data_2UYG # _model_server_result.job_id u9EvXwvysDYT89XHvX_n1A _model_server_result.datetime_utc '2024-11-13 06:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2uyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1143}' # _entry.id 2UYG # _exptl.entry_id 2UYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2UYG _cell.length_a 84.085 _cell.length_b 151.586 _cell.length_c 159.949 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2UYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2UYG _atom_sites.fract_transf_matrix[1][1] 0.011893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 GOL A 1 1143 1143 GOL GOL . N 2 GOL B 1 1143 1143 GOL GOL . O 2 GOL C 1 1143 1143 GOL GOL . P 2 GOL D 1 1143 1143 GOL GOL . Q 2 GOL E 1 1143 1143 GOL GOL . R 2 GOL F 1 1143 1143 GOL GOL . S 2 GOL G 1 1143 1143 GOL GOL . T 2 GOL H 1 1143 1143 GOL GOL . U 2 GOL I 1 1143 1143 GOL GOL . V 2 GOL J 1 1143 1143 GOL GOL . W 2 GOL K 1 1143 1143 GOL GOL . X 2 GOL L 1 1143 1143 GOL GOL . Y 3 HOH A 1 2001 2001 HOH HOH . Y 3 HOH A 2 2002 2002 HOH HOH . Y 3 HOH A 3 2003 2003 HOH HOH . Y 3 HOH A 4 2004 2004 HOH HOH . Y 3 HOH A 5 2005 2005 HOH HOH . Y 3 HOH A 6 2006 2006 HOH HOH . Y 3 HOH A 7 2007 2007 HOH HOH . Y 3 HOH A 8 2008 2008 HOH HOH . Y 3 HOH A 9 2009 2009 HOH HOH . Y 3 HOH A 10 2010 2010 HOH HOH . Y 3 HOH A 11 2011 2011 HOH HOH . Y 3 HOH A 12 2012 2012 HOH HOH . Y 3 HOH A 13 2013 2013 HOH HOH . Z 3 HOH B 1 2001 2001 HOH HOH . Z 3 HOH B 2 2002 2002 HOH HOH . Z 3 HOH B 3 2003 2003 HOH HOH . Z 3 HOH B 4 2004 2004 HOH HOH . Z 3 HOH B 5 2005 2005 HOH HOH . Z 3 HOH B 6 2006 2006 HOH HOH . Z 3 HOH B 7 2007 2007 HOH HOH . Z 3 HOH B 8 2008 2008 HOH HOH . Z 3 HOH B 9 2009 2009 HOH HOH . Z 3 HOH B 10 2010 2010 HOH HOH . Z 3 HOH B 11 2011 2011 HOH HOH . Z 3 HOH B 12 2012 2012 HOH HOH . Z 3 HOH B 13 2013 2013 HOH HOH . Z 3 HOH B 14 2014 2014 HOH HOH . Z 3 HOH B 15 2015 2015 HOH HOH . Z 3 HOH B 16 2016 2016 HOH HOH . Z 3 HOH B 17 2017 2017 HOH HOH . Z 3 HOH B 18 2018 2018 HOH HOH . AA 3 HOH C 1 2001 2001 HOH HOH . AA 3 HOH C 2 2002 2002 HOH HOH . AA 3 HOH C 3 2003 2003 HOH HOH . AA 3 HOH C 4 2004 2004 HOH HOH . AA 3 HOH C 5 2005 2005 HOH HOH . AA 3 HOH C 6 2006 2006 HOH HOH . AA 3 HOH C 7 2007 2007 HOH HOH . AA 3 HOH C 8 2008 2008 HOH HOH . AA 3 HOH C 9 2009 2009 HOH HOH . AA 3 HOH C 10 2010 2010 HOH HOH . BA 3 HOH D 1 2001 2001 HOH HOH . BA 3 HOH D 2 2002 2002 HOH HOH . BA 3 HOH D 3 2003 2003 HOH HOH . BA 3 HOH D 4 2004 2004 HOH HOH . BA 3 HOH D 5 2005 2005 HOH HOH . BA 3 HOH D 6 2006 2006 HOH HOH . BA 3 HOH D 7 2007 2007 HOH HOH . BA 3 HOH D 8 2008 2008 HOH HOH . BA 3 HOH D 9 2009 2009 HOH HOH . BA 3 HOH D 10 2010 2010 HOH HOH . BA 3 HOH D 11 2011 2011 HOH HOH . CA 3 HOH E 1 2001 2001 HOH HOH . CA 3 HOH E 2 2002 2002 HOH HOH . CA 3 HOH E 3 2003 2003 HOH HOH . CA 3 HOH E 4 2004 2004 HOH HOH . CA 3 HOH E 5 2005 2005 HOH HOH . CA 3 HOH E 6 2006 2006 HOH HOH . CA 3 HOH E 7 2007 2007 HOH HOH . CA 3 HOH E 8 2008 2008 HOH HOH . CA 3 HOH E 9 2009 2009 HOH HOH . CA 3 HOH E 10 2010 2010 HOH HOH . CA 3 HOH E 11 2011 2011 HOH HOH . CA 3 HOH E 12 2012 2012 HOH HOH . CA 3 HOH E 13 2013 2013 HOH HOH . DA 3 HOH F 1 2001 2001 HOH HOH . DA 3 HOH F 2 2002 2002 HOH HOH . DA 3 HOH F 3 2003 2003 HOH HOH . DA 3 HOH F 4 2004 2004 HOH HOH . DA 3 HOH F 5 2005 2005 HOH HOH . DA 3 HOH F 6 2006 2006 HOH HOH . DA 3 HOH F 7 2007 2007 HOH HOH . DA 3 HOH F 8 2008 2008 HOH HOH . DA 3 HOH F 9 2009 2009 HOH HOH . DA 3 HOH F 10 2010 2010 HOH HOH . DA 3 HOH F 11 2011 2011 HOH HOH . EA 3 HOH G 1 2001 2001 HOH HOH . EA 3 HOH G 2 2002 2002 HOH HOH . EA 3 HOH G 3 2003 2003 HOH HOH . EA 3 HOH G 4 2004 2004 HOH HOH . EA 3 HOH G 5 2005 2005 HOH HOH . EA 3 HOH G 6 2006 2006 HOH HOH . EA 3 HOH G 7 2007 2007 HOH HOH . FA 3 HOH H 1 2001 2001 HOH HOH . FA 3 HOH H 2 2002 2002 HOH HOH . FA 3 HOH H 3 2003 2003 HOH HOH . FA 3 HOH H 4 2004 2004 HOH HOH . FA 3 HOH H 5 2005 2005 HOH HOH . FA 3 HOH H 6 2006 2006 HOH HOH . FA 3 HOH H 7 2007 2007 HOH HOH . FA 3 HOH H 8 2008 2008 HOH HOH . GA 3 HOH I 1 2001 2001 HOH HOH . GA 3 HOH I 2 2002 2002 HOH HOH . GA 3 HOH I 3 2003 2003 HOH HOH . GA 3 HOH I 4 2004 2004 HOH HOH . GA 3 HOH I 5 2005 2005 HOH HOH . GA 3 HOH I 6 2006 2006 HOH HOH . GA 3 HOH I 7 2007 2007 HOH HOH . GA 3 HOH I 8 2008 2008 HOH HOH . GA 3 HOH I 9 2009 2009 HOH HOH . GA 3 HOH I 10 2010 2010 HOH HOH . GA 3 HOH I 11 2011 2011 HOH HOH . HA 3 HOH J 1 2001 2001 HOH HOH . HA 3 HOH J 2 2002 2002 HOH HOH . HA 3 HOH J 3 2003 2003 HOH HOH . HA 3 HOH J 4 2004 2004 HOH HOH . HA 3 HOH J 5 2005 2005 HOH HOH . HA 3 HOH J 6 2006 2006 HOH HOH . HA 3 HOH J 7 2007 2007 HOH HOH . IA 3 HOH K 1 2001 2001 HOH HOH . IA 3 HOH K 2 2002 2002 HOH HOH . IA 3 HOH K 3 2003 2003 HOH HOH . IA 3 HOH K 4 2004 2004 HOH HOH . IA 3 HOH K 5 2005 2005 HOH HOH . IA 3 HOH K 6 2006 2006 HOH HOH . JA 3 HOH L 1 2001 2001 HOH HOH . JA 3 HOH L 2 2002 2002 HOH HOH . JA 3 HOH L 3 2003 2003 HOH HOH . JA 3 HOH L 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . V 2 -36.321 27.649 22.951 1 56.35 ? C1 GOL 1143 J 1 HETATM 2 O O1 GOL . . . V 2 -35.972 29.06 22.995 1 51.96 ? O1 GOL 1143 J 1 HETATM 3 C C2 GOL . . . V 2 -37.171 27.138 21.783 1 56.43 ? C2 GOL 1143 J 1 HETATM 4 O O2 GOL . . . V 2 -36.819 25.866 21.182 1 58.75 ? O2 GOL 1143 J 1 HETATM 5 C C3 GOL . . . V 2 -36.995 28.123 20.658 1 59.89 ? C3 GOL 1143 J 1 HETATM 6 O O3 GOL . . . V 2 -38.226 28.196 19.963 1 61.19 ? O3 GOL 1143 J 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #