data_2TRC # _model_server_result.job_id SjBAYZ_IkD4HQC_TkR9RTw _model_server_result.datetime_utc '2025-03-05 22:02:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2trc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3}' # _entry.id 2TRC # _exptl.entry_id 2TRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ATOM' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2TRC _cell.length_a 75.7 _cell.length_b 88.51 _cell.length_c 98.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ARG 54 P ARG 67 1_555 C N MSE 55 P MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 C C MSE 55 P MSE 68 1_555 C N SER 56 P SER 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C LYS 58 P LYS 71 1_555 C N MSE 59 P MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 C C MSE 59 P MSE 72 1_555 C N SER 60 P SER 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 C C CYS 84 P CYS 97 1_555 C N MSE 85 P MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C MSE 85 P MSE 98 1_555 C N GLN 86 P GLN 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 C C ASP 87 P ASP 100 1_555 C N MSE 88 P MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 C C MSE 88 P MSE 101 1_555 C N HIS 89 P HIS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 C C PRO 150 P PRO 163 1_555 C N MSE 151 P MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 C C MSE 151 P MSE 164 1_555 C N VAL 152 P VAL 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A O GLN 44 B GLN 44 1_555 D GD GD . B GD 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc2 D GD GD . B GD 341 1_555 I O HOH . B HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc3 D GD GD . B GD 341 1_555 I O HOH . B HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc4 B OD2 ASP 42 G ASP 542 4_566 F GD GD . P GD 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc5 B OD1 ASP 42 G ASP 542 4_566 G GD GD . P GD 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc6 B OE1 GLU 46 G GLU 546 4_566 F GD GD . P GD 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc7 E GD GD . P GD 1 1_555 C OE1 GLU 148 P GLU 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc8 E GD GD . P GD 1 1_555 C OE1 GLU 205 P GLU 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc9 E GD GD . P GD 1 1_555 K O HOH . P HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc10 E GD GD . P GD 1 1_555 K O HOH . P HOH 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc11 F GD GD . P GD 2 1_555 K O HOH . P HOH 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc12 G GD GD . P GD 3 1_555 K O HOH . P HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc13 G GD GD . P GD 3 1_555 K O HOH . P HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc14 H GD GD . P GD 5 1_555 C OE2 GLU 210 P GLU 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? # _chem_comp.formula Gd _chem_comp.formula_weight 157.25 _chem_comp.id GD _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ATOM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2TRC _atom_sites.fract_transf_matrix[1][1] 0.01321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GD B 1 341 4 GD GD . E 4 GD P 1 1 1 GD GD . F 4 GD P 1 2 2 GD GD . G 4 GD P 1 3 3 GD GD . H 4 GD P 1 5 5 GD GD . I 5 HOH B 1 342 1 HOH HOH . I 5 HOH B 2 343 2 HOH HOH . I 5 HOH B 3 344 3 HOH HOH . I 5 HOH B 4 345 4 HOH HOH . I 5 HOH B 5 346 5 HOH HOH . I 5 HOH B 6 347 6 HOH HOH . I 5 HOH B 7 348 7 HOH HOH . I 5 HOH B 8 349 9 HOH HOH . I 5 HOH B 9 350 10 HOH HOH . I 5 HOH B 10 351 11 HOH HOH . I 5 HOH B 11 352 14 HOH HOH . I 5 HOH B 12 353 16 HOH HOH . I 5 HOH B 13 354 17 HOH HOH . I 5 HOH B 14 355 18 HOH HOH . I 5 HOH B 15 356 22 HOH HOH . I 5 HOH B 16 357 23 HOH HOH . I 5 HOH B 17 358 24 HOH HOH . I 5 HOH B 18 359 25 HOH HOH . I 5 HOH B 19 360 29 HOH HOH . I 5 HOH B 20 361 30 HOH HOH . I 5 HOH B 21 362 31 HOH HOH . I 5 HOH B 22 363 32 HOH HOH . I 5 HOH B 23 364 33 HOH HOH . I 5 HOH B 24 365 34 HOH HOH . I 5 HOH B 25 366 36 HOH HOH . I 5 HOH B 26 367 37 HOH HOH . I 5 HOH B 27 368 38 HOH HOH . I 5 HOH B 28 369 40 HOH HOH . I 5 HOH B 29 370 42 HOH HOH . I 5 HOH B 30 371 43 HOH HOH . I 5 HOH B 31 372 44 HOH HOH . I 5 HOH B 32 373 46 HOH HOH . I 5 HOH B 33 374 48 HOH HOH . I 5 HOH B 34 375 49 HOH HOH . I 5 HOH B 35 376 50 HOH HOH . I 5 HOH B 36 377 52 HOH HOH . I 5 HOH B 37 378 53 HOH HOH . I 5 HOH B 38 379 54 HOH HOH . I 5 HOH B 39 380 58 HOH HOH . I 5 HOH B 40 381 60 HOH HOH . I 5 HOH B 41 382 61 HOH HOH . I 5 HOH B 42 383 62 HOH HOH . I 5 HOH B 43 384 64 HOH HOH . I 5 HOH B 44 385 68 HOH HOH . I 5 HOH B 45 386 70 HOH HOH . I 5 HOH B 46 387 72 HOH HOH . I 5 HOH B 47 388 73 HOH HOH . I 5 HOH B 48 389 74 HOH HOH . I 5 HOH B 49 390 75 HOH HOH . I 5 HOH B 50 391 76 HOH HOH . I 5 HOH B 51 392 78 HOH HOH . I 5 HOH B 52 393 79 HOH HOH . I 5 HOH B 53 394 80 HOH HOH . I 5 HOH B 54 395 81 HOH HOH . I 5 HOH B 55 396 83 HOH HOH . I 5 HOH B 56 397 85 HOH HOH . I 5 HOH B 57 398 86 HOH HOH . I 5 HOH B 58 399 87 HOH HOH . I 5 HOH B 59 400 88 HOH HOH . I 5 HOH B 60 401 89 HOH HOH . I 5 HOH B 61 402 90 HOH HOH . I 5 HOH B 62 403 93 HOH HOH . I 5 HOH B 63 404 94 HOH HOH . I 5 HOH B 64 405 95 HOH HOH . I 5 HOH B 65 406 96 HOH HOH . I 5 HOH B 66 407 97 HOH HOH . I 5 HOH B 67 408 99 HOH HOH . I 5 HOH B 68 409 101 HOH HOH . I 5 HOH B 69 410 103 HOH HOH . I 5 HOH B 70 411 105 HOH HOH . I 5 HOH B 71 412 107 HOH HOH . I 5 HOH B 72 413 111 HOH HOH . I 5 HOH B 73 414 115 HOH HOH . I 5 HOH B 74 415 119 HOH HOH . I 5 HOH B 75 416 120 HOH HOH . I 5 HOH B 76 417 121 HOH HOH . I 5 HOH B 77 418 126 HOH HOH . I 5 HOH B 78 419 128 HOH HOH . I 5 HOH B 79 420 129 HOH HOH . I 5 HOH B 80 421 130 HOH HOH . I 5 HOH B 81 422 131 HOH HOH . I 5 HOH B 82 423 133 HOH HOH . I 5 HOH B 83 424 134 HOH HOH . I 5 HOH B 84 425 138 HOH HOH . I 5 HOH B 85 426 140 HOH HOH . I 5 HOH B 86 427 142 HOH HOH . I 5 HOH B 87 428 145 HOH HOH . I 5 HOH B 88 429 147 HOH HOH . I 5 HOH B 89 430 148 HOH HOH . I 5 HOH B 90 431 150 HOH HOH . I 5 HOH B 91 432 151 HOH HOH . I 5 HOH B 92 433 153 HOH HOH . I 5 HOH B 93 434 157 HOH HOH . I 5 HOH B 94 435 158 HOH HOH . I 5 HOH B 95 436 159 HOH HOH . I 5 HOH B 96 437 160 HOH HOH . I 5 HOH B 97 438 161 HOH HOH . I 5 HOH B 98 439 164 HOH HOH . I 5 HOH B 99 440 165 HOH HOH . I 5 HOH B 100 441 166 HOH HOH . I 5 HOH B 101 442 167 HOH HOH . I 5 HOH B 102 443 168 HOH HOH . I 5 HOH B 103 444 171 HOH HOH . I 5 HOH B 104 445 172 HOH HOH . I 5 HOH B 105 446 175 HOH HOH . I 5 HOH B 106 447 176 HOH HOH . I 5 HOH B 107 448 178 HOH HOH . I 5 HOH B 108 449 179 HOH HOH . I 5 HOH B 109 450 180 HOH HOH . I 5 HOH B 110 451 181 HOH HOH . I 5 HOH B 111 452 182 HOH HOH . I 5 HOH B 112 453 187 HOH HOH . I 5 HOH B 113 454 189 HOH HOH . I 5 HOH B 114 455 191 HOH HOH . I 5 HOH B 115 456 192 HOH HOH . I 5 HOH B 116 457 193 HOH HOH . I 5 HOH B 117 458 194 HOH HOH . I 5 HOH B 118 459 195 HOH HOH . I 5 HOH B 119 460 196 HOH HOH . I 5 HOH B 120 461 197 HOH HOH . I 5 HOH B 121 462 199 HOH HOH . I 5 HOH B 122 463 200 HOH HOH . I 5 HOH B 123 464 201 HOH HOH . I 5 HOH B 124 465 204 HOH HOH . I 5 HOH B 125 466 207 HOH HOH . I 5 HOH B 126 467 208 HOH HOH . I 5 HOH B 127 468 210 HOH HOH . I 5 HOH B 128 469 211 HOH HOH . I 5 HOH B 129 470 213 HOH HOH . I 5 HOH B 130 471 215 HOH HOH . I 5 HOH B 131 472 216 HOH HOH . I 5 HOH B 132 473 218 HOH HOH . I 5 HOH B 133 474 220 HOH HOH . I 5 HOH B 134 475 223 HOH HOH . I 5 HOH B 135 476 225 HOH HOH . I 5 HOH B 136 477 227 HOH HOH . I 5 HOH B 137 478 232 HOH HOH . I 5 HOH B 138 479 233 HOH HOH . I 5 HOH B 139 480 234 HOH HOH . J 5 HOH G 1 41 41 HOH HOH . J 5 HOH G 2 67 67 HOH HOH . J 5 HOH G 3 69 69 HOH HOH . J 5 HOH G 4 71 71 HOH HOH . J 5 HOH G 5 84 84 HOH HOH . J 5 HOH G 6 104 104 HOH HOH . J 5 HOH G 7 109 109 HOH HOH . J 5 HOH G 8 110 110 HOH HOH . J 5 HOH G 9 114 114 HOH HOH . J 5 HOH G 10 136 136 HOH HOH . J 5 HOH G 11 139 139 HOH HOH . J 5 HOH G 12 141 141 HOH HOH . J 5 HOH G 13 154 154 HOH HOH . J 5 HOH G 14 156 156 HOH HOH . J 5 HOH G 15 169 169 HOH HOH . J 5 HOH G 16 174 174 HOH HOH . J 5 HOH G 17 183 183 HOH HOH . J 5 HOH G 18 185 185 HOH HOH . J 5 HOH G 19 203 203 HOH HOH . J 5 HOH G 20 226 226 HOH HOH . K 5 HOH P 1 231 8 HOH HOH . K 5 HOH P 2 232 12 HOH HOH . K 5 HOH P 3 233 13 HOH HOH . K 5 HOH P 4 234 15 HOH HOH . K 5 HOH P 5 235 19 HOH HOH . K 5 HOH P 6 236 20 HOH HOH . K 5 HOH P 7 237 21 HOH HOH . K 5 HOH P 8 238 26 HOH HOH . K 5 HOH P 9 239 27 HOH HOH . K 5 HOH P 10 240 28 HOH HOH . K 5 HOH P 11 241 35 HOH HOH . K 5 HOH P 12 242 39 HOH HOH . K 5 HOH P 13 243 45 HOH HOH . K 5 HOH P 14 244 47 HOH HOH . K 5 HOH P 15 245 51 HOH HOH . K 5 HOH P 16 246 55 HOH HOH . K 5 HOH P 17 247 56 HOH HOH . K 5 HOH P 18 248 57 HOH HOH . K 5 HOH P 19 249 59 HOH HOH . K 5 HOH P 20 250 63 HOH HOH . K 5 HOH P 21 251 65 HOH HOH . K 5 HOH P 22 252 66 HOH HOH . K 5 HOH P 23 253 77 HOH HOH . K 5 HOH P 24 254 82 HOH HOH . K 5 HOH P 25 255 91 HOH HOH . K 5 HOH P 26 256 92 HOH HOH . K 5 HOH P 27 257 98 HOH HOH . K 5 HOH P 28 258 100 HOH HOH . K 5 HOH P 29 259 102 HOH HOH . K 5 HOH P 30 260 106 HOH HOH . K 5 HOH P 31 261 108 HOH HOH . K 5 HOH P 32 262 112 HOH HOH . K 5 HOH P 33 263 113 HOH HOH . K 5 HOH P 34 264 116 HOH HOH . K 5 HOH P 35 265 117 HOH HOH . K 5 HOH P 36 266 118 HOH HOH . K 5 HOH P 37 267 122 HOH HOH . K 5 HOH P 38 268 123 HOH HOH . K 5 HOH P 39 269 124 HOH HOH . K 5 HOH P 40 270 125 HOH HOH . K 5 HOH P 41 271 127 HOH HOH . K 5 HOH P 42 272 132 HOH HOH . K 5 HOH P 43 273 135 HOH HOH . K 5 HOH P 44 274 137 HOH HOH . K 5 HOH P 45 275 143 HOH HOH . K 5 HOH P 46 276 144 HOH HOH . K 5 HOH P 47 277 146 HOH HOH . K 5 HOH P 48 278 149 HOH HOH . K 5 HOH P 49 279 152 HOH HOH . K 5 HOH P 50 280 155 HOH HOH . K 5 HOH P 51 281 162 HOH HOH . K 5 HOH P 52 282 163 HOH HOH . K 5 HOH P 53 283 170 HOH HOH . K 5 HOH P 54 284 173 HOH HOH . K 5 HOH P 55 285 177 HOH HOH . K 5 HOH P 56 286 184 HOH HOH . K 5 HOH P 57 287 186 HOH HOH . K 5 HOH P 58 288 188 HOH HOH . K 5 HOH P 59 289 190 HOH HOH . K 5 HOH P 60 290 198 HOH HOH . K 5 HOH P 61 291 202 HOH HOH . K 5 HOH P 62 292 205 HOH HOH . K 5 HOH P 63 293 206 HOH HOH . K 5 HOH P 64 294 209 HOH HOH . K 5 HOH P 65 295 212 HOH HOH . K 5 HOH P 66 296 214 HOH HOH . K 5 HOH P 67 297 217 HOH HOH . K 5 HOH P 68 298 219 HOH HOH . K 5 HOH P 69 299 221 HOH HOH . K 5 HOH P 70 300 222 HOH HOH . K 5 HOH P 71 301 224 HOH HOH . K 5 HOH P 72 302 228 HOH HOH . K 5 HOH P 73 303 229 HOH HOH . K 5 HOH P 74 304 230 HOH HOH . K 5 HOH P 75 305 231 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 198.923 _atom_site.Cartn_y 63.394 _atom_site.Cartn_z 54.14 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD _atom_site.auth_seq_id 3 _atom_site.auth_asym_id P _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #