data_2UV8 # _model_server_result.job_id 4rbzogQJMcia-ITeku3qXw _model_server_result.datetime_utc '2024-12-01 01:34:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2uv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3051}' # _entry.id 2UV8 # _exptl.entry_id 2UV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2UV8 _cell.length_a 230.6 _cell.length_b 230.6 _cell.length_c 784.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2UV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 179 A LYS 179 1_555 A N GVL 180 A GVL 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C GVL 180 A GVL 180 1_555 A N THR 181 A THR 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C LYS 179 B LYS 179 1_555 B N GVL 180 B GVL 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 B C GVL 180 B GVL 180 1_555 B N THR 181 B THR 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C LYS 179 C LYS 179 1_555 C N GVL 180 C GVL 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 C C GVL 180 C GVL 180 1_555 C N THR 181 C THR 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2UV8 _atom_sites.fract_transf_matrix[1][1] 0.004337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 FMN G 1 3051 3051 FMN FMN . H 3 FMN H 1 3051 3051 FMN FMN . I 3 FMN I 1 3051 3051 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 3 123.302 -14.338 -2.331 1 60.37 ? N1 FMN 3051 H 1 HETATM 2 C C2 FMN . . . H 3 122.537 -13.55 -3.392 1 46.79 ? C2 FMN 3051 H 1 HETATM 3 O O2 FMN . . . H 3 121.956 -14.265 -4.456 1 80.15 ? O2 FMN 3051 H 1 HETATM 4 N N3 FMN . . . H 3 122.42 -12.031 -3.266 1 72.37 ? N3 FMN 3051 H 1 HETATM 5 C C4 FMN . . . H 3 123.041 -11.289 -2.116 1 66.01 ? C4 FMN 3051 H 1 HETATM 6 O O4 FMN . . . H 3 122.926 -9.878 -2.017 1 41.72 ? O4 FMN 3051 H 1 HETATM 7 C C4A FMN . . . H 3 123.795 -12.098 -1.063 1 27.82 ? C4A FMN 3051 H 1 HETATM 8 N N5 FMN . . . H 3 124.444 -11.412 0.107 1 54.33 ? N5 FMN 3051 H 1 HETATM 9 C C5A FMN . . . H 3 125.198 -12.223 1.13 1 51.53 ? C5A FMN 3051 H 1 HETATM 10 C C6 FMN . . . H 3 125.879 -11.493 2.353 1 62.34 ? C6 FMN 3051 H 1 HETATM 11 C C7 FMN . . . H 3 126.668 -12.327 3.418 1 51.69 ? C7 FMN 3051 H 1 HETATM 12 C C7M FMN . . . H 3 127.318 -11.59 4.607 1 51.88 ? C7M FMN 3051 H 1 HETATM 13 C C8 FMN . . . H 3 126.776 -13.886 3.262 1 56.35 ? C8 FMN 3051 H 1 HETATM 14 C C8M FMN . . . H 3 127.538 -14.734 4.295 1 58.23 ? C8M FMN 3051 H 1 HETATM 15 C C9 FMN . . . H 3 126.115 -14.61 2.059 1 39.93 ? C9 FMN 3051 H 1 HETATM 16 C C9A FMN . . . H 3 125.322 -13.753 0.982 1 45.15 ? C9A FMN 3051 H 1 HETATM 17 N N10 FMN . . . H 3 124.663 -14.436 -0.17 1 54.07 ? N10 FMN 3051 H 1 HETATM 18 C C10 FMN . . . H 3 123.903 -13.623 -1.192 1 52.21 ? C10 FMN 3051 H 1 HETATM 19 C C1' FMN . . . H 3 124.771 -15.889 -0.368 1 56.41 ? C1' FMN 3051 H 1 HETATM 20 C C2' FMN . . . H 3 126.201 -16.189 -0.933 1 64.42 ? C2' FMN 3051 H 1 HETATM 21 O O2' FMN . . . H 3 126.387 -15.533 -2.174 1 37.98 ? O2' FMN 3051 H 1 HETATM 22 C C3' FMN . . . H 3 126.38 -17.701 -1.195 1 56.75 ? C3' FMN 3051 H 1 HETATM 23 O O3' FMN . . . H 3 125.233 -18.204 -1.864 1 32.02 ? O3' FMN 3051 H 1 HETATM 24 C C4' FMN . . . H 3 126.603 -18.389 0.17 1 60.22 ? C4' FMN 3051 H 1 HETATM 25 O O4' FMN . . . H 3 127.21 -17.454 1.046 1 57.49 ? O4' FMN 3051 H 1 HETATM 26 C C5' FMN . . . H 3 127.596 -19.552 0.012 1 40.26 ? C5' FMN 3051 H 1 HETATM 27 O O5' FMN . . . H 3 127.581 -20.181 1.262 1 78.46 ? O5' FMN 3051 H 1 HETATM 28 P P FMN . . . H 3 128.962 -20.203 2.149 1 75.5 ? P FMN 3051 H 1 HETATM 29 O O1P FMN . . . H 3 128.833 -21.161 3.255 1 61.51 ? O1P FMN 3051 H 1 HETATM 30 O O2P FMN . . . H 3 130.208 -20.622 1.141 1 82.86 ? O2P FMN 3051 H 1 HETATM 31 O O3P FMN . . . H 3 129.155 -18.672 2.736 1 39.25 ? O3P FMN 3051 H 1 # _model_server_stats.io_time_ms 195 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 80 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #