data_2TOH # _model_server_result.job_id hhMpyZFmYZK1TfxGobfiuA _model_server_result.datetime_utc '2024-11-24 00:50:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2toh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 2TOH # _exptl.entry_id 2TOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.231 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7,8-DIHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2TOH _cell.length_a 189.464 _cell.length_b 148.595 _cell.length_c 56.986 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_556 x,-y+1/2,-z+3/2 1 0 0 0 -1 0 0 0 -1 0 74.2975 85.479 3 'crystal symmetry operation' 11_556 -x+1/2,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 94.732 0 85.479 4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 94.732 74.2975 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 144 A ASP 299 1_555 A N MTY 145 A MTY 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MTY 145 A MTY 300 1_555 A N LEU 146 A LEU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? metalc ? metalc1 A NE2 HIS 176 A HIS 331 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 A NE2 HIS 181 A HIS 336 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 A OE2 GLU 221 A GLU 376 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 A OE1 GLU 221 A GLU 376 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc5 B FE FE . A FE 501 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 B FE FE . A FE 501 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C9 H13 N5 O3' _chem_comp.formula_weight 239.231 _chem_comp.id HBI _chem_comp.mon_nstd_flag . _chem_comp.name 7,8-DIHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HBI doub 129 n y N1 C8A HBI sing 130 n y N2 C2 HBI sing 131 n n N2 HN21 HBI sing 132 n n N2 HN22 HBI sing 133 n n C2 N3 HBI sing 134 n y N3 C4 HBI sing 135 n y N3 H3 HBI sing 136 n n C4 O4 HBI doub 137 n n C4 C4A HBI sing 138 n y C4A C8A HBI doub 139 n y C4A N5 HBI sing 140 n n C8A N8 HBI sing 141 n n N8 C7 HBI sing 142 n n N8 H8 HBI sing 143 n n C7 C6 HBI sing 144 n n C7 H71 HBI sing 145 n n C7 H72 HBI sing 146 n n C6 N5 HBI doub 147 n n C6 C9 HBI sing 148 n n C9 O9 HBI sing 149 n n C9 C10 HBI sing 150 n n C9 H9 HBI sing 151 n n O9 HO9 HBI sing 152 n n C10 O10 HBI sing 153 n n C10 C11 HBI sing 154 n n C10 H10 HBI sing 155 n n O10 HO1 HBI sing 156 n n C11 H111 HBI sing 157 n n C11 H112 HBI sing 158 n n C11 H113 HBI sing 159 n n # _atom_sites.entry_id 2TOH _atom_sites.fract_transf_matrix[1][1] 0.005278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 501 501 FE FE . C 3 CL A 1 510 510 CL CL . D 4 HBI A 1 500 500 HBI HBI . E 5 HOH A 1 601 601 HOH HOH . E 5 HOH A 2 602 602 HOH HOH . E 5 HOH A 3 603 603 HOH HOH . E 5 HOH A 4 604 604 HOH HOH . E 5 HOH A 5 605 605 HOH HOH . E 5 HOH A 6 606 606 HOH HOH . E 5 HOH A 7 607 607 HOH HOH . E 5 HOH A 8 608 608 HOH HOH . E 5 HOH A 9 609 609 HOH HOH . E 5 HOH A 10 610 610 HOH HOH . E 5 HOH A 11 611 611 HOH HOH . E 5 HOH A 12 612 612 HOH HOH . E 5 HOH A 13 613 613 HOH HOH . E 5 HOH A 14 614 614 HOH HOH . E 5 HOH A 15 615 615 HOH HOH . E 5 HOH A 16 616 616 HOH HOH . E 5 HOH A 17 617 617 HOH HOH . E 5 HOH A 18 618 618 HOH HOH . E 5 HOH A 19 619 619 HOH HOH . E 5 HOH A 20 620 620 HOH HOH . E 5 HOH A 21 621 621 HOH HOH . E 5 HOH A 22 622 622 HOH HOH . E 5 HOH A 23 623 623 HOH HOH . E 5 HOH A 24 624 624 HOH HOH . E 5 HOH A 25 625 625 HOH HOH . E 5 HOH A 26 626 626 HOH HOH . E 5 HOH A 27 627 627 HOH HOH . E 5 HOH A 28 628 628 HOH HOH . E 5 HOH A 29 629 629 HOH HOH . E 5 HOH A 30 630 630 HOH HOH . E 5 HOH A 31 631 631 HOH HOH . E 5 HOH A 32 632 632 HOH HOH . E 5 HOH A 33 633 633 HOH HOH . E 5 HOH A 34 634 634 HOH HOH . E 5 HOH A 35 635 635 HOH HOH . E 5 HOH A 36 636 636 HOH HOH . E 5 HOH A 37 637 637 HOH HOH . E 5 HOH A 38 638 638 HOH HOH . E 5 HOH A 39 639 639 HOH HOH . E 5 HOH A 40 640 640 HOH HOH . E 5 HOH A 41 641 641 HOH HOH . E 5 HOH A 42 642 642 HOH HOH . E 5 HOH A 43 643 643 HOH HOH . E 5 HOH A 44 644 644 HOH HOH . E 5 HOH A 45 645 645 HOH HOH . E 5 HOH A 46 646 646 HOH HOH . E 5 HOH A 47 647 647 HOH HOH . E 5 HOH A 48 648 648 HOH HOH . E 5 HOH A 49 649 649 HOH HOH . E 5 HOH A 50 650 650 HOH HOH . E 5 HOH A 51 652 652 HOH HOH . E 5 HOH A 52 653 653 HOH HOH . E 5 HOH A 53 654 654 HOH HOH . E 5 HOH A 54 655 655 HOH HOH . E 5 HOH A 55 656 656 HOH HOH . E 5 HOH A 56 657 657 HOH HOH . E 5 HOH A 57 658 658 HOH HOH . E 5 HOH A 58 659 659 HOH HOH . E 5 HOH A 59 660 660 HOH HOH . E 5 HOH A 60 661 661 HOH HOH . E 5 HOH A 61 662 662 HOH HOH . E 5 HOH A 62 663 663 HOH HOH . E 5 HOH A 63 664 664 HOH HOH . E 5 HOH A 64 665 665 HOH HOH . E 5 HOH A 65 666 666 HOH HOH . E 5 HOH A 66 667 667 HOH HOH . E 5 HOH A 67 668 668 HOH HOH . E 5 HOH A 68 669 669 HOH HOH . E 5 HOH A 69 670 670 HOH HOH . E 5 HOH A 70 671 671 HOH HOH . E 5 HOH A 71 672 672 HOH HOH . E 5 HOH A 72 673 673 HOH HOH . E 5 HOH A 73 674 674 HOH HOH . E 5 HOH A 74 675 675 HOH HOH . E 5 HOH A 75 676 676 HOH HOH . E 5 HOH A 76 677 677 HOH HOH . E 5 HOH A 77 678 678 HOH HOH . E 5 HOH A 78 679 679 HOH HOH . E 5 HOH A 79 680 680 HOH HOH . E 5 HOH A 80 681 681 HOH HOH . E 5 HOH A 81 682 682 HOH HOH . E 5 HOH A 82 683 683 HOH HOH . E 5 HOH A 83 684 684 HOH HOH . E 5 HOH A 84 685 685 HOH HOH . E 5 HOH A 85 686 686 HOH HOH . E 5 HOH A 86 687 687 HOH HOH . E 5 HOH A 87 688 688 HOH HOH . E 5 HOH A 88 689 689 HOH HOH . E 5 HOH A 89 690 690 HOH HOH . E 5 HOH A 90 691 691 HOH HOH . E 5 HOH A 91 692 692 HOH HOH . E 5 HOH A 92 693 693 HOH HOH . E 5 HOH A 93 694 694 HOH HOH . E 5 HOH A 94 695 695 HOH HOH . E 5 HOH A 95 696 696 HOH HOH . E 5 HOH A 96 697 697 HOH HOH . E 5 HOH A 97 698 698 HOH HOH . E 5 HOH A 98 699 699 HOH HOH . E 5 HOH A 99 704 704 HOH HOH . E 5 HOH A 100 705 705 HOH HOH . E 5 HOH A 101 706 706 HOH HOH . E 5 HOH A 102 707 707 HOH HOH . E 5 HOH A 103 708 708 HOH HOH . E 5 HOH A 104 709 709 HOH HOH . E 5 HOH A 105 710 710 HOH HOH . E 5 HOH A 106 711 711 HOH HOH . E 5 HOH A 107 712 712 HOH HOH . E 5 HOH A 108 713 713 HOH HOH . E 5 HOH A 109 714 714 HOH HOH . E 5 HOH A 110 715 715 HOH HOH . E 5 HOH A 111 716 716 HOH HOH . E 5 HOH A 112 717 717 HOH HOH . E 5 HOH A 113 718 718 HOH HOH . E 5 HOH A 114 719 719 HOH HOH . E 5 HOH A 115 720 720 HOH HOH . E 5 HOH A 116 721 721 HOH HOH . E 5 HOH A 117 722 722 HOH HOH . E 5 HOH A 118 723 723 HOH HOH . E 5 HOH A 119 724 724 HOH HOH . E 5 HOH A 120 725 725 HOH HOH . E 5 HOH A 121 726 726 HOH HOH . E 5 HOH A 122 727 727 HOH HOH . E 5 HOH A 123 728 728 HOH HOH . E 5 HOH A 124 729 729 HOH HOH . E 5 HOH A 125 730 730 HOH HOH . E 5 HOH A 126 731 731 HOH HOH . E 5 HOH A 127 732 732 HOH HOH . E 5 HOH A 128 733 733 HOH HOH . E 5 HOH A 129 734 734 HOH HOH . E 5 HOH A 130 735 735 HOH HOH . E 5 HOH A 131 736 736 HOH HOH . E 5 HOH A 132 737 737 HOH HOH . E 5 HOH A 133 738 738 HOH HOH . E 5 HOH A 134 739 739 HOH HOH . E 5 HOH A 135 740 740 HOH HOH . E 5 HOH A 136 741 741 HOH HOH . E 5 HOH A 137 742 742 HOH HOH . E 5 HOH A 138 743 743 HOH HOH . E 5 HOH A 139 744 744 HOH HOH . E 5 HOH A 140 745 745 HOH HOH . E 5 HOH A 141 746 746 HOH HOH . E 5 HOH A 142 747 747 HOH HOH . E 5 HOH A 143 748 748 HOH HOH . E 5 HOH A 144 749 749 HOH HOH . E 5 HOH A 145 750 750 HOH HOH . E 5 HOH A 146 751 751 HOH HOH . E 5 HOH A 147 752 752 HOH HOH . E 5 HOH A 148 753 753 HOH HOH . E 5 HOH A 149 754 754 HOH HOH . E 5 HOH A 150 755 755 HOH HOH . E 5 HOH A 151 756 756 HOH HOH . E 5 HOH A 152 757 757 HOH HOH . E 5 HOH A 153 758 758 HOH HOH . E 5 HOH A 154 759 759 HOH HOH . E 5 HOH A 155 760 760 HOH HOH . E 5 HOH A 156 761 761 HOH HOH . E 5 HOH A 157 762 762 HOH HOH . E 5 HOH A 158 763 763 HOH HOH . E 5 HOH A 159 764 764 HOH HOH . E 5 HOH A 160 765 765 HOH HOH . E 5 HOH A 161 766 766 HOH HOH . E 5 HOH A 162 767 767 HOH HOH . E 5 HOH A 163 768 768 HOH HOH . E 5 HOH A 164 769 769 HOH HOH . E 5 HOH A 165 770 770 HOH HOH . E 5 HOH A 166 772 772 HOH HOH . E 5 HOH A 167 773 773 HOH HOH . E 5 HOH A 168 774 774 HOH HOH . E 5 HOH A 169 775 775 HOH HOH . E 5 HOH A 170 776 776 HOH HOH . E 5 HOH A 171 777 777 HOH HOH . E 5 HOH A 172 778 778 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HBI . . . D 4 72.531 59.759 32.945 1 87.12 ? N1 HBI 500 A 1 HETATM 2 N N2 HBI . . . D 4 70.432 60.666 33.264 1 88.13 ? N2 HBI 500 A 1 HETATM 3 C C2 HBI . . . D 4 71.564 60.219 33.762 1 90.46 ? C2 HBI 500 A 1 HETATM 4 N N3 HBI . . . D 4 71.64 60.269 35.128 1 92.11 ? N3 HBI 500 A 1 HETATM 5 C C4 HBI . . . D 4 72.797 59.812 35.779 1 91.17 ? C4 HBI 500 A 1 HETATM 6 O O4 HBI . . . D 4 72.909 59.838 37.032 1 89.18 ? O4 HBI 500 A 1 HETATM 7 C C4A HBI . . . D 4 73.845 59.298 34.984 1 86.69 ? C4A HBI 500 A 1 HETATM 8 C C8A HBI . . . D 4 73.664 59.3 33.557 1 84.94 ? C8A HBI 500 A 1 HETATM 9 N N8 HBI . . . D 4 74.64 58.833 32.674 1 81.37 ? N8 HBI 500 A 1 HETATM 10 C C7 HBI . . . D 4 75.662 57.931 33.253 1 79.56 ? C7 HBI 500 A 1 HETATM 11 C C6 HBI . . . D 4 75.984 58.146 34.727 1 79.95 ? C6 HBI 500 A 1 HETATM 12 N N5 HBI . . . D 4 75.036 58.78 35.514 1 84.64 ? N5 HBI 500 A 1 HETATM 13 C C9 HBI . . . D 4 77.162 57.475 35.406 1 78.59 ? C9 HBI 500 A 1 HETATM 14 O O9 HBI . . . D 4 78.181 57.239 34.418 1 78.41 ? O9 HBI 500 A 1 HETATM 15 C C10 HBI . . . D 4 77.803 58.258 36.587 1 76.32 ? C10 HBI 500 A 1 HETATM 16 O O10 HBI . . . D 4 77.082 59.468 36.866 1 77.08 ? O10 HBI 500 A 1 HETATM 17 C C11 HBI . . . D 4 77.788 57.418 37.863 1 68.76 ? C11 HBI 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #