data_2UZ4 # _model_server_result.job_id AL9hPBIUDEU5irPt2AQJaQ _model_server_result.datetime_utc '2025-05-22 07:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2uz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1333}' # _entry.id 2UZ4 # _exptl.entry_id 2UZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2UZ4 _cell.length_a 95.177 _cell.length_b 95.177 _cell.length_c 312.355 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2UZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 6 C DG 406 1_555 B P 5CM 7 C 5CM 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale2 B O3' 5CM 7 C 5CM 407 1_555 B P DG 8 C DG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? hydrog WATSON-CRICK hydrog1 B N1 DG 2 C DG 402 1_555 C N3 DC 12 D DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 2 C DG 402 1_555 C O2 DC 12 D DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 2 C DG 402 1_555 C N4 DC 12 D DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 3 C DG 403 1_555 C N3 DC 11 D DC 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 3 C DG 403 1_555 C O2 DC 11 D DC 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 3 C DG 403 1_555 C N4 DC 11 D DC 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DA 4 C DA 404 1_555 C N3 DT 10 D DT 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N6 DA 4 C DA 404 1_555 C O4 DT 10 D DT 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DT 5 C DT 405 1_555 C N1 DA 9 D DA 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 DT 5 C DT 405 1_555 C N6 DA 9 D DA 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DG 6 C DG 406 1_555 C N3 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N2 DG 6 C DG 406 1_555 C O2 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O6 DG 6 C DG 406 1_555 C N4 DC 8 D DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 5CM 7 C 5CM 407 1_555 C N1 DG 7 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 5CM 7 C 5CM 407 1_555 C O6 DG 7 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 5CM 7 C 5CM 407 1_555 C N2 DG 7 D DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DC 9 C DC 409 1_555 C N1 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DC 9 C DC 409 1_555 C O6 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DC 9 C DC 409 1_555 C N2 DG 5 D DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 DT 10 C DT 410 1_555 C N1 DA 4 D DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O4 DT 10 C DT 410 1_555 C N6 DA 4 D DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 DG 11 C DG 411 1_555 C N3 DC 3 D DC 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 DG 11 C DG 411 1_555 C O2 DC 3 D DC 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 DG 11 C DG 411 1_555 C N4 DC 3 D DC 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 DA 12 C DA 412 1_555 C N3 DT 2 D DT 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N6 DA 12 C DA 412 1_555 C O4 DT 2 D DT 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N3 DC 13 C DC 413 1_555 C N1 DG 1 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N4 DC 13 C DC 413 1_555 C O6 DG 1 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B O2 DC 13 C DC 413 1_555 C N2 DG 1 D DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 316 n n C1 C2 GOL sing 317 n n C1 H11 GOL sing 318 n n C1 H12 GOL sing 319 n n O1 HO1 GOL sing 320 n n C2 O2 GOL sing 321 n n C2 C3 GOL sing 322 n n C2 H2 GOL sing 323 n n O2 HO2 GOL sing 324 n n C3 O3 GOL sing 325 n n C3 H31 GOL sing 326 n n C3 H32 GOL sing 327 n n O3 HO3 GOL sing 328 n n # _atom_sites.entry_id 2UZ4 _atom_sites.fract_transf_matrix[1][1] 0.010507 _atom_sites.fract_transf_matrix[1][2] 0.006066 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SAH A 1 1328 1328 SAH SAH . E 5 SO4 A 1 1329 1329 SO4 SO4 . F 5 SO4 A 1 1330 1330 SO4 SO4 . G 5 SO4 A 1 1331 1331 SO4 SO4 . H 5 SO4 A 1 1332 1332 SO4 SO4 . I 6 GOL A 1 1333 1333 GOL GOL . J 6 GOL A 1 1334 1334 GOL GOL . K 7 HOH A 1 2001 2001 HOH HOH . K 7 HOH A 2 2002 2002 HOH HOH . K 7 HOH A 3 2003 2003 HOH HOH . K 7 HOH A 4 2004 2004 HOH HOH . K 7 HOH A 5 2005 2005 HOH HOH . K 7 HOH A 6 2006 2006 HOH HOH . K 7 HOH A 7 2007 2007 HOH HOH . K 7 HOH A 8 2008 2008 HOH HOH . K 7 HOH A 9 2009 2009 HOH HOH . K 7 HOH A 10 2010 2010 HOH HOH . K 7 HOH A 11 2011 2011 HOH HOH . K 7 HOH A 12 2012 2012 HOH HOH . K 7 HOH A 13 2013 2013 HOH HOH . K 7 HOH A 14 2014 2014 HOH HOH . K 7 HOH A 15 2015 2015 HOH HOH . K 7 HOH A 16 2016 2016 HOH HOH . K 7 HOH A 17 2017 2017 HOH HOH . K 7 HOH A 18 2018 2018 HOH HOH . K 7 HOH A 19 2019 2019 HOH HOH . K 7 HOH A 20 2020 2020 HOH HOH . K 7 HOH A 21 2021 2021 HOH HOH . K 7 HOH A 22 2022 2022 HOH HOH . K 7 HOH A 23 2023 2023 HOH HOH . K 7 HOH A 24 2024 2024 HOH HOH . K 7 HOH A 25 2025 2025 HOH HOH . K 7 HOH A 26 2026 2026 HOH HOH . K 7 HOH A 27 2027 2027 HOH HOH . K 7 HOH A 28 2028 2028 HOH HOH . K 7 HOH A 29 2029 2029 HOH HOH . K 7 HOH A 30 2030 2030 HOH HOH . K 7 HOH A 31 2031 2031 HOH HOH . K 7 HOH A 32 2032 2032 HOH HOH . K 7 HOH A 33 2033 2033 HOH HOH . K 7 HOH A 34 2034 2034 HOH HOH . K 7 HOH A 35 2035 2035 HOH HOH . K 7 HOH A 36 2036 2036 HOH HOH . K 7 HOH A 37 2037 2037 HOH HOH . K 7 HOH A 38 2038 2038 HOH HOH . K 7 HOH A 39 2039 2039 HOH HOH . K 7 HOH A 40 2040 2040 HOH HOH . K 7 HOH A 41 2041 2041 HOH HOH . K 7 HOH A 42 2042 2042 HOH HOH . K 7 HOH A 43 2043 2043 HOH HOH . K 7 HOH A 44 2044 2044 HOH HOH . K 7 HOH A 45 2045 2045 HOH HOH . K 7 HOH A 46 2046 2046 HOH HOH . K 7 HOH A 47 2047 2047 HOH HOH . K 7 HOH A 48 2048 2048 HOH HOH . K 7 HOH A 49 2049 2049 HOH HOH . K 7 HOH A 50 2050 2050 HOH HOH . K 7 HOH A 51 2051 2051 HOH HOH . K 7 HOH A 52 2052 2052 HOH HOH . K 7 HOH A 53 2053 2053 HOH HOH . K 7 HOH A 54 2054 2054 HOH HOH . K 7 HOH A 55 2055 2055 HOH HOH . K 7 HOH A 56 2056 2056 HOH HOH . K 7 HOH A 57 2057 2057 HOH HOH . K 7 HOH A 58 2058 2058 HOH HOH . K 7 HOH A 59 2059 2059 HOH HOH . K 7 HOH A 60 2060 2060 HOH HOH . K 7 HOH A 61 2061 2061 HOH HOH . K 7 HOH A 62 2062 2062 HOH HOH . K 7 HOH A 63 2063 2063 HOH HOH . K 7 HOH A 64 2064 2064 HOH HOH . K 7 HOH A 65 2065 2065 HOH HOH . K 7 HOH A 66 2066 2066 HOH HOH . K 7 HOH A 67 2067 2067 HOH HOH . K 7 HOH A 68 2068 2068 HOH HOH . K 7 HOH A 69 2069 2069 HOH HOH . K 7 HOH A 70 2070 2070 HOH HOH . K 7 HOH A 71 2071 2071 HOH HOH . K 7 HOH A 72 2072 2072 HOH HOH . K 7 HOH A 73 2073 2073 HOH HOH . K 7 HOH A 74 2074 2074 HOH HOH . K 7 HOH A 75 2075 2075 HOH HOH . K 7 HOH A 76 2076 2076 HOH HOH . K 7 HOH A 77 2077 2077 HOH HOH . K 7 HOH A 78 2078 2078 HOH HOH . K 7 HOH A 79 2079 2079 HOH HOH . K 7 HOH A 80 2080 2080 HOH HOH . K 7 HOH A 81 2081 2081 HOH HOH . K 7 HOH A 82 2082 2082 HOH HOH . K 7 HOH A 83 2083 2083 HOH HOH . K 7 HOH A 84 2084 2084 HOH HOH . K 7 HOH A 85 2085 2085 HOH HOH . K 7 HOH A 86 2086 2086 HOH HOH . K 7 HOH A 87 2087 2087 HOH HOH . K 7 HOH A 88 2088 2088 HOH HOH . K 7 HOH A 89 2089 2089 HOH HOH . K 7 HOH A 90 2090 2090 HOH HOH . K 7 HOH A 91 2091 2091 HOH HOH . K 7 HOH A 92 2092 2092 HOH HOH . K 7 HOH A 93 2093 2093 HOH HOH . K 7 HOH A 94 2094 2094 HOH HOH . K 7 HOH A 95 2095 2095 HOH HOH . K 7 HOH A 96 2096 2096 HOH HOH . K 7 HOH A 97 2097 2097 HOH HOH . K 7 HOH A 98 2098 2098 HOH HOH . K 7 HOH A 99 2099 2099 HOH HOH . K 7 HOH A 100 2100 2100 HOH HOH . K 7 HOH A 101 2101 2101 HOH HOH . K 7 HOH A 102 2102 2102 HOH HOH . K 7 HOH A 103 2103 2103 HOH HOH . K 7 HOH A 104 2104 2104 HOH HOH . K 7 HOH A 105 2105 2105 HOH HOH . K 7 HOH A 106 2106 2106 HOH HOH . K 7 HOH A 107 2107 2107 HOH HOH . K 7 HOH A 108 2108 2108 HOH HOH . K 7 HOH A 109 2109 2109 HOH HOH . K 7 HOH A 110 2110 2110 HOH HOH . K 7 HOH A 111 2111 2111 HOH HOH . K 7 HOH A 112 2112 2112 HOH HOH . K 7 HOH A 113 2113 2113 HOH HOH . K 7 HOH A 114 2114 2114 HOH HOH . K 7 HOH A 115 2115 2115 HOH HOH . K 7 HOH A 116 2116 2116 HOH HOH . K 7 HOH A 117 2117 2117 HOH HOH . K 7 HOH A 118 2118 2118 HOH HOH . K 7 HOH A 119 2119 2119 HOH HOH . K 7 HOH A 120 2120 2120 HOH HOH . K 7 HOH A 121 2121 2121 HOH HOH . K 7 HOH A 122 2122 2122 HOH HOH . K 7 HOH A 123 2123 2123 HOH HOH . K 7 HOH A 124 2124 2124 HOH HOH . K 7 HOH A 125 2125 2125 HOH HOH . K 7 HOH A 126 2126 2126 HOH HOH . K 7 HOH A 127 2127 2127 HOH HOH . L 7 HOH C 1 2001 2001 HOH HOH . L 7 HOH C 2 2002 2002 HOH HOH . L 7 HOH C 3 2003 2003 HOH HOH . L 7 HOH C 4 2004 2004 HOH HOH . L 7 HOH C 5 2005 2005 HOH HOH . L 7 HOH C 6 2006 2006 HOH HOH . L 7 HOH C 7 2007 2007 HOH HOH . M 7 HOH D 1 2001 2001 HOH HOH . M 7 HOH D 2 2002 2002 HOH HOH . M 7 HOH D 3 2003 2003 HOH HOH . M 7 HOH D 4 2004 2004 HOH HOH . M 7 HOH D 5 2005 2005 HOH HOH . M 7 HOH D 6 2006 2006 HOH HOH . M 7 HOH D 7 2007 2007 HOH HOH . M 7 HOH D 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 6 -18.637 47.946 67.663 1 35.65 ? C1 GOL 1333 A 1 HETATM 2 O O1 GOL . . . I 6 -18.252 46.803 66.878 1 36.36 ? O1 GOL 1333 A 1 HETATM 3 C C2 GOL . . . I 6 -18.124 47.745 69.089 1 34.78 ? C2 GOL 1333 A 1 HETATM 4 O O2 GOL . . . I 6 -17.433 48.929 69.452 1 36.21 ? O2 GOL 1333 A 1 HETATM 5 C C3 GOL . . . I 6 -19.213 47.452 70.034 1 33.32 ? C3 GOL 1333 A 1 HETATM 6 O O3 GOL . . . I 6 -19.907 46.222 69.578 1 30.81 ? O3 GOL 1333 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #