data_2V01 # _model_server_result.job_id '_rOOp3GEmh3vaobQpkXUqA' _model_server_result.datetime_utc '2024-11-25 19:04:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1148}' # _entry.id 2V01 # _exptl.entry_id 2V01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.2 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LEAD (II) ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.57 _cell.angle_beta 87.03 _cell.angle_gamma 82.95 _cell.entry_id 2V01 _cell.length_a 24.58 _cell.length_b 29.95 _cell.length_c 53.61 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 15 A GLU 14 1_555 H PB PB . A PB 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc2 A OD1 ASP 21 A ASP 20 1_555 C PB PB . A PB 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 A OD2 ASP 23 A ASP 22 1_555 C PB PB . A PB 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc4 A OD1 ASP 23 A ASP 22 1_555 C PB PB . A PB 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 A OD1 ASP 25 A ASP 24 1_555 C PB PB . A PB 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc6 A O THR 27 A THR 26 1_555 C PB PB . A PB 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc7 A OE1 GLU 32 A GLU 31 1_555 C PB PB . A PB 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc8 A OE2 GLU 32 A GLU 31 1_555 C PB PB . A PB 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc9 A OD1 ASN 43 A ASN 42 1_565 I PB PB . A PB 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc10 A OE1 GLU 48 A GLU 47 1_565 G PB PB . A PB 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc11 A OE2 GLU 48 A GLU 47 1_565 G PB PB . A PB 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc12 A OD1 ASP 57 A ASP 56 1_555 D PB PB . A PB 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc13 A OD1 ASP 59 A ASP 58 1_555 D PB PB . A PB 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc14 A OD2 ASP 59 A ASP 58 1_555 D PB PB . A PB 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc15 A OD2 ASP 59 A ASP 58 1_555 I PB PB . A PB 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc16 A OD1 ASN 61 A ASN 60 1_555 D PB PB . A PB 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc17 A O THR 63 A THR 62 1_555 D PB PB . A PB 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc18 A OD2 ASP 65 A ASP 64 1_555 I PB PB . A PB 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc19 A OE1 GLU 68 A GLU 67 1_555 D PB PB . A PB 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc20 A OE2 GLU 68 A GLU 67 1_555 D PB PB . A PB 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc21 A NH1 ARG 75 A ARG 74 1_655 H PB PB . A PB 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc22 A OD2 ASP 79 A ASP 78 1_555 J CA CA . A CA 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc23 A OD1 ASP 79 A ASP 78 1_555 J CA CA . A CA 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc24 A OD1 ASP 94 A ASP 93 1_555 E PB PB . A PB 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc25 A OD1 ASP 96 A ASP 95 1_555 E PB PB . A PB 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc26 A OD1 ASN 98 A ASN 97 1_555 E PB PB . A PB 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc27 A O TYR 100 A TYR 99 1_555 E PB PB . A PB 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc28 A OE1 GLU 105 A GLU 104 1_555 E PB PB . A PB 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc29 A OE2 GLU 105 A GLU 104 1_555 E PB PB . A PB 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc30 A OD2 ASP 119 A ASP 118 1_555 B PB PB . A PB 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc31 A OD1 ASP 119 A ASP 118 1_555 B PB PB . A PB 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc32 A OD1 ASP 123 A ASP 122 1_555 B PB PB . A PB 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc33 A OD2 ASP 123 A ASP 122 1_555 B PB PB . A PB 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc34 A OD1 ASP 130 A ASP 129 1_555 F PB PB . A PB 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc35 A OD2 ASP 132 A ASP 131 1_555 F PB PB . A PB 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc36 A OD2 ASP 134 A ASP 133 1_555 F PB PB . A PB 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc37 A O GLN 136 A GLN 135 1_555 F PB PB . A PB 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc38 A OE1 GLU 141 A GLU 140 1_555 F PB PB . A PB 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc39 A OE2 GLU 141 A GLU 140 1_555 F PB PB . A PB 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc40 B PB PB . A PB 1146 1_555 K O HOH . A HOH 2048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc41 E PB PB . A PB 1149 1_555 K O HOH . A HOH 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc42 I PB PB . A PB 1153 1_555 K O HOH . A HOH 2028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc43 J CA CA . A CA 1154 1_555 K O HOH . A HOH 2030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'Pb 2' _chem_comp.formula_weight 207.2 _chem_comp.id PB _chem_comp.mon_nstd_flag . _chem_comp.name 'LEAD (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2V01 _atom_sites.fract_transf_matrix[1][1] 0.040683 _atom_sites.fract_transf_matrix[1][2] -0.005031 _atom_sites.fract_transf_matrix[1][3] -0.002017 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033643 _atom_sites.fract_transf_matrix[2][3] -0.000631 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PB A 1 1146 1146 PB PB . C 2 PB A 1 1147 1147 PB PB . D 2 PB A 1 1148 1148 PB PB . E 2 PB A 1 1149 1149 PB PB . F 2 PB A 1 1150 1150 PB PB . G 2 PB A 1 1151 1151 PB PB . H 2 PB A 1 1152 1152 PB PB . I 2 PB A 1 1153 1153 PB PB . J 3 CA A 1 1154 1154 CA CA . K 4 HOH A 1 2001 2001 HOH HOH . K 4 HOH A 2 2002 2002 HOH HOH . K 4 HOH A 3 2003 2003 HOH HOH . K 4 HOH A 4 2004 2004 HOH HOH . K 4 HOH A 5 2005 2005 HOH HOH . K 4 HOH A 6 2006 2006 HOH HOH . K 4 HOH A 7 2007 2007 HOH HOH . K 4 HOH A 8 2008 2008 HOH HOH . K 4 HOH A 9 2009 2009 HOH HOH . K 4 HOH A 10 2010 2010 HOH HOH . K 4 HOH A 11 2011 2011 HOH HOH . K 4 HOH A 12 2012 2012 HOH HOH . K 4 HOH A 13 2013 2013 HOH HOH . K 4 HOH A 14 2014 2014 HOH HOH . K 4 HOH A 15 2015 2015 HOH HOH . K 4 HOH A 16 2016 2016 HOH HOH . K 4 HOH A 17 2017 2017 HOH HOH . K 4 HOH A 18 2018 2018 HOH HOH . K 4 HOH A 19 2019 2019 HOH HOH . K 4 HOH A 20 2020 2020 HOH HOH . K 4 HOH A 21 2021 2021 HOH HOH . K 4 HOH A 22 2022 2022 HOH HOH . K 4 HOH A 23 2023 2023 HOH HOH . K 4 HOH A 24 2024 2024 HOH HOH . K 4 HOH A 25 2025 2025 HOH HOH . K 4 HOH A 26 2026 2026 HOH HOH . K 4 HOH A 27 2027 2027 HOH HOH . K 4 HOH A 28 2028 2028 HOH HOH . K 4 HOH A 29 2029 2029 HOH HOH . K 4 HOH A 30 2030 2030 HOH HOH . K 4 HOH A 31 2031 2031 HOH HOH . K 4 HOH A 32 2032 2032 HOH HOH . K 4 HOH A 33 2033 2033 HOH HOH . K 4 HOH A 34 2034 2034 HOH HOH . K 4 HOH A 35 2035 2035 HOH HOH . K 4 HOH A 36 2036 2036 HOH HOH . K 4 HOH A 37 2037 2037 HOH HOH . K 4 HOH A 38 2038 2038 HOH HOH . K 4 HOH A 39 2039 2039 HOH HOH . K 4 HOH A 40 2040 2040 HOH HOH . K 4 HOH A 41 2041 2041 HOH HOH . K 4 HOH A 42 2042 2042 HOH HOH . K 4 HOH A 43 2043 2043 HOH HOH . K 4 HOH A 44 2044 2044 HOH HOH . K 4 HOH A 45 2045 2045 HOH HOH . K 4 HOH A 46 2046 2046 HOH HOH . K 4 HOH A 47 2047 2047 HOH HOH . K 4 HOH A 48 2048 2048 HOH HOH . K 4 HOH A 49 2049 2049 HOH HOH . K 4 HOH A 50 2050 2050 HOH HOH . K 4 HOH A 51 2051 2051 HOH HOH . K 4 HOH A 52 2052 2052 HOH HOH . K 4 HOH A 53 2053 2053 HOH HOH . K 4 HOH A 54 2054 2054 HOH HOH . K 4 HOH A 55 2055 2055 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PB _atom_site.label_atom_id PB _atom_site.label_comp_id PB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.556 _atom_site.Cartn_y 15.823 _atom_site.Cartn_z -18.117 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PB _atom_site.auth_comp_id PB _atom_site.auth_seq_id 1148 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #