data_2TOB # _model_server_result.job_id frCtJVfkBZ5UF6Wz-M5sTg _model_server_result.datetime_utc '2025-09-06 20:11:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2tob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 2TOB # _exptl.entry_id 2TOB _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 164.203 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2,6-diammonio-2,3,6-trideoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2TOB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 TOA . A TOA 100 1_555 D O6 2TB . A 2TB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale2 D O4 2TB . A 2TB 101 1_555 C C1 TOC . A TOC 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? hydrog WATSON-CRICK hydrog1 A N1 A 1 A A 4 1_555 A N3 U 20 A U 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 A 1 A A 4 1_555 A O4 U 20 A U 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 C 2 A C 5 1_555 A N1 G 19 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 C 2 A C 5 1_555 A O6 G 19 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 C 2 A C 5 1_555 A N2 G 19 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 U 3 A U 6 1_555 A N1 A 18 A A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 U 3 A U 6 1_555 A N6 A 18 A A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog8 A N3 U 4 A U 7 1_555 A O6 G 17 A G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog9 A O2 U 4 A U 7 1_555 A N1 G 17 A G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog10 A O6 G 5 A G 8 1_555 A N3 U 16 A U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog11 A N1 G 6 A G 9 1_555 A N1 A 15 A A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog12 A O6 G 6 A G 9 1_555 A N6 A 15 A A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog13 A N1 G 6 A G 9 1_555 A O2 U 16 A U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog14 A O6 G 6 A G 9 1_555 A N3 U 16 A U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 U 7 A U 10 1_555 A N1 A 14 A A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 U 7 A U 10 1_555 A N6 A 14 A A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog17 A N3 U 8 A U 11 1_555 A O4 U 13 A U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog18 A O2 U 8 A U 11 1_555 A N3 U 13 A U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H16 N2 O3 2' _chem_comp.formula_weight 164.203 _chem_comp.id TOC _chem_comp.mon_nstd_flag . _chem_comp.name 2,6-diammonio-2,3,6-trideoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms '2,3,6-TRIDEOXY-2,6-DIAMINO GLUCOSE;2,6-diammonio-2,3,6-trideoxy-alpha-D-glucose;2,6-diammonio-2,3,6-trideoxy-D-glucose;2,6-diammonio-2,3,6-trideoxy-glucose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TOC sing 169 n n C1 O1 TOC sing 170 n n C1 O5 TOC sing 171 n n C1 H1 TOC sing 172 n n C2 C3 TOC sing 173 n n C2 N2 TOC sing 174 n n C2 H2 TOC sing 175 n n C3 C4 TOC sing 176 n n C3 H3 TOC sing 177 n n C3 H32 TOC sing 178 n n C4 C5 TOC sing 179 n n C4 O4 TOC sing 180 n n C4 H4 TOC sing 181 n n C5 C6 TOC sing 182 n n C5 O5 TOC sing 183 n n C5 H5 TOC sing 184 n n C6 N6 TOC sing 185 n n C6 H61 TOC sing 186 n n C6 H62 TOC sing 187 n n N2 HN21 TOC sing 188 n n N2 HN22 TOC sing 189 n n N2 HN23 TOC sing 190 n n N6 HN61 TOC sing 191 n n N6 HN62 TOC sing 192 n n N6 HN63 TOC sing 193 n n O1 HO1 TOC sing 194 n n O4 HO4 TOC sing 195 n n # _pdbx_chem_comp_identifier.comp_id TOC _pdbx_chem_comp_identifier.identifier a-D-3-deoxy-GlcpN6N _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2TOB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOA A 1 100 100 TOA TOA . C 3 TOC A 1 102 102 TOC TOC . D 4 2TB A 1 101 101 2TB 2TB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOC . . . C 3 -10.721 -4.75 -6.739 1 0.25 ? C1 TOC 102 A 1 HETATM 2 C C2 TOC . . . C 3 -9.521 -5.658 -7.028 1 0.26 ? C2 TOC 102 A 1 HETATM 3 C C3 TOC . . . C 3 -9.977 -7.02 -7.552 1 0.3 ? C3 TOC 102 A 1 HETATM 4 C C4 TOC . . . C 3 -10.99 -7.608 -6.583 1 0.36 ? C4 TOC 102 A 1 HETATM 5 C C5 TOC . . . C 3 -12.161 -6.651 -6.443 1 0.34 ? C5 TOC 102 A 1 HETATM 6 C C6 TOC . . . C 3 -13.213 -7.187 -5.489 1 0.43 ? C6 TOC 102 A 1 HETATM 7 N N2 TOC . . . C 3 -8.637 -5.007 -8.047 1 0.26 ? N2 TOC 102 A 1 HETATM 8 N N6 TOC . . . C 3 -13.666 -8.527 -6.001 1 0.48 ? N6 TOC 102 A 1 HETATM 9 O O4 TOC . . . C 3 -11.447 -8.869 -7.051 1 0.45 ? O4 TOC 102 A 1 HETATM 10 O O5 TOC . . . C 3 -11.69 -5.397 -5.921 1 0.3 ? O5 TOC 102 A 1 HETATM 11 H H1 TOC . . . C 3 -10.407 -3.893 -6.111 1 0.28 ? H1 TOC 102 A 1 HETATM 12 H H2 TOC . . . C 3 -8.981 -5.756 -6.073 1 0.33 ? H2 TOC 102 A 1 HETATM 13 H H3 TOC . . . C 3 -9.112 -7.685 -7.695 1 0.36 ? H3 TOC 102 A 1 HETATM 14 H H32 TOC . . . C 3 -10.468 -6.905 -8.529 1 0.32 ? H32 TOC 102 A 1 HETATM 15 H H4 TOC . . . C 3 -10.523 -7.595 -5.588 1 0.39 ? H4 TOC 102 A 1 HETATM 16 H H5 TOC . . . C 3 -12.59 -6.416 -7.429 1 0.33 ? H5 TOC 102 A 1 HETATM 17 H H61 TOC . . . C 3 -14.071 -6.497 -5.442 1 0.49 ? H61 TOC 102 A 1 HETATM 18 H H62 TOC . . . C 3 -12.786 -7.299 -4.48 1 0.49 ? H62 TOC 102 A 1 HETATM 19 H HN21 TOC . . . C 3 -7.71 -5.477 -8.15 1 0.48 ? HN21 TOC 102 A 1 HETATM 20 H HN22 TOC . . . C 3 -9.105 -4.96 -8.977 1 0.3 ? HN22 TOC 102 A 1 HETATM 21 H HN23 TOC . . . C 3 -8.464 -4.017 -7.749 1 0.36 ? HN23 TOC 102 A 1 HETATM 22 H HN61 TOC . . . C 3 -14.214 -9.064 -5.298 1 0.57 ? HN61 TOC 102 A 1 HETATM 23 H HN62 TOC . . . C 3 -14.208 -8.46 -6.885 1 0.5 ? HN62 TOC 102 A 1 HETATM 24 H HN63 TOC . . . C 3 -12.777 -9.047 -6.247 1 0.49 ? HN63 TOC 102 A 1 HETATM 25 H HO4 TOC . . . C 3 -10.702 -9.502 -7.166 1 0.48 ? HO4 TOC 102 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 3429 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #