data_2TOB # _model_server_result.job_id J8LobKTYq8NW82rDM5qu1w _model_server_result.datetime_utc '2025-09-07 17:48:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2tob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":100}' # _entry.id 2TOB # _exptl.entry_id 2TOB _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 180.179 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 3-ammonio-3-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2TOB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 TOA . A TOA 100 1_555 D O6 2TB . A 2TB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale2 D O4 2TB . A 2TB 101 1_555 C C1 TOC . A TOC 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? hydrog WATSON-CRICK hydrog1 A N1 A 1 A A 4 1_555 A N3 U 20 A U 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 A 1 A A 4 1_555 A O4 U 20 A U 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 C 2 A C 5 1_555 A N1 G 19 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 C 2 A C 5 1_555 A O6 G 19 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 C 2 A C 5 1_555 A N2 G 19 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 U 3 A U 6 1_555 A N1 A 18 A A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 U 3 A U 6 1_555 A N6 A 18 A A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog8 A N3 U 4 A U 7 1_555 A O6 G 17 A G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog9 A O2 U 4 A U 7 1_555 A N1 G 17 A G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog10 A O6 G 5 A G 8 1_555 A N3 U 16 A U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog11 A N1 G 6 A G 9 1_555 A N1 A 15 A A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog12 A O6 G 6 A G 9 1_555 A N6 A 15 A A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog13 A N1 G 6 A G 9 1_555 A O2 U 16 A U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog14 A O6 G 6 A G 9 1_555 A N3 U 16 A U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 U 7 A U 10 1_555 A N1 A 14 A A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 U 7 A U 10 1_555 A N6 A 14 A A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog17 A N3 U 8 A U 11 1_555 A O4 U 13 A U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog18 A O2 U 8 A U 11 1_555 A N3 U 13 A U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H14 N O5 1' _chem_comp.formula_weight 180.179 _chem_comp.id TOA _chem_comp.mon_nstd_flag . _chem_comp.name 3-ammonio-3-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms '3-DEOXY-3-AMINO GLUCOSE;3-ammonio-3-deoxy-alpha-D-glucose;3-ammonio-3-deoxy-D-glucose;3-ammonio-3-deoxy-glucose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TOA sing 143 n n C1 O1 TOA sing 144 n n C1 O5 TOA sing 145 n n C1 H1 TOA sing 146 n n C2 C3 TOA sing 147 n n C2 O2 TOA sing 148 n n C2 H2 TOA sing 149 n n C3 C4 TOA sing 150 n n C3 N3 TOA sing 151 n n C3 H3 TOA sing 152 n n C4 C5 TOA sing 153 n n C4 O4 TOA sing 154 n n C4 H4 TOA sing 155 n n C5 C6 TOA sing 156 n n C5 O5 TOA sing 157 n n C5 H5 TOA sing 158 n n C6 O6 TOA sing 159 n n C6 H61 TOA sing 160 n n C6 H62 TOA sing 161 n n O1 HO1 TOA sing 162 n n O2 HO2 TOA sing 163 n n N3 HN31 TOA sing 164 n n N3 HN32 TOA sing 165 n n N3 HN33 TOA sing 166 n n O4 HO4 TOA sing 167 n n O6 HO6 TOA sing 168 n n # _pdbx_chem_comp_identifier.comp_id TOA _pdbx_chem_comp_identifier.identifier a-D-Glcp3N _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2TOB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOA A 1 100 100 TOA TOA . C 3 TOC A 1 102 102 TOC TOC . D 4 2TB A 1 101 101 2TB 2TB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOA . . . B 2 -8.198 0.406 -7.782 1 0.33 ? C1 TOA 100 A 1 HETATM 2 C C2 TOA . . . B 2 -7.615 1.758 -8.181 1 0.37 ? C2 TOA 100 A 1 HETATM 3 C C3 TOA . . . B 2 -6.967 1.631 -9.56 1 0.39 ? C3 TOA 100 A 1 HETATM 4 C C4 TOA . . . B 2 -5.929 0.501 -9.574 1 0.41 ? C4 TOA 100 A 1 HETATM 5 C C5 TOA . . . B 2 -6.555 -0.792 -9.04 1 0.37 ? C5 TOA 100 A 1 HETATM 6 C C6 TOA . . . B 2 -5.574 -1.941 -8.874 1 0.42 ? C6 TOA 100 A 1 HETATM 7 O O2 TOA . . . B 2 -8.646 2.741 -8.22 1 0.38 ? O2 TOA 100 A 1 HETATM 8 N N3 TOA . . . B 2 -6.315 2.851 -10.133 1 0.43 ? N3 TOA 100 A 1 HETATM 9 O O4 TOA . . . B 2 -5.477 0.305 -10.908 1 0.46 ? O4 TOA 100 A 1 HETATM 10 O O5 TOA . . . B 2 -7.156 -0.551 -7.752 1 0.36 ? O5 TOA 100 A 1 HETATM 11 O O6 TOA . . . B 2 -6.228 -3.095 -8.356 1 0.43 ? O6 TOA 100 A 1 HETATM 12 H H1 TOA . . . B 2 -8.644 0.431 -6.77 1 0.32 ? H1 TOA 100 A 1 HETATM 13 H H2 TOA . . . B 2 -6.844 2.014 -7.45 1 0.42 ? H2 TOA 100 A 1 HETATM 14 H H3 TOA . . . B 2 -7.753 1.303 -10.241 1 0.37 ? H3 TOA 100 A 1 HETATM 15 H H4 TOA . . . B 2 -5.091 0.773 -8.922 1 0.46 ? H4 TOA 100 A 1 HETATM 16 H H5 TOA . . . B 2 -7.342 -1.121 -9.735 1 0.36 ? H5 TOA 100 A 1 HETATM 17 H H61 TOA . . . B 2 -4.742 -1.638 -8.231 1 0.51 ? H61 TOA 100 A 1 HETATM 18 H H62 TOA . . . B 2 -5.067 -2.188 -9.825 1 0.44 ? H62 TOA 100 A 1 HETATM 19 H HO2 TOA . . . B 2 -8.887 3.046 -7.335 1 0.43 ? HO2 TOA 100 A 1 HETATM 20 H HN31 TOA . . . B 2 -7.036 3.518 -10.492 1 0.49 ? HN31 TOA 100 A 1 HETATM 21 H HN32 TOA . . . B 2 -5.674 3.376 -9.493 1 0.48 ? HN32 TOA 100 A 1 HETATM 22 H HN33 TOA . . . B 2 -5.778 2.517 -10.961 1 0.45 ? HN33 TOA 100 A 1 HETATM 23 H HO4 TOA . . . B 2 -4.82 -0.405 -11.011 1 0.51 ? HO4 TOA 100 A 1 HETATM 24 H HO6 TOA . . . B 2 -5.746 -3.395 -7.563 1 0.51 ? HO6 TOA 100 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 4024 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #