data_2V02 # _model_server_result.job_id nakRvx8v1htLOvgcHoeZLA _model_server_result.datetime_utc '2024-12-26 22:58:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1149}' # _entry.id 2V02 # _exptl.entry_id 2V02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.84 _cell.angle_beta 85.68 _cell.angle_gamma 82.8 _cell.entry_id 2V02 _cell.length_a 24.41 _cell.length_b 29.32 _cell.length_c 53.32 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 A ASP 20 1_555 B CA CA . A CA 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 A OD1 ASP 23 A ASP 22 1_555 B CA CA . A CA 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 A OD1 ASP 25 A ASP 24 1_555 B CA CA . A CA 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc4 A O THR 27 A THR 26 1_555 B CA CA . A CA 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 B CA CA . A CA 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 B CA CA . A CA 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc7 A O ASN 43 A ASN 42 1_565 F BA BA . A BA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.303 ? metalc ? metalc8 A OD1 ASP 57 A ASP 56 1_555 C BA BA . A BA 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc9 A OD2 ASP 59 A ASP 58 1_555 C BA BA . A BA 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.435 ? metalc ? metalc10 A OD1 ASP 59 A ASP 58 1_555 C BA BA . A BA 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc11 A OD2 ASP 59 A ASP 58 1_555 F BA BA . A BA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc12 A OD1 ASN 61 A ASN 60 1_555 C BA BA . A BA 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc13 A O THR 63 A THR 62 1_555 C BA BA . A BA 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc14 A OD2 ASP 65 A ASP 64 1_555 F BA BA . A BA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc15 A OE1 GLU 68 A GLU 67 1_555 C BA BA . A BA 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc16 A OE2 GLU 68 A GLU 67 1_555 C BA BA . A BA 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc17 A OD1 ASP 94 A ASP 93 1_555 E CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc18 A OD1 ASP 96 A ASP 95 1_555 E CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc19 A OD1 ASN 98 A ASN 97 1_555 E CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc20 A O TYR 100 A TYR 99 1_555 E CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc21 A OE1 GLU 105 A GLU 104 1_555 E CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc22 A OE2 GLU 105 A GLU 104 1_555 E CA CA . A CA 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc23 A OD1 ASP 130 A ASP 129 1_555 D CA CA . A CA 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc24 A OD2 ASP 132 A ASP 131 1_555 D CA CA . A CA 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc25 A OD1 ASP 134 A ASP 133 1_555 D CA CA . A CA 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc26 A O GLN 136 A GLN 135 1_555 D CA CA . A CA 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc27 A OE1 GLU 141 A GLU 140 1_555 D CA CA . A CA 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc28 A OE2 GLU 141 A GLU 140 1_555 D CA CA . A CA 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc29 F BA BA . A BA 1150 1_555 G O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.332 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2V02 _atom_sites.fract_transf_matrix[1][1] 0.040967 _atom_sites.fract_transf_matrix[1][2] -0.005175 _atom_sites.fract_transf_matrix[1][3] -0.00313 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034377 _atom_sites.fract_transf_matrix[2][3] 0.000231 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1146 1146 CA CA . C 3 BA A 1 1147 1147 BA BA . D 2 CA A 1 1148 1148 CA CA . E 2 CA A 1 1149 1149 CA CA . F 3 BA A 1 1150 1150 BA BA . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -2.912 _atom_site.Cartn_y -16.496 _atom_site.Cartn_z 13.883 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1149 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #