O O2 TRS . . . D 2 -10.945 43.454 -47.886 1 11.86 ? O2 TRS 1196 A 1 HETATM 8 O O3 TRS . . . D 2 -12.482 46.796 -49.758 1 13.08 ? O3 TRS 1196 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #