data_2TSR # _model_server_result.job_id sS9jp1E8JnXIKN5i87mUUQ _model_server_result.datetime_utc '2024-12-07 17:53:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2tsr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 2TSR # _exptl.entry_id 2TSR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TOMUDEX _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.4 _cell.angle_gamma 90 _cell.entry_id 2TSR _cell.length_a 99.7 _cell.length_b 101.6 _cell.length_c 140.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C21 H22 N4 O6 S' _chem_comp.formula_weight 458.488 _chem_comp.id D16 _chem_comp.mon_nstd_flag . _chem_comp.name TOMUDEX _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ZD1694;Raltitrexed # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 D16 sing 83 n n N1 C8A D16 sing 84 n n N1 HN1 D16 sing 85 n n C2 CM2 D16 sing 86 n n C2 N3 D16 doub 87 n n CM2 HM21 D16 sing 88 n n CM2 HM22 D16 sing 89 n n CM2 HM23 D16 sing 90 n n N3 C4 D16 sing 91 n n C4 O4 D16 doub 92 n n C4 C4A D16 sing 93 n n C4A C5 D16 doub 94 n y C4A C8A D16 sing 95 n y C5 C6 D16 sing 96 n y C5 H5 D16 sing 97 n n C6 C7 D16 doub 98 n y C6 C9 D16 sing 99 n n C7 C8 D16 sing 100 n y C7 H7 D16 sing 101 n n C8 C8A D16 doub 102 n y C8 H8 D16 sing 103 n n C9 N10 D16 sing 104 n n C9 H91 D16 sing 105 n n C9 H92 D16 sing 106 n n N10 C14 D16 sing 107 n n N10 CP1 D16 sing 108 n n C11 S13 D16 sing 109 n y C11 C16 D16 doub 110 n y C11 C D16 sing 111 n n S13 C14 D16 sing 112 n y C14 C15 D16 doub 113 n y C15 C16 D16 sing 114 n y C15 H15 D16 sing 115 n n C16 H16 D16 sing 116 n n C O D16 doub 117 n n C N D16 sing 118 n n N CA D16 sing 119 n n N HN D16 sing 120 n n CA CB D16 sing 121 n n CA CT D16 sing 122 n n CA HA D16 sing 123 n n CB CG D16 sing 124 n n CB HB1 D16 sing 125 n n CB HB2 D16 sing 126 n n CG CD D16 sing 127 n n CG HG1 D16 sing 128 n n CG HG2 D16 sing 129 n n CD OE1 D16 doub 130 n n CD OE2 D16 sing 131 n n OE2 HOE2 D16 sing 132 n n CT O1 D16 doub 133 n n CT O2 D16 sing 134 n n O2 HO2 D16 sing 135 n n CP1 HP11 D16 sing 136 n n CP1 HP12 D16 sing 137 n n CP1 HP13 D16 sing 138 n n # _atom_sites.entry_id 2TSR _atom_sites.fract_transf_matrix[1][1] 0.01003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002022 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UMP A 1 308 308 UMP UMP . F 3 D16 A 1 309 309 D16 D16 . G 2 UMP B 1 408 408 UMP UMP . H 3 D16 B 1 409 409 D16 D16 . I 2 UMP C 1 508 508 UMP UMP . J 3 D16 C 1 509 509 D16 D16 . K 2 UMP D 1 608 608 UMP UMP . L 3 D16 D 1 609 609 D16 D16 . M 4 HOH A 1 310 4 HOH HOH . M 4 HOH A 2 311 6 HOH HOH . M 4 HOH A 3 312 8 HOH HOH . M 4 HOH A 4 313 9 HOH HOH . M 4 HOH A 5 314 11 HOH HOH . M 4 HOH A 6 315 12 HOH HOH . M 4 HOH A 7 316 13 HOH HOH . M 4 HOH A 8 317 14 HOH HOH . M 4 HOH A 9 318 15 HOH HOH . M 4 HOH A 10 319 16 HOH HOH . M 4 HOH A 11 320 18 HOH HOH . M 4 HOH A 12 321 23 HOH HOH . M 4 HOH A 13 322 24 HOH HOH . M 4 HOH A 14 323 25 HOH HOH . M 4 HOH A 15 324 26 HOH HOH . M 4 HOH A 16 325 27 HOH HOH . M 4 HOH A 17 326 28 HOH HOH . M 4 HOH A 18 327 29 HOH HOH . M 4 HOH A 19 328 32 HOH HOH . M 4 HOH A 20 329 35 HOH HOH . M 4 HOH A 21 330 36 HOH HOH . M 4 HOH A 22 331 41 HOH HOH . M 4 HOH A 23 332 43 HOH HOH . M 4 HOH A 24 333 46 HOH HOH . N 4 HOH B 1 410 1 HOH HOH . N 4 HOH B 2 411 3 HOH HOH . N 4 HOH B 3 412 5 HOH HOH . N 4 HOH B 4 413 7 HOH HOH . N 4 HOH B 5 414 10 HOH HOH . N 4 HOH B 6 415 17 HOH HOH . N 4 HOH B 7 416 19 HOH HOH . N 4 HOH B 8 417 20 HOH HOH . N 4 HOH B 9 418 21 HOH HOH . N 4 HOH B 10 419 22 HOH HOH . N 4 HOH B 11 420 30 HOH HOH . N 4 HOH B 12 421 31 HOH HOH . N 4 HOH B 13 422 33 HOH HOH . N 4 HOH B 14 423 34 HOH HOH . N 4 HOH B 15 424 37 HOH HOH . N 4 HOH B 16 425 38 HOH HOH . N 4 HOH B 17 426 39 HOH HOH . N 4 HOH B 18 427 40 HOH HOH . N 4 HOH B 19 428 42 HOH HOH . N 4 HOH B 20 429 44 HOH HOH . N 4 HOH B 21 430 45 HOH HOH . N 4 HOH B 22 431 47 HOH HOH . N 4 HOH B 23 432 48 HOH HOH . N 4 HOH B 24 433 50 HOH HOH . N 4 HOH B 25 434 55 HOH HOH . N 4 HOH B 26 435 57 HOH HOH . O 4 HOH C 1 510 2 HOH HOH . O 4 HOH C 2 511 61 HOH HOH . O 4 HOH C 3 512 64 HOH HOH . O 4 HOH C 4 513 67 HOH HOH . O 4 HOH C 5 514 68 HOH HOH . O 4 HOH C 6 515 69 HOH HOH . O 4 HOH C 7 516 71 HOH HOH . O 4 HOH C 8 517 72 HOH HOH . O 4 HOH C 9 518 74 HOH HOH . P 4 HOH D 1 610 49 HOH HOH . P 4 HOH D 2 611 51 HOH HOH . P 4 HOH D 3 612 52 HOH HOH . P 4 HOH D 4 613 53 HOH HOH . P 4 HOH D 5 614 54 HOH HOH . P 4 HOH D 6 615 56 HOH HOH . P 4 HOH D 7 616 58 HOH HOH . P 4 HOH D 8 617 59 HOH HOH . P 4 HOH D 9 618 60 HOH HOH . P 4 HOH D 10 619 62 HOH HOH . P 4 HOH D 11 620 63 HOH HOH . P 4 HOH D 12 621 65 HOH HOH . P 4 HOH D 13 622 66 HOH HOH . P 4 HOH D 14 623 70 HOH HOH . P 4 HOH D 15 624 73 HOH HOH . P 4 HOH D 16 625 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D16 . . . J 3 24.746 -26.093 67.991 1 54.72 ? N1 D16 509 