data_2TRS # _model_server_result.job_id Yts_b45iQCWTm-pt8NNKAQ _model_server_result.datetime_utc '2024-11-08 13:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2trs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 2TRS # _exptl.entry_id 2TRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.5 _cell.angle_gamma 90 _cell.entry_id 2TRS _cell.length_a 184.2 _cell.length_b 61.3 _cell.length_c 67.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 184.2 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O GLY 232 B GLY 232 1_555 D NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 B O PHE 306 B PHE 306 1_555 D NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc3 B O SER 308 B SER 308 1_555 D NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc4 D NA NA . B NA 400 1_555 G O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc5 D NA NA . B NA 400 1_555 G O HOH . B HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2TRS _atom_sites.fract_transf_matrix[1][1] 0.005429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000427 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IPL A 1 273 273 IPL IPL . D 4 NA B 1 400 400 NA NA . E 5 PLS B 1 398 398 PLS PLS . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 404 HOH HOH . F 6 HOH A 5 405 405 HOH HOH . F 6 HOH A 6 406 406 HOH HOH . F 6 HOH A 7 407 407 HOH HOH . F 6 HOH A 8 466 466 HOH HOH . F 6 HOH A 9 467 467 HOH HOH . F 6 HOH A 10 468 468 HOH HOH . F 6 HOH A 11 469 469 HOH HOH . F 6 HOH A 12 470 470 HOH HOH . F 6 HOH A 13 471 471 HOH HOH . F 6 HOH A 14 473 473 HOH HOH . F 6 HOH A 15 474 474 HOH HOH . F 6 HOH A 16 475 475 HOH HOH . F 6 HOH A 17 476 476 HOH HOH . F 6 HOH A 18 477 477 HOH HOH . F 6 HOH A 19 478 478 HOH HOH . F 6 HOH A 20 481 481 HOH HOH . F 6 HOH A 21 484 484 HOH HOH . F 6 HOH A 22 485 485 HOH HOH . F 6 HOH A 23 487 487 HOH HOH . F 6 HOH A 24 488 488 HOH HOH . F 6 HOH A 25 489 489 HOH HOH . F 6 HOH A 26 490 490 HOH HOH . F 6 HOH A 27 491 491 HOH HOH . F 6 HOH A 28 498 498 HOH HOH . F 6 HOH A 29 507 507 HOH HOH . F 6 HOH A 30 508 508 HOH HOH . F 6 HOH A 31 509 509 HOH HOH . F 6 HOH A 32 511 511 HOH HOH . F 6 HOH A 33 546 546 HOH HOH . F 6 HOH A 34 547 547 HOH HOH . F 6 HOH A 35 548 548 HOH HOH . F 6 HOH A 36 550 550 HOH HOH . F 6 HOH A 37 551 551 HOH HOH . F 6 HOH A 38 552 552 HOH HOH . F 6 HOH A 39 553 553 HOH HOH . F 6 HOH A 40 554 554 HOH HOH . F 6 HOH A 41 572 572 HOH HOH . F 6 HOH A 42 573 573 HOH HOH . F 6 HOH A 43 574 574 HOH HOH . F 6 HOH A 44 577 577 HOH HOH . F 6 HOH A 45 578 578 HOH HOH . F 6 HOH A 46 579 579 HOH HOH . F 6 HOH A 47 580 580 HOH HOH . F 6 HOH A 48 588 588 HOH HOH . F 6 HOH A 49 589 589 HOH HOH . G 6 HOH B 1 408 408 HOH HOH . G 6 HOH B 2 409 409 HOH HOH . G 6 HOH B 3 410 410 HOH HOH . G 6 HOH B 4 411 411 HOH HOH . G 6 HOH B 5 412 412 HOH HOH . G 6 HOH B 6 413 413 HOH HOH . G 6 HOH B 7 414 414 HOH HOH . G 6 HOH B 8 415 415 HOH HOH . G 6 HOH B 9 416 416 HOH HOH . G 6 HOH B 10 417 417 HOH HOH . G 6 HOH B 11 418 418 HOH HOH . G 6 HOH B 12 419 419 HOH HOH . G 6 HOH B 13 420 420 HOH HOH . G 6 HOH B 14 421 421 HOH HOH . G 6 HOH B 15 422 422 HOH HOH . G 6 HOH B 16 423 423 HOH HOH . G 6 HOH B 17 424 424 HOH HOH . G 6 HOH B 18 425 425 HOH HOH . G 6 HOH B 19 426 426 HOH HOH . G 6 HOH B 20 427 427 HOH HOH . G 6 HOH B 21 428 428 HOH HOH . G 6 HOH B 22 429 429 HOH HOH . G 6 HOH B 23 430 430 HOH HOH . G 6 HOH B 24 431 431 HOH HOH . G 6 HOH B 25 432 432 HOH HOH . G 6 HOH B 26 433 433 HOH HOH . G 6 HOH B 27 434 434 HOH HOH . G 6 HOH B 28 435 435 HOH HOH . G 6 HOH B 29 436 436 HOH HOH . G 6 HOH B 30 437 437 HOH HOH . G 6 HOH B 31 438 438 HOH HOH . G 6 HOH B 32 439 439 HOH HOH . G 6 HOH B 33 440 440 HOH HOH . G 6 HOH B 34 441 441 HOH HOH . G 6 HOH B 35 442 442 HOH HOH . G 6 HOH B 36 443 443 HOH HOH . G 6 HOH B 37 444 444 HOH HOH . G 6 HOH B 38 445 445 HOH HOH . G 6 HOH B 39 446 446 HOH HOH . G 6 HOH B 40 447 447 HOH HOH . G 6 HOH B 41 448 448 HOH HOH . G 6 HOH B 42 449 449 HOH HOH . G 6 HOH B 43 450 450 HOH HOH . G 6 HOH B 44 451 451 HOH HOH . G 6 HOH B 45 452 452 HOH HOH . G 6 HOH B 46 453 453 HOH HOH . G 6 HOH B 47 454 454 HOH HOH . G 6 HOH B 48 455 455 HOH HOH . G 6 HOH B 49 456 456 HOH HOH . G 6 HOH B 50 457 457 HOH HOH . G 6 HOH B 51 458 458 HOH HOH . G 6 HOH B 52 459 459 HOH HOH . G 6 HOH B 53 460 460 HOH HOH . G 6 HOH B 54 461 461 HOH HOH . G 6 HOH B 55 462 462 HOH HOH . G 6 HOH B 56 463 463 HOH HOH . G 6 HOH B 57 464 464 HOH HOH . G 6 HOH B 58 465 465 HOH HOH . G 6 HOH B 59 472 472 HOH HOH . G 6 HOH B 60 479 479 HOH HOH . G 6 HOH B 61 480 480 HOH HOH . G 6 HOH B 62 482 482 HOH HOH . G 6 HOH B 63 483 483 HOH HOH . G 6 HOH B 64 486 486 HOH HOH . G 6 HOH B 65 492 492 HOH HOH . G 6 HOH B 66 493 493 HOH HOH . G 6 HOH B 67 494 494 HOH HOH . G 6 HOH B 68 495 495 HOH HOH . G 6 HOH B 69 496 496 HOH HOH . G 6 HOH B 70 497 497 HOH HOH . G 6 HOH B 71 499 499 HOH HOH . G 6 HOH B 72 500 500 HOH HOH . G 6 HOH B 73 501 501 HOH HOH . G 6 HOH B 74 502 502 HOH HOH . G 6 HOH B 75 503 503 HOH HOH . G 6 HOH B 76 504 504 HOH HOH . G 6 HOH B 77 505 505 HOH HOH . G 6 HOH B 78 506 506 HOH HOH . G 6 HOH B 79 510 510 HOH HOH . G 6 HOH B 80 512 512 HOH HOH . G 6 HOH B 81 513 513 HOH HOH . G 6 HOH B 82 514 514 HOH HOH . G 6 HOH B 83 515 515 HOH HOH . G 6 HOH B 84 516 516 HOH HOH . G 6 HOH B 85 517 517 HOH HOH . G 6 HOH B 86 518 518 HOH HOH . G 6 HOH B 87 519 519 HOH HOH . G 6 HOH B 88 520 520 HOH HOH . G 6 HOH B 89 521 521 HOH HOH . G 6 HOH B 90 522 522 HOH HOH . G 6 HOH B 91 523 523 HOH HOH . G 6 HOH B 92 524 524 HOH HOH . G 6 HOH B 93 525 525 HOH HOH . G 6 HOH B 94 526 526 HOH HOH . G 6 HOH B 95 527 527 HOH HOH . G 6 HOH B 96 528 528 HOH HOH . G 6 HOH B 97 529 529 HOH HOH . G 6 HOH B 98 530 530 HOH HOH . G 6 HOH B 99 531 531 HOH HOH . G 6 HOH B 100 532 532 HOH HOH . G 6 HOH B 101 533 533 HOH HOH . G 6 HOH B 102 534 534 HOH HOH . G 6 HOH B 103 535 535 HOH HOH . G 6 HOH B 104 536 536 HOH HOH . G 6 HOH B 105 537 537 HOH HOH . G 6 HOH B 106 538 538 HOH HOH . G 6 HOH B 107 539 539 HOH HOH . G 6 HOH B 108 540 540 HOH HOH . G 6 HOH B 109 541 541 HOH HOH . G 6 HOH B 110 542 542 HOH HOH . G 6 HOH B 111 543 543 HOH HOH . G 6 HOH B 112 544 544 HOH HOH . G 6 HOH B 113 545 545 HOH HOH . G 6 HOH B 114 549 549 HOH HOH . G 6 HOH B 115 555 555 HOH HOH . G 6 HOH B 116 556 556 HOH HOH . G 6 HOH B 117 557 557 HOH HOH . G 6 HOH B 118 558 558 HOH HOH . G 6 HOH B 119 559 559 HOH HOH . G 6 HOH B 120 560 560 HOH HOH . G 6 HOH B 121 561 561 HOH HOH . G 6 HOH B 122 562 562 HOH HOH . G 6 HOH B 123 563 563 HOH HOH . G 6 HOH B 124 564 564 HOH HOH . G 6 HOH B 125 565 565 HOH HOH . G 6 HOH B 126 566 566 HOH HOH . G 6 HOH B 127 567 567 HOH HOH . G 6 HOH B 128 568 568 HOH HOH . G 6 HOH B 129 569 569 HOH HOH . G 6 HOH B 130 570 570 HOH HOH . G 6 HOH B 131 571 571 HOH HOH . G 6 HOH B 132 575 575 HOH HOH . G 6 HOH B 133 576 576 HOH HOH . G 6 HOH B 134 581 581 HOH HOH . G 6 HOH B 135 582 582 HOH HOH . G 6 HOH B 136 583 583 HOH HOH . G 6 HOH B 137 584 584 HOH HOH . G 6 HOH B 138 585 585 HOH HOH . G 6 HOH B 139 586 586 HOH HOH . G 6 HOH B 140 587 587 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 77.814 _atom_site.Cartn_y 16.325 _atom_site.Cartn_z 20.328 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 400 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #