data_2UXN # _model_server_result.job_id ZLfB_lJv8NXFN8Tcc86vag _model_server_result.datetime_utc '2024-11-22 11:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2uxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 2UXN # _exptl.entry_id 2UXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.566 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2UXN _cell.length_a 119.949 _cell.length_b 178.646 _cell.length_c 234.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2UXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C THR 3 E THR 3 1_555 C N LYP 4 E LYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 C CCA LYP 4 E LYP 4 1_555 D N5 FDA . A FDA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale3 C C LYP 4 E LYP 4 1_555 C N GLN 5 E GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C27 H35 N9 O15 P2' _chem_comp.formula_weight 787.566 _chem_comp.id FDA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2UXN _atom_sites.fract_transf_matrix[1][1] 0.008337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FDA A 1 900 900 FDA FDA . E 5 GOL A 1 1837 1837 GOL GOL . F 6 CL A 1 1838 1838 CL CL . G 6 CL A 1 1839 1839 CL CL . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH A 12 2012 2012 HOH HOH . H 7 HOH A 13 2013 2013 HOH HOH . H 7 HOH A 14 2014 2014 HOH HOH . H 7 HOH A 15 2015 2015 HOH HOH . H 7 HOH A 16 2016 2016 HOH HOH . H 7 HOH A 17 2017 2017 HOH HOH . H 7 HOH A 18 2018 2018 HOH HOH . H 7 HOH A 19 2019 2019 HOH HOH . H 7 HOH A 20 2020 2020 HOH HOH . H 7 HOH A 21 2021 2021 HOH HOH . H 7 HOH A 22 2022 2022 HOH HOH . H 7 HOH A 23 2023 2023 HOH HOH . H 7 HOH A 24 2024 2024 HOH HOH . H 7 HOH A 25 2025 2025 HOH HOH . H 7 HOH A 26 2026 2026 HOH HOH . H 7 HOH A 27 2027 2027 HOH HOH . H 7 HOH A 28 2028 2028 HOH HOH . H 7 HOH A 29 2029 2029 HOH HOH . H 7 HOH A 30 2030 2030 HOH HOH . H 7 HOH A 31 2031 2031 HOH HOH . H 7 HOH A 32 2032 2032 HOH HOH . H 7 HOH A 33 2033 2033 HOH HOH . H 7 HOH A 34 2034 2034 HOH HOH . H 7 HOH A 35 2035 2035 HOH HOH . H 7 HOH A 36 2036 2036 HOH HOH . H 7 HOH A 37 2037 2037 HOH HOH . H 7 HOH A 38 2038 2038 HOH HOH . H 7 HOH A 39 2039 2039 HOH HOH . H 7 HOH A 40 2040 2040 HOH HOH . H 7 HOH A 41 2041 2041 HOH HOH . H 7 HOH A 42 2042 2042 HOH HOH . H 7 HOH A 43 2043 2043 HOH HOH . H 7 HOH A 44 2044 2044 HOH HOH . H 7 HOH A 45 2045 2045 HOH HOH . H 7 HOH A 46 2046 2046 HOH HOH . H 7 HOH A 47 2047 2047 HOH HOH . H 7 HOH A 48 2048 2048 HOH HOH . H 7 HOH A 49 2049 2049 HOH HOH . I 7 HOH B 1 2001 2001 HOH HOH . J 7 HOH E 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDA . . . D 4 66.621 67.411 28.762 1 41.63 ? PA FDA 900 A 1 HETATM 2 O O1A FDA . . . D 4 65.551 67.881 29.867 1 37.71 ? O1A FDA 900 A 1 HETATM 3 O O2A FDA . . . D 4 67.876 66.839 29.325 1 42.71 ? O2A FDA 900 A 1 HETATM 4 O O5B FDA . . . D 4 66.919 68.591 27.853 1 45.49 ? O5B FDA 900 A 1 HETATM 5 C C5B FDA . . . D 4 65.963 69.595 27.766 1 43.49 ? C5B FDA 900 A 1 HETATM 6 C C4B FDA . . . D 4 66.699 70.904 27.949 1 45.79 ? C4B FDA 900 A 1 HETATM 7 O O4B FDA . . . D 4 65.789 71.984 27.688 1 47.49 ? O4B FDA 900 A 1 HETATM 8 C C3B FDA . . . D 4 67.191 71.089 29.416 1 42.36 ? C3B FDA 900 A 1 HETATM 9 O O3B FDA . . . D 4 68.552 71.572 29.361 1 47.5 ? O3B FDA 900 A 1 HETATM 10 C C2B FDA . . . D 4 66.327 72.257 29.905 1 41.53 ? C2B FDA 900 A 1 HETATM 11 O O2B FDA . . . D 4 67.034 73.108 30.841 1 43.13 ? O2B FDA 900 A 1 HETATM 12 C C1B FDA . . . D 4 66.209 73.007 28.586 1 46.2 ? C1B FDA 900 A 1 HETATM 13 N N9A FDA . . . D 4 65.11 73.936 28.738 1 44.72 ? N9A FDA 900 A 1 HETATM 14 C C8A FDA . . . D 4 63.97 73.797 29.462 1 39.34 ? C8A FDA 900 A 1 HETATM 15 N N7A FDA . . . D 4 63.207 74.908 29.323 1 44.08 ? N7A FDA 900 A 1 HETATM 16 C C5A FDA . . . D 4 63.857 75.729 28.521 1 46.08 ? C5A FDA 900 A 1 HETATM 17 C C6A FDA . . . D 4 63.581 76.971 28.027 1 49.75 ? C6A FDA 900 A 1 HETATM 18 N N6A FDA . . . D 4 62.457 77.57 28.366 1 50.11 ? N6A FDA 900 A 1 HETATM 19 N N1A FDA . . . D 4 64.445 77.585 27.21 1 58.13 ? N1A FDA 900 A 1 HETATM 20 C C2A FDA . . . D 4 65.587 76.994 26.87 1 59.88 ? C2A FDA 900 A 1 HETATM 21 N N3A FDA . . . D 4 65.88 75.79 27.334 1 54.47 ? N3A FDA 900 A 1 HETATM 22 C C4A FDA . . . D 4 65.049 75.135 28.155 1 48.56 ? C4A FDA 900 A 1 HETATM 23 N N1 FDA . . . D 4 68.371 57.966 31.619 1 57.81 ? N1 FDA 900 A 1 HETATM 24 C C2 FDA . . . D 4 69.158 56.723 31.481 1 58.3 ? C2 FDA 900 A 1 HETATM 25 O O2 FDA . . . D 4 69.614 56.449 30.377 1 58.5 ? O2 FDA 900 A 1 HETATM 26 N N3 FDA . . . D 4 69.411 55.792 32.603 1 60.16 ? N3 FDA 900 A 1 HETATM 27 C C4 FDA . . . D 4 69.207 56.405 33.928 1 59.68 ? C4 FDA 900 A 1 HETATM 28 O O4 FDA . . . D 4 69.872 56.051 34.9 1 62.88 ? O4 FDA 900 A 1 HETATM 29 C C4X FDA . . . D 4 68.179 57.5 34.095 1 58.06 ? C4X FDA 900 A 1 HETATM 30 N N5 FDA . . . D 4 67.597 57.768 35.45 1 58.57 ? N5 FDA 900 A 1 HETATM 31 C C5X FDA . . . D 4 67.104 59.16 35.605 1 56.04 ? C5X FDA 900 A 1 HETATM 32 C C6 FDA . . . D 4 67.028 59.713 36.877 1 56.48 ? C6 FDA 900 A 1 HETATM 33 C C7 FDA . . . D 4 66.586 61.021 37.051 1 56.08 ? C7 FDA 900 A 1 HETATM 34 C C7M FDA . . . D 4 66.517 61.58 38.472 1 58.09 ? C7M FDA 900 A 1 HETATM 35 C C8 FDA . . . D 4 66.223 61.796 35.939 1 55.26 ? C8 FDA 900 A 1 HETATM 36 C C8M FDA . . . D 4 65.735 63.244 36.075 1 54.56 ? C8M FDA 900 A 1 HETATM 37 C C9 FDA . . . D 4 66.295 61.237 34.666 1 54.05 ? C9 FDA 900 A 1 HETATM 38 C C9A FDA . . . D 4 66.736 59.923 34.493 1 54.26 ? C9A FDA 900 A 1 HETATM 39 N N10 FDA . . . D 4 66.825 59.318 33.136 1 53.29 ? N10 FDA 900 A 1 HETATM 40 C C10 FDA . . . D 4 67.803 58.231 32.963 1 55.7 ? C10 FDA 900 A 1 HETATM 41 C C1' FDA . . . D 4 66.266 60.014 31.955 1 49.47 ? C1' FDA 900 A 1 HETATM 42 C C2' FDA . . . D 4 67.291 60.911 31.231 1 48.64 ? C2' FDA 900 A 1 HETATM 43 O O2' FDA . . . D 4 67.967 61.722 32.173 1 48.16 ? O2' FDA 900 A 1 HETATM 44 C C3' FDA . . . D 4 66.575 61.824 30.235 1 47.32 ? C3' FDA 900 A 1 HETATM 45 O O3' FDA . . . D 4 65.783 61.021 29.371 1 47.13 ? O3' FDA 900 A 1 HETATM 46 C C4' FDA . . . D 4 67.492 62.666 29.336 1 48.98 ? C4' FDA 900 A 1 HETATM 47 O O4' FDA . . . D 4 68.69 63.12 29.979 1 50.72 ? O4' FDA 900 A 1 HETATM 48 C C5' FDA . . . D 4 66.709 63.882 28.885 1 46.8 ? C5' FDA 900 A 1 HETATM 49 O O5' FDA . . . D 4 67.02 64.149 27.539 1 47.15 ? O5' FDA 900 A 1 HETATM 50 P P FDA . . . D 4 66.429 65.43 26.785 1 46.21 ? P FDA 900 A 1 HETATM 51 O O1P FDA . . . D 4 65.143 64.863 26.021 1 46.31 ? O1P FDA 900 A 1 HETATM 52 O O2P FDA . . . D 4 67.451 66.017 25.89 1 52.57 ? O2P FDA 900 A 1 HETATM 53 O O3P FDA . . . D 4 65.778 66.394 27.841 1 43.42 ? O3P FDA 900 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 98 _model_server_stats.create_model_time_ms 137 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #