data_2TSR
#
_model_server_result.job_id            AN5qKwSJO-RjwMjWpgZBeA 
_model_server_result.datetime_utc      '2024-10-11 02:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2tsr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":609}' 
#
_entry.id    2TSR 
#
_exptl.entry_id    2TSR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TOMUDEX 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.4 
_cell.angle_gamma         90 
_cell.entry_id            2TSR 
_cell.length_a            99.7 
_cell.length_b            101.6 
_cell.length_c            140.8 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2TSR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C21 H22 N4 O6 S' 
_chem_comp.formula_weight    458.488 
_chem_comp.id                D16 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TOMUDEX 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ZD1694;Raltitrexed 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 D16 sing 83 n n 
N1 C8A D16 sing 84 n n 
N1 HN1 D16 sing 85 n n 
C2 CM2 D16 sing 86 n n 
C2 N3 D16 doub 87 n n 
CM2 HM21 D16 sing 88 n n 
CM2 HM22 D16 sing 89 n n 
CM2 HM23 D16 sing 90 n n 
N3 C4 D16 sing 91 n n 
C4 O4 D16 doub 92 n n 
C4 C4A D16 sing 93 n n 
C4A C5 D16 doub 94 n y 
C4A C8A D16 sing 95 n y 
C5 C6 D16 sing 96 n y 
C5 H5 D16 sing 97 n n 
C6 C7 D16 doub 98 n y 
C6 C9 D16 sing 99 n n 
C7 C8 D16 sing 100 n y 
C7 H7 D16 sing 101 n n 
C8 C8A D16 doub 102 n y 
C8 H8 D16 sing 103 n n 
C9 N10 D16 sing 104 n n 
C9 H91 D16 sing 105 n n 
C9 H92 D16 sing 106 n n 
N10 C14 D16 sing 107 n n 
N10 CP1 D16 sing 108 n n 
C11 S13 D16 sing 109 n y 
C11 C16 D16 doub 110 n y 
C11 C D16 sing 111 n n 
S13 C14 D16 sing 112 n y 
C14 C15 D16 doub 113 n y 
C15 C16 D16 sing 114 n y 
C15 H15 D16 sing 115 n n 
C16 H16 D16 sing 116 n n 
C O D16 doub 117 n n 
C N D16 sing 118 n n 
N CA D16 sing 119 n n 
N HN D16 sing 120 n n 
CA CB D16 sing 121 n n 
CA CT D16 sing 122 n n 
CA HA D16 sing 123 n n 
CB CG D16 sing 124 n n 
CB HB1 D16 sing 125 n n 
CB HB2 D16 sing 126 n n 
CG CD D16 sing 127 n n 
CG HG1 D16 sing 128 n n 
CG HG2 D16 sing 129 n n 
CD OE1 D16 doub 130 n n 
CD OE2 D16 sing 131 n n 
OE2 HOE2 D16 sing 132 n n 
CT O1 D16 doub 133 n n 
CT O2 D16 sing 134 n n 
O2 HO2 D16 sing 135 n n 
CP1 HP11 D16 sing 136 n n 
CP1 HP12 D16 sing 137 n n 
CP1 HP13 D16 sing 138 n n 
#
_atom_sites.entry_id                     2TSR 
_atom_sites.fract_transf_matrix[1][1]    0.01003 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002022 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007245 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UMP A 1 308 308 UMP UMP . 
F 3 D16 A 1 309 309 D16 D16 . 
G 2 UMP B 1 408 408 UMP UMP . 
H 3 D16 B 1 409 409 D16 D16 . 
I 2 UMP C 1 508 508 UMP UMP . 
J 3 D16 C 1 509 509 D16 D16 . 
K 2 UMP D 1 608 608 UMP UMP . 
L 3 D16 D 1 609 609 D16 D16 . 
M 4 HOH A 1 310 4 HOH HOH . 
M 4 HOH A 2 311 6 HOH HOH . 
M 4 HOH A 3 312 8 HOH HOH . 
M 4 HOH A 4 313 9 HOH HOH . 
M 4 HOH A 5 314 11 HOH HOH . 
M 4 HOH A 6 315 12 HOH HOH . 
M 4 HOH A 7 316 13 HOH HOH . 
M 4 HOH A 8 317 14 HOH HOH . 
M 4 HOH A 9 318 15 HOH HOH . 
M 4 HOH A 10 319 16 HOH HOH . 
M 4 HOH A 11 320 18 HOH HOH . 
M 4 HOH A 12 321 23 HOH HOH . 
M 4 HOH A 13 322 24 HOH HOH . 
M 4 HOH A 14 323 25 HOH HOH . 
M 4 HOH A 15 324 26 HOH HOH . 
M 4 HOH A 16 325 27 HOH HOH . 
M 4 HOH A 17 326 28 HOH HOH . 
M 4 HOH A 18 327 29 HOH HOH . 
M 4 HOH A 19 328 32 HOH HOH . 
M 4 HOH A 20 329 35 HOH HOH . 
M 4 HOH A 21 330 36 HOH HOH . 
M 4 HOH A 22 331 41 HOH HOH . 
M 4 HOH A 23 332 43 HOH HOH . 
M 4 HOH A 24 333 46 HOH HOH . 
N 4 HOH B 1 410 1 HOH HOH . 
N 4 HOH B 2 411 3 HOH HOH . 
N 4 HOH B 3 412 5 HOH HOH . 
N 4 HOH B 4 413 7 HOH HOH . 
N 4 HOH B 5 414 10 HOH HOH . 
N 4 HOH B 6 415 17 HOH HOH . 
N 4 HOH B 7 416 19 HOH HOH . 
N 4 HOH B 8 417 20 HOH HOH . 
N 4 HOH B 9 418 21 HOH HOH . 
N 4 HOH B 10 419 22 HOH HOH . 
N 4 HOH B 11 420 30 HOH HOH . 
N 4 HOH B 12 421 31 HOH HOH . 
N 4 HOH B 13 422 33 HOH HOH . 
N 4 HOH B 14 423 34 HOH HOH . 
N 4 HOH B 15 424 37 HOH HOH . 
N 4 HOH B 16 425 38 HOH HOH . 
N 4 HOH B 17 426 39 HOH HOH . 
N 4 HOH B 18 427 40 HOH HOH . 
N 4 HOH B 19 428 42 HOH HOH . 
N 4 HOH B 20 429 44 HOH HOH . 
N 4 HOH B 21 430 45 HOH HOH . 
N 4 HOH B 22 431 47 HOH HOH . 
N 4 HOH B 23 432 48 HOH HOH . 
N 4 HOH B 24 433 50 HOH HOH . 
N 4 HOH B 25 434 55 HOH HOH . 
N 4 HOH B 26 435 57 HOH HOH . 
O 4 HOH C 1 510 2 HOH HOH . 
O 4 HOH C 2 511 61 HOH HOH . 
O 4 HOH C 3 512 64 HOH HOH . 
O 4 HOH C 4 513 67 HOH HOH . 
O 4 HOH C 5 514 68 HOH HOH . 
O 4 HOH C 6 515 69 HOH HOH . 
O 4 HOH C 7 516 71 HOH HOH . 
O 4 HOH C 8 517 72 HOH HOH . 
O 4 HOH C 9 518 74 HOH HOH . 
P 4 HOH D 1 610 49 HOH HOH . 
P 4 HOH D 2 611 51 HOH HOH . 
P 4 HOH D 3 612 52 HOH HOH . 
P 4 HOH D 4 613 53 HOH HOH . 
P 4 HOH D 5 614 54 HOH HOH . 
P 4 HOH D 6 615 56 HOH HOH . 
P 4 HOH D 7 616 58 HOH HOH . 
P 4 HOH D 8 617 59 HOH HOH . 
P 4 HOH D 9 618 60 HOH HOH . 
P 4 HOH D 10 619 62 HOH HOH . 
P 4 HOH D 11 620 63 HOH HOH . 
P 4 HOH D 12 621 65 HOH HOH . 
P 4 HOH D 13 622 66 HOH HOH . 
P 4 HOH D 14 623 70 HOH HOH . 
P 4 HOH D 15 624 73 HOH HOH . 
P 4 HOH D 16 625 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 D16 . . . L 3 -9.943 -15.311 45.681 1 56.33 ? N1 D16 609 D 1 
HETATM 2 C C2 D16 . . . L 3 -9.708 -16.613 45.127 1 59.53 ? C2 D16 609 D 1 
HETATM 3 C CM2 D16 . . . L 3 -10.767 -17.674 45.171 1 60.89 ? CM2 D16 609 D 1 
HETATM 4 N N3 D16 . . . L 3 -8.452 -16.887 44.527 1 58.21 ? N3 D16 609 D 1 
HETATM 5 C C4 D16 . . . L 3 -7.409 -15.93 44.445 1 54.57 ? C4 D16 609 D 1 
HETATM 6 O O4 D16 . . . L 3 -6.345 -16.183 43.929 1 59.88 ? O4 D16 609 D 1 
HETATM 7 C C4A D16 . . . L 3 -7.709 -14.565 45.042 1 53.94 ? C4A D16 609 D 1 
HETATM 8 C C5 D16 . . . L 3 -6.774 -13.511 45.029 1 49.72 ? C5 D16 609 D 1 
HETATM 9 C C6 D16 . . . L 3 -7.043 -12.207 45.588 1 55.72 ? C6 D16 609 D 1 
HETATM 10 C C7 D16 . . . L 3 -8.341 -12.008 46.187 1 55.72 ? C7 D16 609 D 1 
HETATM 11 C C8 D16 . . . L 3 -9.312 -13.054 46.218 1 57.57 ? C8 D16 609 D 1 
HETATM 12 C C8A D16 . . . L 3 -8.978 -14.302 45.648 1 55.37 ? C8A D16 609 D 1 
HETATM 13 C C9 D16 . . . L 3 -5.965 -11.041 45.544 1 55.88 ? C9 D16 609 D 1 
HETATM 14 N N10 D16 . . . L 3 -4.818 -11.119 44.494 1 53.69 ? N10 D16 609 D 1 
HETATM 15 C C11 D16 . . . L 3 -5.862 -10.891 40.691 1 62.13 ? C11 D16 609 D 1 
HETATM 16 S S13 D16 . . . L 3 -6.575 -10.751 42.269 1 60.88 ? S13 D16 609 D 1 
HETATM 17 C C14 D16 . . . L 3 -5.07 -11.097 43.066 1 57.54 ? C14 D16 609 D 1 
HETATM 18 C C15 D16 . . . L 3 -4.13 -11.316 42.111 1 52.96 ? C15 D16 609 D 1 
HETATM 19 C C16 D16 . . . L 3 -4.551 -11.197 40.792 1 55.02 ? C16 D16 609 D 1 
HETATM 20 C C D16 . . . L 3 -6.754 -10.67 39.446 1 67.41 ? C D16 609 D 1 
HETATM 21 O O D16 . . . L 3 -7.926 -10.26 39.611 1 71.98 ? O D16 609 D 1 
HETATM 22 N N D16 . . . L 3 -6.159 -10.793 38.202 1 68.09 ? N D16 609 D 1 
HETATM 23 C CA D16 . . . L 3 -6.971 -10.519 37.001 1 70.19 ? CA D16 609 D 1 
HETATM 24 C CB D16 . . . L 3 -6.882 -9.018 36.486 1 69.6 ? CB D16 609 D 1 
HETATM 25 C CG D16 . . . L 3 -7.539 -7.792 37.267 1 69.73 ? CG D16 609 D 1 
HETATM 26 C CD D16 . . . L 3 -7.936 -6.581 36.335 1 71.16 ? CD D16 609 D 1 
HETATM 27 O OE1 D16 . . . L 3 -9.025 -6.041 36.592 1 72.32 ? OE1 D16 609 D 1 
HETATM 28 O OE2 D16 . . . L 3 -7.123 -6.281 35.431 1 63.81 ? OE2 D16 609 D 1 
HETATM 29 C CT D16 . . . L 3 -6.707 -11.675 35.95 1 72.27 ? CT D16 609 D 1 
HETATM 30 O O1 D16 . . . L 3 -5.572 -11.691 35.428 1 72.02 ? O1 D16 609 D 1 
HETATM 31 O O2 D16 . . . L 3 -7.652 -12.456 35.751 1 70.56 ? O2 D16 609 D 1 
HETATM 32 C CP1 D16 . . . L 3 -3.439 -11.057 45.012 1 48.35 ? CP1 D16 609 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#