data_2TRX
#
_model_server_result.job_id            -ebDMOqjkFEZknpiE4t23A 
_model_server_result.datetime_utc      '2024-11-28 04:10:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2trx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":606}' 
#
_entry.id    2TRX 
#
_exptl.entry_id    2TRX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.5 
_cell.angle_gamma         90 
_cell.entry_id            2TRX 
_cell.length_a            89.5 
_cell.length_b            51.06 
_cell.length_c            60.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2TRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA,PQS dimeric 2 software_defined_assembly 3 
PQS dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
A,C,D,E,F,G,L 3 1,2 
B,H,I,J,K,M 4 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 89.5 0 0 
3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 65.395619 0 55.436281 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
disulf ? disulf2 B SG CYS 32 B CYS 32 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc1 A N SER 1 A SER 1 1_555 C CU CU . A CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc2 A N ASP 2 A ASP 2 1_555 C CU CU . A CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc3 A OD1 ASP 2 A ASP 2 1_555 C CU CU . A CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc4 A OD1 ASP 10 A ASP 10 4_545 C CU CU . A CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc5 A OD2 ASP 10 A ASP 10 4_545 C CU CU . A CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc6 C CU CU . A CU 109 1_555 L O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc7 B N SER 1 B SER 1 1_555 H CU CU . B CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc8 B N ASP 2 B ASP 2 1_555 H CU CU . B CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc9 B OD1 ASP 2 B ASP 2 1_555 H CU CU . B CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc10 B OD1 ASP 10 B ASP 10 4_546 H CU CU . B CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc11 B OD2 ASP 10 B ASP 10 4_546 H CU CU . B CU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc12 H CU CU . B CU 109 1_555 M O HOH . B HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     2TRX 
_atom_sites.fract_transf_matrix[1][1]    0.011173 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004858 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CU A 1 109 109 CU CU . 
D 3 MPD A 1 601 601 MPD MPD . 
E 3 MPD A 1 605 605 MPD MPD . 
F 3 MPD A 1 606 606 MPD MPD . 
G 3 MPD A 1 607 607 MPD MPD . 
H 2 CU B 1 109 109 CU CU . 
I 3 MPD B 1 602 602 MPD MPD . 
J 3 MPD B 1 603 603 MPD MPD . 
K 3 MPD B 1 604 604 MPD MPD . 
L 4 HOH A 1 402 402 HOH HOH . 
L 4 HOH A 2 403 403 HOH HOH . 
L 4 HOH A 3 404 404 HOH HOH . 
L 4 HOH A 4 405 405 HOH HOH . 
L 4 HOH A 5 406 406 HOH HOH . 
L 4 HOH A 6 408 408 HOH HOH . 
L 4 HOH A 7 410 410 HOH HOH . 
L 4 HOH A 8 412 412 HOH HOH . 
L 4 HOH A 9 413 413 HOH HOH . 
L 4 HOH A 10 414 414 HOH HOH . 
L 4 HOH A 11 419 419 HOH HOH . 
L 4 HOH A 12 420 420 HOH HOH . 
L 4 HOH A 13 421 421 HOH HOH . 
L 4 HOH A 14 422 422 HOH HOH . 
L 4 HOH A 15 425 425 HOH HOH . 
L 4 HOH A 16 428 428 HOH HOH . 
L 4 HOH A 17 429 429 HOH HOH . 
L 4 HOH A 18 431 431 HOH HOH . 
L 4 HOH A 19 435 435 HOH HOH . 
L 4 HOH A 20 436 436 HOH HOH . 
L 4 HOH A 21 437 437 HOH HOH . 
L 4 HOH A 22 438 438 HOH HOH . 
L 4 HOH A 23 439 439 HOH HOH . 
L 4 HOH A 24 442 442 HOH HOH . 
L 4 HOH A 25 443 443 HOH HOH . 
L 4 HOH A 26 444 444 HOH HOH . 
L 4 HOH A 27 446 446 HOH HOH . 
L 4 HOH A 28 447 447 HOH HOH . 
L 4 HOH A 29 448 448 HOH HOH . 
L 4 HOH A 30 449 449 HOH HOH . 
L 4 HOH A 31 450 450 HOH HOH . 
L 4 HOH A 32 451 451 HOH HOH . 
L 4 HOH A 33 452 452 HOH HOH . 
L 4 HOH A 34 455 455 HOH HOH . 
L 4 HOH A 35 456 456 HOH HOH . 
L 4 HOH A 36 457 457 HOH HOH . 
L 4 HOH A 37 462 462 HOH HOH . 
L 4 HOH A 38 463 463 HOH HOH . 
L 4 HOH A 39 468 468 HOH HOH . 
L 4 HOH A 40 470 470 HOH HOH . 
L 4 HOH A 41 471 471 HOH HOH . 
L 4 HOH A 42 472 472 HOH HOH . 
L 4 HOH A 43 473 473 HOH HOH . 
L 4 HOH A 44 474 474 HOH HOH . 
L 4 HOH A 45 476 476 HOH HOH . 
L 4 HOH A 46 477 477 HOH HOH . 
L 4 HOH A 47 485 485 HOH HOH . 
L 4 HOH A 48 486 486 HOH HOH . 
L 4 HOH A 49 487 487 HOH HOH . 
L 4 HOH A 50 489 489 HOH HOH . 
L 4 HOH A 51 490 490 HOH HOH . 
L 4 HOH A 52 493 493 HOH HOH . 
L 4 HOH A 53 494 494 HOH HOH . 
L 4 HOH A 54 496 496 HOH HOH . 
L 4 HOH A 55 499 499 HOH HOH . 
L 4 HOH A 56 507 507 HOH HOH . 
L 4 HOH A 57 508 508 HOH HOH . 
L 4 HOH A 58 511 511 HOH HOH . 
L 4 HOH A 59 512 512 HOH HOH . 
L 4 HOH A 60 514 514 HOH HOH . 
L 4 HOH A 61 515 515 HOH HOH . 
L 4 HOH A 62 516 516 HOH HOH . 
L 4 HOH A 63 517 517 HOH HOH . 
L 4 HOH A 64 518 518 HOH HOH . 
L 4 HOH A 65 519 519 HOH HOH . 
L 4 HOH A 66 520 520 HOH HOH . 
L 4 HOH A 67 521 521 HOH HOH . 
L 4 HOH A 68 524 524 HOH HOH . 
L 4 HOH A 69 525 525 HOH HOH . 
L 4 HOH A 70 527 527 HOH HOH . 
L 4 HOH A 71 530 530 HOH HOH . 
L 4 HOH A 72 534 534 HOH HOH . 
L 4 HOH A 73 536 536 HOH HOH . 
L 4 HOH A 74 539 539 HOH HOH . 
L 4 HOH A 75 540 540 HOH HOH . 
M 4 HOH B 1 401 401 HOH HOH . 
M 4 HOH B 2 407 407 HOH HOH . 
M 4 HOH B 3 409 409 HOH HOH . 
M 4 HOH B 4 411 411 HOH HOH . 
M 4 HOH B 5 415 415 HOH HOH . 
M 4 HOH B 6 416 416 HOH HOH . 
M 4 HOH B 7 417 417 HOH HOH . 
M 4 HOH B 8 418 418 HOH HOH . 
M 4 HOH B 9 423 423 HOH HOH . 
M 4 HOH B 10 424 424 HOH HOH . 
M 4 HOH B 11 426 426 HOH HOH . 
M 4 HOH B 12 427 427 HOH HOH . 
M 4 HOH B 13 430 430 HOH HOH . 
M 4 HOH B 14 432 432 HOH HOH . 
M 4 HOH B 15 433 433 HOH HOH . 
M 4 HOH B 16 434 434 HOH HOH . 
M 4 HOH B 17 440 440 HOH HOH . 
M 4 HOH B 18 441 441 HOH HOH . 
M 4 HOH B 19 445 445 HOH HOH . 
M 4 HOH B 20 453 453 HOH HOH . 
M 4 HOH B 21 454 454 HOH HOH . 
M 4 HOH B 22 458 458 HOH HOH . 
M 4 HOH B 23 459 459 HOH HOH . 
M 4 HOH B 24 460 460 HOH HOH . 
M 4 HOH B 25 461 461 HOH HOH . 
M 4 HOH B 26 464 464 HOH HOH . 
M 4 HOH B 27 465 465 HOH HOH . 
M 4 HOH B 28 466 466 HOH HOH . 
M 4 HOH B 29 467 467 HOH HOH . 
M 4 HOH B 30 469 469 HOH HOH . 
M 4 HOH B 31 475 475 HOH HOH . 
M 4 HOH B 32 478 478 HOH HOH . 
M 4 HOH B 33 479 479 HOH HOH . 
M 4 HOH B 34 480 480 HOH HOH . 
M 4 HOH B 35 481 481 HOH HOH . 
M 4 HOH B 36 482 482 HOH HOH . 
M 4 HOH B 37 483 483 HOH HOH . 
M 4 HOH B 38 484 484 HOH HOH . 
M 4 HOH B 39 488 488 HOH HOH . 
M 4 HOH B 40 491 491 HOH HOH . 
M 4 HOH B 41 492 492 HOH HOH . 
M 4 HOH B 42 495 495 HOH HOH . 
M 4 HOH B 43 497 497 HOH HOH . 
M 4 HOH B 44 498 498 HOH HOH . 
M 4 HOH B 45 500 500 HOH HOH . 
M 4 HOH B 46 501 501 HOH HOH . 
M 4 HOH B 47 502 502 HOH HOH . 
M 4 HOH B 48 503 503 HOH HOH . 
M 4 HOH B 49 504 504 HOH HOH . 
M 4 HOH B 50 505 505 HOH HOH . 
M 4 HOH B 51 506 506 HOH HOH . 
M 4 HOH B 52 509 509 HOH HOH . 
M 4 HOH B 53 510 510 HOH HOH . 
M 4 HOH B 54 513 513 HOH HOH . 
M 4 HOH B 55 522 522 HOH HOH . 
M 4 HOH B 56 523 523 HOH HOH . 
M 4 HOH B 57 526 526 HOH HOH . 
M 4 HOH B 58 528 528 HOH HOH . 
M 4 HOH B 59 529 529 HOH HOH . 
M 4 HOH B 60 531 531 HOH HOH . 
M 4 HOH B 61 532 532 HOH HOH . 
M 4 HOH B 62 533 533 HOH HOH . 
M 4 HOH B 63 535 535 HOH HOH . 
M 4 HOH B 64 537 537 HOH HOH . 
M 4 HOH B 65 538 538 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . F 3 46.534 38.537 -1.632 0.75 43.14 ? C1 MPD 606 A 1 
HETATM 2 C C2 MPD . . . F 3 45.507 39.104 -2.604 0.75 54.26 ? C2 MPD 606 A 1 
HETATM 3 O O2 MPD . . . F 3 44.567 39.924 -1.859 0.75 61.78 ? O2 MPD 606 A 1 
HETATM 4 C CM MPD . . . F 3 46.248 39.979 -3.614 0.75 50.04 ? CM MPD 606 A 1 
HETATM 5 C C3 MPD . . . F 3 44.757 38.025 -3.364 0.75 39.98 ? C3 MPD 606 A 1 
HETATM 6 C C4 MPD . . . F 3 43.803 37.284 -2.448 0.75 51.13 ? C4 MPD 606 A 1 
HETATM 7 O O4 MPD . . . F 3 42.566 38.025 -2.315 0.75 49.2 ? O4 MPD 606 A 1 
HETATM 8 C C5 MPD . . . F 3 43.526 35.9 -2.974 0.75 38.6 ? C5 MPD 606 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#