data_2UVN # _model_server_result.job_id xiN4BtM2VEbtOIEfzwLMEA _model_server_result.datetime_utc '2024-12-02 23:54:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2uvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1405}' # _entry.id 2UVN # _exptl.entry_id 2UVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2UVN _cell.length_a 130.676 _cell.length_b 130.676 _cell.length_c 229.357 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2UVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -76.452333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 361 A CYS 354 1_555 C FE HEM . A HEM 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc2 C FE HEM . A HEM 1408 1_555 D N19 ECN . A ECN 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc3 B SG CYS 361 B CYS 354 1_555 L FE HEM . B HEM 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc4 L FE HEM . B HEM 1405 1_555 M N19 ECN . B ECN 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 170 n n CHA C4D HEM doub 171 n n CHA HHA HEM sing 172 n n CHB C4A HEM sing 173 n n CHB C1B HEM doub 174 n n CHB HHB HEM sing 175 n n CHC C4B HEM sing 176 n n CHC C1C HEM doub 177 n n CHC HHC HEM sing 178 n n CHD C4C HEM doub 179 n n CHD C1D HEM sing 180 n n CHD HHD HEM sing 181 n n C1A C2A HEM doub 182 n y C1A NA HEM sing 183 n y C2A C3A HEM sing 184 n y C2A CAA HEM sing 185 n n C3A C4A HEM doub 186 n y C3A CMA HEM sing 187 n n C4A NA HEM sing 188 n y CMA HMA HEM sing 189 n n CMA HMAA HEM sing 190 n n CMA HMAB HEM sing 191 n n CAA CBA HEM sing 192 n n CAA HAA HEM sing 193 n n CAA HAAA HEM sing 194 n n CBA CGA HEM sing 195 n n CBA HBA HEM sing 196 n n CBA HBAA HEM sing 197 n n CGA O1A HEM doub 198 n n CGA O2A HEM sing 199 n n C1B C2B HEM sing 200 n n C1B NB HEM sing 201 n n C2B C3B HEM doub 202 n n C2B CMB HEM sing 203 n n C3B C4B HEM sing 204 n n C3B CAB HEM sing 205 n n C4B NB HEM doub 206 n n CMB HMB HEM sing 207 n n CMB HMBA HEM sing 208 n n CMB HMBB HEM sing 209 n n CAB CBB HEM doub 210 n n CAB HAB HEM sing 211 n n CBB HBB HEM sing 212 n n CBB HBBA HEM sing 213 n n C1C C2C HEM sing 214 n y C1C NC HEM sing 215 n y C2C C3C HEM doub 216 n y C2C CMC HEM sing 217 n n C3C C4C HEM sing 218 n y C3C CAC HEM sing 219 n n C4C NC HEM sing 220 n y CMC HMC HEM sing 221 n n CMC HMCA HEM sing 222 n n CMC HMCB HEM sing 223 n n CAC CBC HEM doub 224 n n CAC HAC HEM sing 225 n n CBC HBC HEM sing 226 n n CBC HBCA HEM sing 227 n n C1D C2D HEM sing 228 n n C1D ND HEM doub 229 n n C2D C3D HEM doub 230 n n C2D CMD HEM sing 231 n n C3D C4D HEM sing 232 n n C3D CAD HEM sing 233 n n C4D ND HEM sing 234 n n CMD HMD HEM sing 235 n n CMD HMDA HEM sing 236 n n CMD HMDB HEM sing 237 n n CAD CBD HEM sing 238 n n CAD HAD HEM sing 239 n n CAD HADA HEM sing 240 n n CBD CGD HEM sing 241 n n CBD HBD HEM sing 242 n n CBD HBDA HEM sing 243 n n CGD O1D HEM doub 244 n n CGD O2D HEM sing 245 n n O2A H2A HEM sing 246 n n O2D H2D HEM sing 247 n n FE NA HEM sing 248 n n FE NB HEM sing 249 n n FE NC HEM sing 250 n n FE ND HEM sing 251 n n # _atom_sites.entry_id 2UVN _atom_sites.fract_transf_matrix[1][1] 0.007653 _atom_sites.fract_transf_matrix[1][2] 0.004418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 1408 1408 HEM HEM . D 3 ECN A 1 1409 1409 ECN ECN . E 4 F A 1 1410 1410 F F . F 4 F A 1 1411 1411 F F . G 4 F A 1 1412 1412 F F . H 5 SO4 A 1 1413 1413 SO4 SO4 . I 5 SO4 A 1 1414 1414 SO4 SO4 . J 5 SO4 A 1 1415 1415 SO4 SO4 . K 4 F A 1 1416 1416 F F . L 2 HEM B 1 1405 1405 HEM HEM . M 3 ECN B 1 1406 1406 ECN ECN . N 4 F B 1 1407 1407 F F . O 4 F B 1 1408 1408 F F . P 4 F B 1 1409 1409 F F . Q 4 F B 1 1410 1410 F F . R 4 F B 1 1411 1411 F F . S 4 F B 1 1412 1412 F F . T 4 F B 1 1413 1413 F F . U 4 F B 1 1414 1414 F F . V 4 F B 1 1415 1415 F F . W 5 SO4 B 1 1416 1416 SO4 SO4 . X 4 F B 1 1417 1417 F F . Y 6 HOH A 1 2001 2001 HOH HOH . Y 6 HOH A 2 2002 2002 HOH HOH . Y 6 HOH A 3 2003 2003 HOH HOH . Y 6 HOH A 4 2004 2004 HOH HOH . Y 6 HOH A 5 2005 2005 HOH HOH . Y 6 HOH A 6 2006 2006 HOH HOH . Y 6 HOH A 7 2007 2007 HOH HOH . Y 6 HOH A 8 2008 2008 HOH HOH . Y 6 HOH A 9 2009 2009 HOH HOH . Y 6 HOH A 10 2010 2010 HOH HOH . Y 6 HOH A 11 2011 2011 HOH HOH . Y 6 HOH A 12 2012 2012 HOH HOH . Y 6 HOH A 13 2013 2013 HOH HOH . Y 6 HOH A 14 2014 2014 HOH HOH . Y 6 HOH A 15 2015 2015 HOH HOH . Y 6 HOH A 16 2016 2016 HOH HOH . Y 6 HOH A 17 2017 2017 HOH HOH . Y 6 HOH A 18 2018 2018 HOH HOH . Y 6 HOH A 19 2019 2019 HOH HOH . Y 6 HOH A 20 2020 2020 HOH HOH . Y 6 HOH A 21 2021 2021 HOH HOH . Y 6 HOH A 22 2022 2022 HOH HOH . Y 6 HOH A 23 2023 2023 HOH HOH . Y 6 HOH A 24 2024 2024 HOH HOH . Y 6 HOH A 25 2025 2025 HOH HOH . Y 6 HOH A 26 2026 2026 HOH HOH . Y 6 HOH A 27 2027 2027 HOH HOH . Y 6 HOH A 28 2028 2028 HOH HOH . Y 6 HOH A 29 2029 2029 HOH HOH . Y 6 HOH A 30 2030 2030 HOH HOH . Y 6 HOH A 31 2031 2031 HOH HOH . Y 6 HOH A 32 2032 2032 HOH HOH . Y 6 HOH A 33 2033 2033 HOH HOH . Y 6 HOH A 34 2034 2034 HOH HOH . Y 6 HOH A 35 2035 2035 HOH HOH . Y 6 HOH A 36 2036 2036 HOH HOH . Y 6 HOH A 37 2037 2037 HOH HOH . Y 6 HOH A 38 2038 2038 HOH HOH . Y 6 HOH A 39 2039 2039 HOH HOH . Y 6 HOH A 40 2040 2040 HOH HOH . Y 6 HOH A 41 2041 2041 HOH HOH . Y 6 HOH A 42 2042 2042 HOH HOH . Z 6 HOH B 1 2001 2001 HOH HOH . Z 6 HOH B 2 2002 2002 HOH HOH . Z 6 HOH B 3 2003 2003 HOH HOH . Z 6 HOH B 4 2004 2004 HOH HOH . Z 6 HOH B 5 2005 2005 HOH HOH . Z 6 HOH B 6 2006 2006 HOH HOH . Z 6 HOH B 7 2007 2007 HOH HOH . Z 6 HOH B 8 2008 2008 HOH HOH . Z 6 HOH B 9 2009 2009 HOH HOH . Z 6 HOH B 10 2010 2010 HOH HOH . Z 6 HOH B 11 2011 2011 HOH HOH . Z 6 HOH B 12 2012 2012 HOH HOH . Z 6 HOH B 13 2013 2013 HOH HOH . Z 6 HOH B 14 2014 2014 HOH HOH . Z 6 HOH B 15 2015 2015 HOH HOH . Z 6 HOH B 16 2016 2016 HOH HOH . Z 6 HOH B 17 2017 2017 HOH HOH . Z 6 HOH B 18 2018 2018 HOH HOH . Z 6 HOH B 19 2019 2019 HOH HOH . Z 6 HOH B 20 2020 2020 HOH HOH . Z 6 HOH B 21 2021 2021 HOH HOH . Z 6 HOH B 22 2022 2022 HOH HOH . Z 6 HOH B 23 2023 2023 HOH HOH . Z 6 HOH B 24 2024 2024 HOH HOH . Z 6 HOH B 25 2025 2025 HOH HOH . Z 6 HOH B 26 2026 2026 HOH HOH . Z 6 HOH B 27 2027 2027 HOH HOH . Z 6 HOH B 28 2028 2028 HOH HOH . Z 6 HOH B 29 2029 2029 HOH HOH . Z 6 HOH B 30 2030 2030 HOH HOH . Z 6 HOH B 31 2031 2031 HOH HOH . Z 6 HOH B 32 2032 2032 HOH HOH . Z 6 HOH B 33 2033 2033 HOH HOH . Z 6 HOH B 34 2034 2034 HOH HOH . Z 6 HOH B 35 2035 2035 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . L 2 -56.188 52.286 -61.731 1 62.89 ? CHA HEM 1405 B 1 HETATM 2 C CHB HEM . . . L 2 -56.205 55.869 -64.953 1 61.48 ? CHB HEM 1405 B 1 HETATM 3 C CHC HEM . . . L 2 -61.022 55.753 -65.12 1 61.82 ? CHC HEM 1405 B 1 HETATM 4 C CHD HEM . . . L 2 -61.012 52.42 -61.615 1 62.29 ? CHD HEM 1405 B 1 HETATM 5 C C1A HEM . . . L 2 -55.77 53.295 -62.569 1 61.43 ? C1A HEM 1405 B 1 HETATM 6 C C2A HEM . . . L 2 -54.379 53.592 -62.832 1 61.57 ? C2A HEM 1405 B 1 HETATM 7 C C3A HEM . . . L 2 -54.392 54.631 -63.71 1 61.89 ? C3A HEM 1405 B 1 HETATM 8 C C4A HEM . . . L 2 -55.788 54.935 -64.003 1 61.51 ? C4A HEM 1405 B 1 HETATM 9 C CMA HEM . . . L 2 -53.151 55.353 -64.262 1 61.67 ? CMA HEM 1405 B 1 HETATM 10 C CAA HEM . . . L 2 -53.126 52.937 -62.229 1 61.83 ? CAA HEM 1405 B 1 HETATM 11 C CBA HEM . . . L 2 -52.338 53.953 -61.413 1 62.56 ? CBA HEM 1405 B 1 HETATM 12 C CGA HEM . . . L 2 -51.034 53.411 -60.879 1 63.97 ? CGA HEM 1405 B 1 HETATM 13 O O1A HEM . . . L 2 -51.065 52.485 -60.038 1 66.49 ? O1A HEM 1405 B 1 HETATM 14 O O2A HEM . . . L 2 -49.974 53.915 -61.3 1 64.51 ? O2A HEM 1405 B 1 HETATM 15 C C1B HEM . . . L 2 -57.525 56.122 -65.287 1 60.46 ? C1B HEM 1405 B 1 HETATM 16 C C2B HEM . . . L 2 -57.913 56.993 -66.373 1 60.35 ? C2B HEM 1405 B 1 HETATM 17 C C3B HEM . . . L 2 -59.281 56.937 -66.461 1 60.51 ? C3B HEM 1405 B 1 HETATM 18 C C4B HEM . . . L 2 -59.702 56.055 -65.38 1 60.35 ? C4B HEM 1405 B 1 HETATM 19 C CMB HEM . . . L 2 -56.956 57.744 -67.297 1 59.13 ? CMB HEM 1405 B 1 HETATM 20 C CAB HEM . . . L 2 -60.117 57.492 -67.441 1 59.57 ? CAB HEM 1405 B 1 HETATM 21 C CBB HEM . . . L 2 -59.936 58.761 -68.148 1 58.13 ? CBB HEM 1405 B 1 HETATM 22 C C1C HEM . . . L 2 -61.436 54.828 -64.161 1 62.21 ? C1C HEM 1405 B 1 HETATM 23 C C2C HEM . . . L 2 -62.844 54.547 -63.847 1 61.14 ? C2C HEM 1405 B 1 HETATM 24 C C3C HEM . . . L 2 -62.826 53.546 -62.934 1 61.12 ? C3C HEM 1405 B 1 HETATM 25 C C4C HEM . . . L 2 -61.431 53.301 -62.589 1 61.96 ? C4C HEM 1405 B 1 HETATM 26 C CMC HEM . . . L 2 -64.07 55.286 -64.372 1 59.37 ? CMC HEM 1405 B 1 HETATM 27 C CAC HEM . . . L 2 -63.891 52.752 -62.576 1 60.14 ? CAC HEM 1405 B 1 HETATM 28 C CBC HEM . . . L 2 -65.049 53.268 -61.919 1 59.81 ? CBC HEM 1405 B 1 HETATM 29 C C1D HEM . . . L 2 -59.701 52.173 -61.295 1 61.76 ? C1D HEM 1405 B 1 HETATM 30 C C2D HEM . . . L 2 -59.296 51.146 -60.351 1 61.86 ? C2D HEM 1405 B 1 HETATM 31 C C3D HEM . . . L 2 -57.939 51.019 -60.473 1 60.78 ? C3D HEM 1405 B 1 HETATM 32 C C4D HEM . . . L 2 -57.536 52.005 -61.459 1 62.22 ? C4D HEM 1405 B 1 HETATM 33 C CMD HEM . . . L 2 -60.204 50.446 -59.34 1 60.51 ? CMD HEM 1405 B 1 HETATM 34 C CAD HEM . . . L 2 -56.966 50.258 -59.578 1 57.29 ? CAD HEM 1405 B 1 HETATM 35 C CBD HEM . . . L 2 -56.55 48.89 -60.08 1 54.91 ? CBD HEM 1405 B 1 HETATM 36 C CGD HEM . . . L 2 -55.587 48.202 -59.138 1 54.51 ? CGD HEM 1405 B 1 HETATM 37 O O1D HEM . . . L 2 -55.064 48.877 -58.225 1 53.65 ? O1D HEM 1405 B 1 HETATM 38 O O2D HEM . . . L 2 -55.349 46.988 -59.312 1 53.67 ? O2D HEM 1405 B 1 HETATM 39 N NA HEM . . . L 2 -56.643 54.122 -63.277 1 61.11 ? NA HEM 1405 B 1 HETATM 40 N NB HEM . . . L 2 -58.622 55.51 -64.688 1 60.52 ? NB HEM 1405 B 1 HETATM 41 N NC HEM . . . L 2 -60.563 54.073 -63.357 1 62.09 ? NC HEM 1405 B 1 HETATM 42 N ND HEM . . . L 2 -58.621 52.727 -61.951 1 61.61 ? ND HEM 1405 B 1 HETATM 43 FE FE HEM . . . L 2 -58.607 54.142 -63.264 1 57.53 3 FE HEM 1405 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #