data_2TRX # _model_server_result.job_id MorZSxI0jX-tskjpitLv0w _model_server_result.datetime_utc '2024-11-01 20:33:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2trx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":602}' # _entry.id 2TRX # _exptl.entry_id 2TRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.5 _cell.angle_gamma 90 _cell.entry_id 2TRX _cell.length_a 89.5 _cell.length_b 51.06 _cell.length_c 60.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 PQS dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 A,C,D,E,F,G,L 3 1,2 B,H,I,J,K,M 4 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 89.5 0 0 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 65.395619 0 55.436281 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 B SG CYS 32 B CYS 32 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc1 C CU CU . A CU 109 1_555 A N SER 1 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 C CU CU . A CU 109 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 C CU CU . A CU 109 1_555 A OD1 ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 C CU CU . A CU 109 1_555 L O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc5 H CU CU . B CU 109 1_555 B N ASP 2 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc6 H CU CU . B CU 109 1_555 M O HOH . B HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc7 H CU CU . B CU 109 1_555 B OD1 ASP 2 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc8 H CU CU . B CU 109 1_555 B N SER 1 B SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc9 C CU CU . A CU 109 1_555 A OD1 ASP 10 A ASP 10 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc10 C CU CU . A CU 109 1_555 A OD2 ASP 10 A ASP 10 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc11 H CU CU . B CU 109 1_555 B OD1 ASP 10 B ASP 10 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc12 H CU CU . B CU 109 1_555 B OD2 ASP 10 B ASP 10 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2TRX _atom_sites.fract_transf_matrix[1][1] 0.011173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 109 109 CU CU . D 3 MPD A 1 601 601 MPD MPD . E 3 MPD A 1 605 605 MPD MPD . F 3 MPD A 1 606 606 MPD MPD . G 3 MPD A 1 607 607 MPD MPD . H 2 CU B 1 109 109 CU CU . I 3 MPD B 1 602 602 MPD MPD . J 3 MPD B 1 603 603 MPD MPD . K 3 MPD B 1 604 604 MPD MPD . L 4 HOH A 1 402 402 HOH HOH . L 4 HOH A 2 403 403 HOH HOH . L 4 HOH A 3 404 404 HOH HOH . L 4 HOH A 4 405 405 HOH HOH . L 4 HOH A 5 406 406 HOH HOH . L 4 HOH A 6 408 408 HOH HOH . L 4 HOH A 7 410 410 HOH HOH . L 4 HOH A 8 412 412 HOH HOH . L 4 HOH A 9 413 413 HOH HOH . L 4 HOH A 10 414 414 HOH HOH . L 4 HOH A 11 419 419 HOH HOH . L 4 HOH A 12 420 420 HOH HOH . L 4 HOH A 13 421 421 HOH HOH . L 4 HOH A 14 422 422 HOH HOH . L 4 HOH A 15 425 425 HOH HOH . L 4 HOH A 16 428 428 HOH HOH . L 4 HOH A 17 429 429 HOH HOH . L 4 HOH A 18 431 431 HOH HOH . L 4 HOH A 19 435 435 HOH HOH . L 4 HOH A 20 436 436 HOH HOH . L 4 HOH A 21 437 437 HOH HOH . L 4 HOH A 22 438 438 HOH HOH . L 4 HOH A 23 439 439 HOH HOH . L 4 HOH A 24 442 442 HOH HOH . L 4 HOH A 25 443 443 HOH HOH . L 4 HOH A 26 444 444 HOH HOH . L 4 HOH A 27 446 446 HOH HOH . L 4 HOH A 28 447 447 HOH HOH . L 4 HOH A 29 448 448 HOH HOH . L 4 HOH A 30 449 449 HOH HOH . L 4 HOH A 31 450 450 HOH HOH . L 4 HOH A 32 451 451 HOH HOH . L 4 HOH A 33 452 452 HOH HOH . L 4 HOH A 34 455 455 HOH HOH . L 4 HOH A 35 456 456 HOH HOH . L 4 HOH A 36 457 457 HOH HOH . L 4 HOH A 37 462 462 HOH HOH . L 4 HOH A 38 463 463 HOH HOH . L 4 HOH A 39 468 468 HOH HOH . L 4 HOH A 40 470 470 HOH HOH . L 4 HOH A 41 471 471 HOH HOH . L 4 HOH A 42 472 472 HOH HOH . L 4 HOH A 43 473 473 HOH HOH . L 4 HOH A 44 474 474 HOH HOH . L 4 HOH A 45 476 476 HOH HOH . L 4 HOH A 46 477 477 HOH HOH . L 4 HOH A 47 485 485 HOH HOH . L 4 HOH A 48 486 486 HOH HOH . L 4 HOH A 49 487 487 HOH HOH . L 4 HOH A 50 489 489 HOH HOH . L 4 HOH A 51 490 490 HOH HOH . L 4 HOH A 52 493 493 HOH HOH . L 4 HOH A 53 494 494 HOH HOH . L 4 HOH A 54 496 496 HOH HOH . L 4 HOH A 55 499 499 HOH HOH . L 4 HOH A 56 507 507 HOH HOH . L 4 HOH A 57 508 508 HOH HOH . L 4 HOH A 58 511 511 HOH HOH . L 4 HOH A 59 512 512 HOH HOH . L 4 HOH A 60 514 514 HOH HOH . L 4 HOH A 61 515 515 HOH HOH . L 4 HOH A 62 516 516 HOH HOH . L 4 HOH A 63 517 517 HOH HOH . L 4 HOH A 64 518 518 HOH HOH . L 4 HOH A 65 519 519 HOH HOH . L 4 HOH A 66 520 520 HOH HOH . L 4 HOH A 67 521 521 HOH HOH . L 4 HOH A 68 524 524 HOH HOH . L 4 HOH A 69 525 525 HOH HOH . L 4 HOH A 70 527 527 HOH HOH . L 4 HOH A 71 530 530 HOH HOH . L 4 HOH A 72 534 534 HOH HOH . L 4 HOH A 73 536 536 HOH HOH . L 4 HOH A 74 539 539 HOH HOH . L 4 HOH A 75 540 540 HOH HOH . M 4 HOH B 1 401 401 HOH HOH . M 4 HOH B 2 407 407 HOH HOH . M 4 HOH B 3 409 409 HOH HOH . M 4 HOH B 4 411 411 HOH HOH . M 4 HOH B 5 415 415 HOH HOH . M 4 HOH B 6 416 416 HOH HOH . M 4 HOH B 7 417 417 HOH HOH . M 4 HOH B 8 418 418 HOH HOH . M 4 HOH B 9 423 423 HOH HOH . M 4 HOH B 10 424 424 HOH HOH . M 4 HOH B 11 426 426 HOH HOH . M 4 HOH B 12 427 427 HOH HOH . M 4 HOH B 13 430 430 HOH HOH . M 4 HOH B 14 432 432 HOH HOH . M 4 HOH B 15 433 433 HOH HOH . M 4 HOH B 16 434 434 HOH HOH . M 4 HOH B 17 440 440 HOH HOH . M 4 HOH B 18 441 441 HOH HOH . M 4 HOH B 19 445 445 HOH HOH . M 4 HOH B 20 453 453 HOH HOH . M 4 HOH B 21 454 454 HOH HOH . M 4 HOH B 22 458 458 HOH HOH . M 4 HOH B 23 459 459 HOH HOH . M 4 HOH B 24 460 460 HOH HOH . M 4 HOH B 25 461 461 HOH HOH . M 4 HOH B 26 464 464 HOH HOH . M 4 HOH B 27 465 465 HOH HOH . M 4 HOH B 28 466 466 HOH HOH . M 4 HOH B 29 467 467 HOH HOH . M 4 HOH B 30 469 469 HOH HOH . M 4 HOH B 31 475 475 HOH HOH . M 4 HOH B 32 478 478 HOH HOH . M 4 HOH B 33 479 479 HOH HOH . M 4 HOH B 34 480 480 HOH HOH . M 4 HOH B 35 481 481 HOH HOH . M 4 HOH B 36 482 482 HOH HOH . M 4 HOH B 37 483 483 HOH HOH . M 4 HOH B 38 484 484 HOH HOH . M 4 HOH B 39 488 488 HOH HOH . M 4 HOH B 40 491 491 HOH HOH . M 4 HOH B 41 492 492 HOH HOH . M 4 HOH B 42 495 495 HOH HOH . M 4 HOH B 43 497 497 HOH HOH . M 4 HOH B 44 498 498 HOH HOH . M 4 HOH B 45 500 500 HOH HOH . M 4 HOH B 46 501 501 HOH HOH . M 4 HOH B 47 502 502 HOH HOH . M 4 HOH B 48 503 503 HOH HOH . M 4 HOH B 49 504 504 HOH HOH . M 4 HOH B 50 505 505 HOH HOH . M 4 HOH B 51 506 506 HOH HOH . M 4 HOH B 52 509 509 HOH HOH . M 4 HOH B 53 510 510 HOH HOH . M 4 HOH B 54 513 513 HOH HOH . M 4 HOH B 55 522 522 HOH HOH . M 4 HOH B 56 523 523 HOH HOH . M 4 HOH B 57 526 526 HOH HOH . M 4 HOH B 58 528 528 HOH HOH . M 4 HOH B 59 529 529 HOH HOH . M 4 HOH B 60 531 531 HOH HOH . M 4 HOH B 61 532 532 HOH HOH . M 4 HOH B 62 533 533 HOH HOH . M 4 HOH B 63 535 535 HOH HOH . M 4 HOH B 64 537 537 HOH HOH . M 4 HOH B 65 538 538 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . I 3 17.306 39.938 7.332 0.65 42.44 ? C1 MPD 602 B 1 HETATM 2 C C2 MPD . . . I 3 16.65 38.717 7.986 0.65 50.51 ? C2 MPD 602 B 1 HETATM 3 O O2 MPD . . . I 3 15.836 39.197 9.11 0.65 48.14 ? O2 MPD 602 B 1 HETATM 4 C CM MPD . . . I 3 15.659 38.121 6.995 0.65 56 ? CM MPD 602 B 1 HETATM 5 C C3 MPD . . . I 3 17.7 37.796 8.526 0.65 39.68 ? C3 MPD 602 B 1 HETATM 6 C C4 MPD . . . I 3 18.104 36.594 7.718 0.65 45.04 ? C4 MPD 602 B 1 HETATM 7 O O4 MPD . . . I 3 19.533 36.606 7.51 0.65 44.28 ? O4 MPD 602 B 1 HETATM 8 C C5 MPD . . . I 3 17.679 35.298 8.388 0.65 43.42 ? C5 MPD 602 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #