data_2TRM # _model_server_result.job_id pfoO2yxJMP6RY2Jx3DVDnQ _model_server_result.datetime_utc '2024-11-22 15:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2trm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":246}' # _entry.id 2TRM # _exptl.entry_id 2TRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2TRM _cell.length_a 124.38 _cell.length_b 124.38 _cell.length_c 124.38 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A OE2 GLU 52 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.274 ? metalc ? metalc3 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc4 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc5 A OE1 GLU 59 A GLU 77 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc6 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 2TRM _atom_sites.fract_transf_matrix[1][1] 0.00804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 BEN A 1 246 246 BEN BEN . D 4 HOH A 1 248 248 HOH HOH . D 4 HOH A 2 249 249 HOH HOH . D 4 HOH A 3 250 250 HOH HOH . D 4 HOH A 4 251 251 HOH HOH . D 4 HOH A 5 252 252 HOH HOH . D 4 HOH A 6 253 253 HOH HOH . D 4 HOH A 7 254 254 HOH HOH . D 4 HOH A 8 255 255 HOH HOH . D 4 HOH A 9 256 256 HOH HOH . D 4 HOH A 10 257 257 HOH HOH . D 4 HOH A 11 258 258 HOH HOH . D 4 HOH A 12 259 259 HOH HOH . D 4 HOH A 13 260 260 HOH HOH . D 4 HOH A 14 261 261 HOH HOH . D 4 HOH A 15 262 262 HOH HOH . D 4 HOH A 16 263 263 HOH HOH . D 4 HOH A 17 264 264 HOH HOH . D 4 HOH A 18 265 265 HOH HOH . D 4 HOH A 19 266 266 HOH HOH . D 4 HOH A 20 267 267 HOH HOH . D 4 HOH A 21 268 268 HOH HOH . D 4 HOH A 22 269 269 HOH HOH . D 4 HOH A 23 270 270 HOH HOH . D 4 HOH A 24 271 271 HOH HOH . D 4 HOH A 25 272 272 HOH HOH . D 4 HOH A 26 273 273 HOH HOH . D 4 HOH A 27 274 274 HOH HOH . D 4 HOH A 28 275 275 HOH HOH . D 4 HOH A 29 276 276 HOH HOH . D 4 HOH A 30 277 277 HOH HOH . D 4 HOH A 31 278 278 HOH HOH . D 4 HOH A 32 279 279 HOH HOH . D 4 HOH A 33 280 280 HOH HOH . D 4 HOH A 34 281 281 HOH HOH . D 4 HOH A 35 282 282 HOH HOH . D 4 HOH A 36 283 283 HOH HOH . D 4 HOH A 37 284 284 HOH HOH . D 4 HOH A 38 285 285 HOH HOH . D 4 HOH A 39 286 286 HOH HOH . D 4 HOH A 40 287 287 HOH HOH . D 4 HOH A 41 288 288 HOH HOH . D 4 HOH A 42 289 289 HOH HOH . D 4 HOH A 43 290 290 HOH HOH . D 4 HOH A 44 291 291 HOH HOH . D 4 HOH A 45 292 292 HOH HOH . D 4 HOH A 46 293 293 HOH HOH . D 4 HOH A 47 294 294 HOH HOH . D 4 HOH A 48 295 295 HOH HOH . D 4 HOH A 49 296 296 HOH HOH . D 4 HOH A 50 297 297 HOH HOH . D 4 HOH A 51 298 298 HOH HOH . D 4 HOH A 52 299 299 HOH HOH . D 4 HOH A 53 300 300 HOH HOH . D 4 HOH A 54 301 301 HOH HOH . D 4 HOH A 55 302 302 HOH HOH . D 4 HOH A 56 303 303 HOH HOH . D 4 HOH A 57 304 304 HOH HOH . D 4 HOH A 58 305 305 HOH HOH . D 4 HOH A 59 306 306 HOH HOH . D 4 HOH A 60 307 307 HOH HOH . D 4 HOH A 61 308 308 HOH HOH . D 4 HOH A 62 309 309 HOH HOH . D 4 HOH A 63 310 310 HOH HOH . D 4 HOH A 64 311 311 HOH HOH . D 4 HOH A 65 312 312 HOH HOH . D 4 HOH A 66 313 313 HOH HOH . D 4 HOH A 67 314 314 HOH HOH . D 4 HOH A 68 315 315 HOH HOH . D 4 HOH A 69 316 316 HOH HOH . D 4 HOH A 70 317 317 HOH HOH . D 4 HOH A 71 318 318 HOH HOH . D 4 HOH A 72 319 319 HOH HOH . D 4 HOH A 73 320 320 HOH HOH . D 4 HOH A 74 321 321 HOH HOH . D 4 HOH A 75 322 322 HOH HOH . D 4 HOH A 76 323 323 HOH HOH . D 4 HOH A 77 324 324 HOH HOH . D 4 HOH A 78 325 325 HOH HOH . D 4 HOH A 79 326 326 HOH HOH . D 4 HOH A 80 327 327 HOH HOH . D 4 HOH A 81 328 328 HOH HOH . D 4 HOH A 82 329 329 HOH HOH . D 4 HOH A 83 330 330 HOH HOH . D 4 HOH A 84 331 331 HOH HOH . D 4 HOH A 85 332 332 HOH HOH . D 4 HOH A 86 333 333 HOH HOH . D 4 HOH A 87 334 334 HOH HOH . D 4 HOH A 88 335 335 HOH HOH . D 4 HOH A 89 336 336 HOH HOH . D 4 HOH A 90 337 337 HOH HOH . D 4 HOH A 91 338 338 HOH HOH . D 4 HOH A 92 339 339 HOH HOH . D 4 HOH A 93 340 340 HOH HOH . D 4 HOH A 94 341 341 HOH HOH . D 4 HOH A 95 342 342 HOH HOH . D 4 HOH A 96 343 343 HOH HOH . D 4 HOH A 97 344 344 HOH HOH . D 4 HOH A 98 345 345 HOH HOH . D 4 HOH A 99 346 346 HOH HOH . D 4 HOH A 100 347 347 HOH HOH . D 4 HOH A 101 348 348 HOH HOH . D 4 HOH A 102 349 349 HOH HOH . D 4 HOH A 103 350 350 HOH HOH . D 4 HOH A 104 351 351 HOH HOH . D 4 HOH A 105 352 352 HOH HOH . D 4 HOH A 106 353 353 HOH HOH . D 4 HOH A 107 354 354 HOH HOH . D 4 HOH A 108 355 355 HOH HOH . D 4 HOH A 109 356 356 HOH HOH . D 4 HOH A 110 357 357 HOH HOH . D 4 HOH A 111 358 358 HOH HOH . D 4 HOH A 112 359 359 HOH HOH . D 4 HOH A 113 360 360 HOH HOH . D 4 HOH A 114 361 361 HOH HOH . D 4 HOH A 115 362 362 HOH HOH . D 4 HOH A 116 363 363 HOH HOH . D 4 HOH A 117 364 364 HOH HOH . D 4 HOH A 118 365 365 HOH HOH . D 4 HOH A 119 366 366 HOH HOH . D 4 HOH A 120 367 367 HOH HOH . D 4 HOH A 121 368 368 HOH HOH . D 4 HOH A 122 369 369 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . C 3 7.391 50.221 55.493 1 9.77 ? C1 BEN 246 A 1 HETATM 2 C C2 BEN . . . C 3 8.062 50.126 56.67 1 9.88 ? C2 BEN 246 A 1 HETATM 3 C C3 BEN . . . C 3 7.865 48.901 57.393 1 9.4 ? C3 BEN 246 A 1 HETATM 4 C C4 BEN . . . C 3 7.854 47.692 56.647 1 8.99 ? C4 BEN 246 A 1 HETATM 5 C C5 BEN . . . C 3 7.306 47.774 55.342 1 8.98 ? C5 BEN 246 A 1 HETATM 6 C C6 BEN . . . C 3 7.239 49.034 54.718 1 9.99 ? C6 BEN 246 A 1 HETATM 7 C C BEN . . . C 3 7.262 51.452 54.833 1 9.56 ? C BEN 246 A 1 HETATM 8 N N1 BEN . . . C 3 7.219 52.509 55.639 1 9.52 ? N1 BEN 246 A 1 HETATM 9 N N2 BEN . . . C 3 7.895 51.59 53.692 1 9.82 ? N2 BEN 246 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #