data_2TRM
#
_model_server_result.job_id            2ktA6fjdT1SY4K3-dWAr_Q 
_model_server_result.datetime_utc      '2024-10-16 10:35:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2trm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":246}' 
#
_entry.id    2TRM 
#
_exptl.entry_id    2TRM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2TRM 
_cell.length_a            124.38 
_cell.length_b            124.38 
_cell.length_c            124.38 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2TRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc1 B CA CA . A CA 247 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc2 B CA CA . A CA 247 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc3 B CA CA . A CA 247 1_555 A OE1 GLU 59 A GLU 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? 
metalc ? metalc4 B CA CA . A CA 247 1_555 A OE2 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc5 B CA CA . A CA 247 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc6 B CA CA . A CA 247 1_555 A OE2 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.274 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2TRM 
_atom_sites.fract_transf_matrix[1][1]    0.00804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00804 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 247 247 CA CA . 
C 3 BEN A 1 246 246 BEN BEN . 
D 4 HOH A 1 248 248 HOH HOH . 
D 4 HOH A 2 249 249 HOH HOH . 
D 4 HOH A 3 250 250 HOH HOH . 
D 4 HOH A 4 251 251 HOH HOH . 
D 4 HOH A 5 252 252 HOH HOH . 
D 4 HOH A 6 253 253 HOH HOH . 
D 4 HOH A 7 254 254 HOH HOH . 
D 4 HOH A 8 255 255 HOH HOH . 
D 4 HOH A 9 256 256 HOH HOH . 
D 4 HOH A 10 257 257 HOH HOH . 
D 4 HOH A 11 258 258 HOH HOH . 
D 4 HOH A 12 259 259 HOH HOH . 
D 4 HOH A 13 260 260 HOH HOH . 
D 4 HOH A 14 261 261 HOH HOH . 
D 4 HOH A 15 262 262 HOH HOH . 
D 4 HOH A 16 263 263 HOH HOH . 
D 4 HOH A 17 264 264 HOH HOH . 
D 4 HOH A 18 265 265 HOH HOH . 
D 4 HOH A 19 266 266 HOH HOH . 
D 4 HOH A 20 267 267 HOH HOH . 
D 4 HOH A 21 268 268 HOH HOH . 
D 4 HOH A 22 269 269 HOH HOH . 
D 4 HOH A 23 270 270 HOH HOH . 
D 4 HOH A 24 271 271 HOH HOH . 
D 4 HOH A 25 272 272 HOH HOH . 
D 4 HOH A 26 273 273 HOH HOH . 
D 4 HOH A 27 274 274 HOH HOH . 
D 4 HOH A 28 275 275 HOH HOH . 
D 4 HOH A 29 276 276 HOH HOH . 
D 4 HOH A 30 277 277 HOH HOH . 
D 4 HOH A 31 278 278 HOH HOH . 
D 4 HOH A 32 279 279 HOH HOH . 
D 4 HOH A 33 280 280 HOH HOH . 
D 4 HOH A 34 281 281 HOH HOH . 
D 4 HOH A 35 282 282 HOH HOH . 
D 4 HOH A 36 283 283 HOH HOH . 
D 4 HOH A 37 284 284 HOH HOH . 
D 4 HOH A 38 285 285 HOH HOH . 
D 4 HOH A 39 286 286 HOH HOH . 
D 4 HOH A 40 287 287 HOH HOH . 
D 4 HOH A 41 288 288 HOH HOH . 
D 4 HOH A 42 289 289 HOH HOH . 
D 4 HOH A 43 290 290 HOH HOH . 
D 4 HOH A 44 291 291 HOH HOH . 
D 4 HOH A 45 292 292 HOH HOH . 
D 4 HOH A 46 293 293 HOH HOH . 
D 4 HOH A 47 294 294 HOH HOH . 
D 4 HOH A 48 295 295 HOH HOH . 
D 4 HOH A 49 296 296 HOH HOH . 
D 4 HOH A 50 297 297 HOH HOH . 
D 4 HOH A 51 298 298 HOH HOH . 
D 4 HOH A 52 299 299 HOH HOH . 
D 4 HOH A 53 300 300 HOH HOH . 
D 4 HOH A 54 301 301 HOH HOH . 
D 4 HOH A 55 302 302 HOH HOH . 
D 4 HOH A 56 303 303 HOH HOH . 
D 4 HOH A 57 304 304 HOH HOH . 
D 4 HOH A 58 305 305 HOH HOH . 
D 4 HOH A 59 306 306 HOH HOH . 
D 4 HOH A 60 307 307 HOH HOH . 
D 4 HOH A 61 308 308 HOH HOH . 
D 4 HOH A 62 309 309 HOH HOH . 
D 4 HOH A 63 310 310 HOH HOH . 
D 4 HOH A 64 311 311 HOH HOH . 
D 4 HOH A 65 312 312 HOH HOH . 
D 4 HOH A 66 313 313 HOH HOH . 
D 4 HOH A 67 314 314 HOH HOH . 
D 4 HOH A 68 315 315 HOH HOH . 
D 4 HOH A 69 316 316 HOH HOH . 
D 4 HOH A 70 317 317 HOH HOH . 
D 4 HOH A 71 318 318 HOH HOH . 
D 4 HOH A 72 319 319 HOH HOH . 
D 4 HOH A 73 320 320 HOH HOH . 
D 4 HOH A 74 321 321 HOH HOH . 
D 4 HOH A 75 322 322 HOH HOH . 
D 4 HOH A 76 323 323 HOH HOH . 
D 4 HOH A 77 324 324 HOH HOH . 
D 4 HOH A 78 325 325 HOH HOH . 
D 4 HOH A 79 326 326 HOH HOH . 
D 4 HOH A 80 327 327 HOH HOH . 
D 4 HOH A 81 328 328 HOH HOH . 
D 4 HOH A 82 329 329 HOH HOH . 
D 4 HOH A 83 330 330 HOH HOH . 
D 4 HOH A 84 331 331 HOH HOH . 
D 4 HOH A 85 332 332 HOH HOH . 
D 4 HOH A 86 333 333 HOH HOH . 
D 4 HOH A 87 334 334 HOH HOH . 
D 4 HOH A 88 335 335 HOH HOH . 
D 4 HOH A 89 336 336 HOH HOH . 
D 4 HOH A 90 337 337 HOH HOH . 
D 4 HOH A 91 338 338 HOH HOH . 
D 4 HOH A 92 339 339 HOH HOH . 
D 4 HOH A 93 340 340 HOH HOH . 
D 4 HOH A 94 341 341 HOH HOH . 
D 4 HOH A 95 342 342 HOH HOH . 
D 4 HOH A 96 343 343 HOH HOH . 
D 4 HOH A 97 344 344 HOH HOH . 
D 4 HOH A 98 345 345 HOH HOH . 
D 4 HOH A 99 346 346 HOH HOH . 
D 4 HOH A 100 347 347 HOH HOH . 
D 4 HOH A 101 348 348 HOH HOH . 
D 4 HOH A 102 349 349 HOH HOH . 
D 4 HOH A 103 350 350 HOH HOH . 
D 4 HOH A 104 351 351 HOH HOH . 
D 4 HOH A 105 352 352 HOH HOH . 
D 4 HOH A 106 353 353 HOH HOH . 
D 4 HOH A 107 354 354 HOH HOH . 
D 4 HOH A 108 355 355 HOH HOH . 
D 4 HOH A 109 356 356 HOH HOH . 
D 4 HOH A 110 357 357 HOH HOH . 
D 4 HOH A 111 358 358 HOH HOH . 
D 4 HOH A 112 359 359 HOH HOH . 
D 4 HOH A 113 360 360 HOH HOH . 
D 4 HOH A 114 361 361 HOH HOH . 
D 4 HOH A 115 362 362 HOH HOH . 
D 4 HOH A 116 363 363 HOH HOH . 
D 4 HOH A 117 364 364 HOH HOH . 
D 4 HOH A 118 365 365 HOH HOH . 
D 4 HOH A 119 366 366 HOH HOH . 
D 4 HOH A 120 367 367 HOH HOH . 
D 4 HOH A 121 368 368 HOH HOH . 
D 4 HOH A 122 369 369 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . C 3 7.391 50.221 55.493 1 9.77 ? C1 BEN 246 A 1 
HETATM 2 C C2 BEN . . . C 3 8.062 50.126 56.67 1 9.88 ? C2 BEN 246 A 1 
HETATM 3 C C3 BEN . . . C 3 7.865 48.901 57.393 1 9.4 ? C3 BEN 246 A 1 
HETATM 4 C C4 BEN . . . C 3 7.854 47.692 56.647 1 8.99 ? C4 BEN 246 A 1 
HETATM 5 C C5 BEN . . . C 3 7.306 47.774 55.342 1 8.98 ? C5 BEN 246 A 1 
HETATM 6 C C6 BEN . . . C 3 7.239 49.034 54.718 1 9.99 ? C6 BEN 246 A 1 
HETATM 7 C C BEN . . . C 3 7.262 51.452 54.833 1 9.56 ? C BEN 246 A 1 
HETATM 8 N N1 BEN . . . C 3 7.219 52.509 55.639 1 9.52 ? N1 BEN 246 A 1 
HETATM 9 N N2 BEN . . . C 3 7.895 51.59 53.692 1 9.82 ? N2 BEN 246 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#