C 1 HETATM 2 C C2 D16 . . . J 3 25.143 -26.615 66.709 1 54.5 ? C2 D16 509 C 1 HETATM 3 C CM2 D16 . . . J 3 26.462 -26.241 66.094 1 57.48 ? CM2 D16 509 C 1 HETATM 4 N N3 D16 . . . J 3 24.263 -27.502 66.023 1 54.45 ? N3 D16 509 C 1 HETATM 5 C C4 D16 . . . J 3 23.002 -27.898 66.55 1 52.01 ? C4 D16 509 C 1 HETATM 6 O O4 D16 . . . J 3 22.263 -28.655 65.957 1 48.63 ? O4 D16 509 C 1 HETATM 7 C C4A D16 . . . J 3 22.63 -27.317 67.909 1 51.75 ? C4A D16 509 C 1 HETATM 8 C C5 D16 . . . J 3 21.411 -27.622 68.558 1 50.65 ? C5 D16 509 C 1 HETATM 9 C C6 D16 . . . J 3 21.037 -27.087 69.846 1 51.66 ? C6 D16 509 C 1 HETATM 10 C C7 D16 . . . J 3 21.98 -26.193 70.478 1 49.76 ? C7 D16 509 C 1 HETATM 11 C C8 D16 . . . J 3 23.225 -25.86 69.852 1 54.11 ? C8 D16 509 C 1 HETATM 12 C C8A D16 . . . J 3 23.524 -26.425 68.59 1 54.41 ? C8A D16 509 C 1 HETATM 13 C C9 D16 . . . J 3 19.658 -27.465 70.538 1 47.37 ? C9 D16 509 C 1 HETATM 14 N N10 D16 . . . J 3 18.968 -28.818 70.179 1 48.88 ? N10 D16 509 C 1 HETATM 15 C C11 D16 . . . J 3 21.092 -32.061 70.929 1 55.29 ? C11 D16 509 C 1 HETATM 16 S S13 D16 . . . J 3 21.137 -30.343 71.186 1 50.98 ? S13 D16 509 C 1 HETATM 17 C C14 D16 . . . J 3 19.641 -30.087 70.358 1 50.86 ? C14 D16 509 C 1 HETATM 18 C C15 D16 . . . J 3 19.185 -31.297 69.913 1 51.01 ? C15 D16 509 C 1 HETATM 19 C C16 D16 . . . J 3 19.982 -32.406 70.235 1 52.2 ? C16 D16 509 C 1 HETATM 20 C C D16 . . . J 3 22.249 -32.914 71.496 1 61.62 ? C D16 509 C 1 HETATM 21 O O D16 . . . J 3 23.102 -32.353 72.213 1 64.3 ? O D16 509 C 1 HETATM 22 N N D16 . . . J 3 22.201 -34.281 71.304 1 66.07 ? N D16 509 C 1 HETATM 23 C CA D16 . . . J 3 23.257 -35.11 71.919 1 68.95 ? CA D16 509 C 1 HETATM 24 C CB D16 . . . J 3 22.979 -35.472 73.44 1 70.49 ? CB D16 509 C 1 HETATM 25 C CG D16 . . . J 3 23.739 -34.783 74.66 1 76.52 ? CG D16 509 C 1 HETATM 26 C CD D16 . . . J 3 23.092 -35.128 76.064 1 82.94 ? CD D16 509 C 1 HETATM 27 O OE1 D16 . . . J 3 22.653 -34.162 76.719 1 86.46 ? OE1 D16 509 C 1 HETATM 28 O OE2 D16 . . . J 3 23.075 -36.336 76.38 1 83.78 ? OE2 D16 509 C 1 HETATM 29 C CT D16 . . . J 3 23.602 -36.3 70.935 1 70.26 ? CT D16 509 C 1 HETATM 30 O O1 D16 . . . J 3 22.679 -36.669 70.187 1 71.95 ? O1 D16 509 C 1 HETATM 31 O O2 D16 . . . J 3 24.755 -36.757 71.01 1 74.25 ? O2 D16 509 C 1 HETATM 32 C CP1 D16 . . . J 3 17.526 -28.764 69.874 1 48.76 ? CP1 D16 509 C 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #