data_2UPJ # _model_server_result.job_id 8KJHE7UunpUB9ri-8VelzA _model_server_result.datetime_utc '2025-03-02 14:58:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2upj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 2UPJ # _exptl.entry_id 2UPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.665 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-(3-{[6-(1-BENZYL-PROPYL)-4-HYDROXY-2-OXO-2H-PYRAN-3-YL]-CYCLOPROPYL-METHYL}-PHENYLCARBAMOYL)-ETHYL]-CARBAMIC ACID TERT-BUTYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2UPJ _cell.length_a 59.26 _cell.length_b 87.214 _cell.length_c 46.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2UPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H38 N2 O6' _chem_comp.formula_weight 558.665 _chem_comp.id U02 _chem_comp.mon_nstd_flag . _chem_comp.name '[2-(3-{[6-(1-BENZYL-PROPYL)-4-HYDROXY-2-OXO-2H-PYRAN-3-YL]-CYCLOPROPYL-METHYL}-PHENYLCARBAMOYL)-ETHYL]-CARBAMIC ACID TERT-BUTYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CZ8 CZ5 U02 sing 358 n n CZ8 HZ81 U02 sing 359 n n CZ8 HZ82 U02 sing 360 n n CZ8 HZ83 U02 sing 361 n n CZ7 CZ5 U02 sing 362 n n CZ7 HZ71 U02 sing 363 n n CZ7 HZ72 U02 sing 364 n n CZ7 HZ73 U02 sing 365 n n CZ6 CZ5 U02 sing 366 n n CZ6 HZ61 U02 sing 367 n n CZ6 HZ62 U02 sing 368 n n CZ6 HZ63 U02 sing 369 n n CZ5 OZ5 U02 sing 370 n n OZ5 CZ4 U02 sing 371 n n CZ4 OZ4 U02 doub 372 n n CZ4 NZ3 U02 sing 373 n n NZ3 CZ3 U02 sing 374 n n NZ3 HNZ3 U02 sing 375 n n CZ3 CZ2 U02 sing 376 n n CZ3 HZ31 U02 sing 377 n n CZ3 HZ32 U02 sing 378 n n CZ2 CZ1 U02 sing 379 n n CZ2 HZ21 U02 sing 380 n n CZ2 HZ22 U02 sing 381 n n CZ1 OZ1 U02 doub 382 n n CZ1 NZ1 U02 sing 383 n n NZ1 CB5 U02 sing 384 n n NZ1 HNZ1 U02 sing 385 n n CB5 CB4 U02 doub 386 n y CB5 CB6 U02 sing 387 n y CB4 CB3 U02 sing 388 n y CB4 HB4 U02 sing 389 n n CB3 CB2 U02 doub 390 n y CB3 HB3 U02 sing 391 n n CB2 CB1 U02 sing 392 n y CB2 HB2 U02 sing 393 n n CB1 CB6 U02 doub 394 n y CB1 CG1 U02 sing 395 n n CB6 HB6 U02 sing 396 n n CG1 CG2 U02 sing 397 n n CG1 CA U02 sing 398 n n CG1 HG1 U02 sing 399 n n CG2 CG3 U02 sing 400 n n CG2 CG4 U02 sing 401 n n CG2 HG2 U02 sing 402 n n CG3 CG4 U02 doub 403 n n CG3 HG3 U02 sing 404 n n CG4 HG4 U02 sing 405 n n CA CA2 U02 sing 406 n y CA CA6 U02 doub 407 n y CA2 OA2 U02 doub 408 n n CA2 OA3 U02 sing 409 n y OA3 CA4 U02 sing 410 n y CA4 CA5 U02 doub 411 n y CA4 CD U02 sing 412 n n CA5 CA6 U02 sing 413 n y CA5 HA5 U02 sing 414 n n CA6 OA6 U02 sing 415 n n OA6 HO6 U02 sing 416 n n CD CD1 U02 sing 417 n n CD CE U02 sing 418 n n CD HD U02 sing 419 n n CD1 CD2 U02 sing 420 n n CD1 HD11 U02 sing 421 n n CD1 HD12 U02 sing 422 n n CD2 HD21 U02 sing 423 n n CD2 HD22 U02 sing 424 n n CD2 HD23 U02 sing 425 n n CE CE1 U02 sing 426 n n CE HE1 U02 sing 427 n n CE HE2A U02 sing 428 n n CE1 CE2 U02 doub 429 n y CE1 CE6 U02 sing 430 n y CE2 CE3 U02 sing 431 n y CE2 HE2 U02 sing 432 n n CE3 CE4 U02 doub 433 n y CE3 HE3 U02 sing 434 n n CE4 CE5 U02 sing 435 n y CE4 HE4 U02 sing 436 n n CE5 CE6 U02 doub 437 n y CE5 HE5 U02 sing 438 n n CE6 HE6 U02 sing 439 n n # _atom_sites.entry_id 2UPJ _atom_sites.fract_transf_matrix[1][1] 0.016875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U02 A 1 100 1 U02 U02 . D 3 HOH A 1 302 302 HOH HOH . D 3 HOH A 2 303 303 HOH HOH . D 3 HOH A 3 305 305 HOH HOH . D 3 HOH A 4 306 306 HOH HOH . D 3 HOH A 5 309 309 HOH HOH . D 3 HOH A 6 310 310 HOH HOH . D 3 HOH A 7 311 311 HOH HOH . D 3 HOH A 8 312 312 HOH HOH . D 3 HOH A 9 313 313 HOH HOH . D 3 HOH A 10 314 314 HOH HOH . D 3 HOH A 11 318 318 HOH HOH . D 3 HOH A 12 319 319 HOH HOH . D 3 HOH A 13 320 320 HOH HOH . D 3 HOH A 14 321 321 HOH HOH . D 3 HOH A 15 322 322 HOH HOH . D 3 HOH A 16 324 324 HOH HOH . D 3 HOH A 17 325 325 HOH HOH . D 3 HOH A 18 326 326 HOH HOH . D 3 HOH A 19 327 327 HOH HOH . D 3 HOH A 20 328 328 HOH HOH . D 3 HOH A 21 329 329 HOH HOH . D 3 HOH A 22 330 330 HOH HOH . D 3 HOH A 23 331 331 HOH HOH . D 3 HOH A 24 347 347 HOH HOH . D 3 HOH A 25 348 348 HOH HOH . D 3 HOH A 26 349 349 HOH HOH . D 3 HOH A 27 350 350 HOH HOH . D 3 HOH A 28 351 351 HOH HOH . D 3 HOH A 29 362 362 HOH HOH . E 3 HOH B 1 301 301 HOH HOH . E 3 HOH B 2 307 307 HOH HOH . E 3 HOH B 3 308 308 HOH HOH . E 3 HOH B 4 315 315 HOH HOH . E 3 HOH B 5 316 316 HOH HOH . E 3 HOH B 6 317 317 HOH HOH . E 3 HOH B 7 332 332 HOH HOH . E 3 HOH B 8 333 333 HOH HOH . E 3 HOH B 9 334 334 HOH HOH . E 3 HOH B 10 335 335 HOH HOH . E 3 HOH B 11 336 336 HOH HOH . E 3 HOH B 12 337 337 HOH HOH . E 3 HOH B 13 338 338 HOH HOH . E 3 HOH B 14 339 339 HOH HOH . E 3 HOH B 15 340 340 HOH HOH . E 3 HOH B 16 341 341 HOH HOH . E 3 HOH B 17 342 342 HOH HOH . E 3 HOH B 18 343 343 HOH HOH . E 3 HOH B 19 344 344 HOH HOH . E 3 HOH B 20 353 353 HOH HOH . E 3 HOH B 21 354 354 HOH HOH . E 3 HOH B 22 355 355 HOH HOH . E 3 HOH B 23 356 356 HOH HOH . E 3 HOH B 24 358 358 HOH HOH . E 3 HOH B 25 359 359 HOH HOH . E 3 HOH B 26 360 360 HOH HOH . E 3 HOH B 27 361 361 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CZ8 U02 . . . C 2 4.014 25.48 1.328 1 52.8 ? CZ8 U02 100 A 1 HETATM 2 C CZ7 U02 . . . C 2 5.323 24.029 2.861 1 39.9 ? CZ7 U02 100 A 1 HETATM 3 C CZ6 U02 . . . C 2 6.461 25.101 0.909 1 43.6 ? CZ6 U02 100 A 1 HETATM 4 C CZ5 U02 . . . C 2 5.382 25.289 1.986 1 49.2 ? CZ5 U02 100 A 1 HETATM 5 O OZ5 U02 . . . C 2 5.787 26.481 2.69 1 57.2 ? OZ5 U02 100 A 1 HETATM 6 C CZ4 U02 . . . C 2 5.116 26.818 3.862 1 47.7 ? CZ4 U02 100 A 1 HETATM 7 O OZ4 U02 . . . C 2 4.161 26.128 4.249 1 57.6 ? OZ4 U02 100 A 1 HETATM 8 N NZ3 U02 . . . C 2 5.536 27.908 4.486 1 23.9 ? NZ3 U02 100 A 1 HETATM 9 C CZ3 U02 . . . C 2 5.014 28.263 5.817 1 11.9 ? CZ3 U02 100 A 1 HETATM 10 C CZ2 U02 . . . C 2 5.978 28.961 6.79 1 9.4 ? CZ2 U02 100 A 1 HETATM 11 C CZ1 U02 . . . C 2 7.395 28.415 6.765 1 16 ? CZ1 U02 100 A 1 HETATM 12 O OZ1 U02 . . . C 2 8.363 29.126 6.495 1 23.8 ? OZ1 U02 100 A 1 HETATM 13 N NZ1 U02 . . . C 2 7.538 27.125 7.015 1 18.6 ? NZ1 U02 100 A 1 HETATM 14 C CB5 U02 . . . C 2 8.864 26.639 6.934 1 26.1 ? CB5 U02 100 A 1 HETATM 15 C CB4 U02 . . . C 2 9.716 26.94 7.991 1 39.9 ? CB4 U02 100 A 1 HETATM 16 C CB3 U02 . . . C 2 11.027 26.477 8.004 1 39 ? CB3 U02 100 A 1 HETATM 17 C CB2 U02 . . . C 2 11.494 25.699 6.953 1 25.3 ? CB2 U02 100 A 1 HETATM 18 C CB1 U02 . . . C 2 10.662 25.408 5.876 1 15.1 ? CB1 U02 100 A 1 HETATM 19 C CB6 U02 . . . C 2 9.327 25.844 5.874 1 18.9 ? CB6 U02 100 A 1 HETATM 20 C CG1 U02 . . . C 2 11.319 24.656 4.714 1 14.3 ? CG1 U02 100 A 1 HETATM 21 C CG2 U02 . . . C 2 10.274 23.969 3.886 1 20.8 ? CG2 U02 100 A 1 HETATM 22 C CG3 U02 . . . C 2 10.368 23.731 2.398 1 24.5 ? CG3 U02 100 A 1 HETATM 23 C CG4 U02 . . . C 2 9.272 24.616 2.959 1 27.3 ? CG4 U02 100 A 1 HETATM 24 C CA U02 . . . C 2 12.491 23.747 5.155 1 15.9 ? CA U02 100 A 1 HETATM 25 C CA2 U02 . . . C 2 12.129 22.583 5.863 1 23.5 ? CA2 U02 100 A 1 HETATM 26 O OA2 U02 . . . C 2 11.003 22.154 5.905 1 32.1 ? OA2 U02 100 A 1 HETATM 27 O OA3 U02 . . . C 2 13.074 21.74 6.23 1 22 ? OA3 U02 100 A 1 HETATM 28 C CA4 U02 . . . C 2 14.378 21.95 5.952 1 23.9 ? CA4 U02 100 A 1 HETATM 29 C CA5 U02 . . . C 2 14.818 23.109 5.304 1 15.4 ? CA5 U02 100 A 1 HETATM 30 C CA6 U02 . . . C 2 13.854 24.026 4.881 1 11.1 ? CA6 U02 100 A 1 HETATM 31 O OA6 U02 . . . C 2 14.371 25.219 4.469 1 7.8 ? OA6 U02 100 A 1 HETATM 32 C CD U02 . . . C 2 15.344 20.85 6.081 1 22.8 ? CD U02 100 A 1 HETATM 33 C CD1 U02 . . . C 2 16.53 21.265 6.966 1 17.1 ? CD1 U02 100 A 1 HETATM 34 C CD2 U02 . . . C 2 16.062 22.076 8.195 1 8.5 ? CD2 U02 100 A 1 HETATM 35 C CE U02 . . . C 2 15.631 20.416 4.63 1 17.1 ? CE U02 100 A 1 HETATM 36 C CE1 U02 . . . C 2 16.818 19.506 4.39 1 34.1 ? CE1 U02 100 A 1 HETATM 37 C CE2 U02 . . . C 2 17.105 19.109 3.091 1 56.7 ? CE2 U02 100 A 1 HETATM 38 C CE3 U02 . . . C 2 18.202 18.294 2.84 1 65.6 ? CE3 U02 100 A 1 HETATM 39 C CE4 U02 . . . C 2 19.009 17.865 3.886 1 61.6 ? CE4 U02 100 A 1 HETATM 40 C CE5 U02 . . . C 2 18.707 18.257 5.184 1 50 ? CE5 U02 100 A 1 HETATM 41 C CE6 U02 . . . C 2 17.611 19.073 5.438 1 57.9 ? CE6 U02 100 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 866 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 41 #