data_2UVQ # _model_server_result.job_id XmqXkhemPyFNu98bvlP3QA _model_server_result.datetime_utc '2025-03-01 19:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2uvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1236}' # _entry.id 2UVQ # _exptl.entry_id 2UVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2UVQ _cell.length_a 67.919 _cell.length_b 67.919 _cell.length_c 236.607 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2UVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -33.9595 -58.819579 0 3 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -78.869 4 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -33.9595 -58.819579 -78.869 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2UVQ _atom_sites.fract_transf_matrix[1][1] 0.014723 _atom_sites.fract_transf_matrix[1][2] 0.008501 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1236 1236 ADP ADP . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -3.775 -18.889 -25.823 1 64.46 ? PB ADP 1236 A 1 HETATM 2 O O1B ADP . . . B 2 -3.488 -19.598 -24.541 1 67.73 ? O1B ADP 1236 A 1 HETATM 3 O O2B ADP . . . B 2 -5.218 -18.943 -26.192 1 67.41 ? O2B ADP 1236 A 1 HETATM 4 O O3B ADP . . . B 2 -2.829 -19.234 -26.943 1 66.93 ? O3B ADP 1236 A 1 HETATM 5 P PA ADP . . . B 2 -4.476 -16.315 -24.877 1 68.43 ? PA ADP 1236 A 1 HETATM 6 O O1A ADP . . . B 2 -3.768 -15.273 -24.037 1 69.63 ? O1A ADP 1236 A 1 HETATM 7 O O2A ADP . . . B 2 -5.642 -17.042 -24.254 1 68.27 ? O2A ADP 1236 A 1 HETATM 8 O O3A ADP . . . B 2 -3.421 -17.366 -25.477 1 66.58 ? O3A ADP 1236 A 1 HETATM 9 O O5' ADP . . . B 2 -4.883 -15.575 -26.24 1 67.66 ? O5' ADP 1236 A 1 HETATM 10 C C5' ADP . . . B 2 -6.2 -15.076 -26.385 1 68.88 ? C5' ADP 1236 A 1 HETATM 11 C C4' ADP . . . B 2 -6.143 -13.676 -26.947 1 68.29 ? C4' ADP 1236 A 1 HETATM 12 O O4' ADP . . . B 2 -7.468 -13.254 -27.267 1 68.94 ? O4' ADP 1236 A 1 HETATM 13 C C3' ADP . . . B 2 -5.641 -12.701 -25.912 1 68.61 ? C3' ADP 1236 A 1 HETATM 14 O O3' ADP . . . B 2 -4.907 -11.673 -26.583 1 67.41 ? O3' ADP 1236 A 1 HETATM 15 C C2' ADP . . . B 2 -6.92 -12.196 -25.261 1 68.44 ? C2' ADP 1236 A 1 HETATM 16 O O2' ADP . . . B 2 -6.776 -10.9 -24.672 1 69.05 ? O2' ADP 1236 A 1 HETATM 17 C C1' ADP . . . B 2 -7.894 -12.18 -26.423 1 68.07 ? C1' ADP 1236 A 1 HETATM 18 N N9 ADP . . . B 2 -9.32 -12.38 -26.063 1 67.67 ? N9 ADP 1236 A 1 HETATM 19 C C8 ADP . . . B 2 -10.334 -11.528 -26.341 1 67.07 ? C8 ADP 1236 A 1 HETATM 20 N N7 ADP . . . B 2 -11.505 -12.034 -25.89 1 66.47 ? N7 ADP 1236 A 1 HETATM 21 C C5 ADP . . . B 2 -11.231 -13.23 -25.332 1 66.86 ? C5 ADP 1236 A 1 HETATM 22 C C6 ADP . . . B 2 -11.998 -14.31 -24.665 1 67.94 ? C6 ADP 1236 A 1 HETATM 23 N N6 ADP . . . B 2 -13.332 -14.16 -24.524 1 68.14 ? N6 ADP 1236 A 1 HETATM 24 N N1 ADP . . . B 2 -11.348 -15.419 -24.208 1 67.69 ? N1 ADP 1236 A 1 HETATM 25 C C2 ADP . . . B 2 -10.015 -15.554 -24.357 1 67.42 ? C2 ADP 1236 A 1 HETATM 26 N N3 ADP . . . B 2 -9.25 -14.609 -24.957 1 67.31 ? N3 ADP 1236 A 1 HETATM 27 C C4 ADP . . . B 2 -9.79 -13.459 -25.451 1 67.07 ? C4 ADP 1236 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #