data_2V0M
#
_model_server_result.job_id            3J4ucI7VlP1dtqE_1n5trA 
_model_server_result.datetime_utc      '2024-11-25 08:01:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v0m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1499}' 
#
_entry.id    2V0M 
#
_exptl.entry_id    2V0M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.8 
_cell.angle_gamma         90 
_cell.entry_id            2V0M 
_cell.length_a            228.942 
_cell.length_b            66.363 
_cell.length_c            146.419 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V0M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PQS monomeric 1 author_and_software_defined_assembly 3 
PQS monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G 1 1 
B,H,I,J 2 1 
C,K,L,M 3 1 
D,N,O,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 420 A CYS 442 1_555 E FE HEM . A HEM 1499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc2 E FE HEM . A HEM 1499 1_555 F N2 KLN . A KLN 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc3 B SG CYS 420 B CYS 442 1_555 H FE HEM . B HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc4 H FE HEM . B HEM 1497 1_555 I N2 KLN . B KLN 1498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc5 C SG CYS 420 C CYS 442 1_555 K FE HEM . C HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc6 K FE HEM . C HEM 1497 1_555 L N2 KLN . C KLN 1498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc7 D SG CYS 420 D CYS 442 1_555 N FE HEM . D HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc8 N FE HEM . D HEM 1497 1_555 O N2 KLN . D KLN 1498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     2V0M 
_atom_sites.fract_transf_matrix[1][1]    0.004368 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000992 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015069 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007004 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 1499 1499 HEM HEM . 
F 3 KLN A 1 1500 1500 KLN KLN . 
G 3 KLN A 1 1501 1501 KLN KLN . 
H 2 HEM B 1 1497 1497 HEM HEM . 
I 3 KLN B 1 1498 1498 KLN KLN . 
J 3 KLN B 1 1499 1499 KLN KLN . 
K 2 HEM C 1 1497 1497 HEM HEM . 
L 3 KLN C 1 1498 1498 KLN KLN . 
M 3 KLN C 1 1499 1499 KLN KLN . 
N 2 HEM D 1 1497 1497 HEM HEM . 
O 3 KLN D 1 1498 1498 KLN KLN . 
P 3 KLN D 1 1499 1499 KLN KLN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . E 2 21.807 10.049 67.166 1 15.28 ? CHA HEM 1499 A 1 
HETATM 2 C CHB HEM . . . E 2 19.865 5.869 68.714 1 15.74 ? CHB HEM 1499 A 1 
HETATM 3 C CHC HEM . . . E 2 16.359 8.359 70.971 1 15.55 ? CHC HEM 1499 A 1 
HETATM 4 C CHD HEM . . . E 2 18.235 12.544 69.379 1 15.55 ? CHD HEM 1499 A 1 
HETATM 5 C C1A HEM . . . E 2 21.597 8.704 67.385 1 15.29 ? C1A HEM 1499 A 1 
HETATM 6 C C2A HEM . . . E 2 22.437 7.619 66.907 1 14.76 ? C2A HEM 1499 A 1 
HETATM 7 C C3A HEM . . . E 2 21.913 6.458 67.34 1 14.71 ? C3A HEM 1499 A 1 
HETATM 8 C C4A HEM . . . E 2 20.715 6.771 68.098 1 15.54 ? C4A HEM 1499 A 1 
HETATM 9 C CMA HEM . . . E 2 22.466 5.037 67.083 1 14.23 ? CMA HEM 1499 A 1 
HETATM 10 C CAA HEM . . . E 2 23.719 7.812 66.07 1 13.32 ? CAA HEM 1499 A 1 
HETATM 11 C CBA HEM . . . E 2 24.864 7.932 67.073 1 13.89 ? CBA HEM 1499 A 1 
HETATM 12 C CGA HEM . . . E 2 26.199 7.755 66.408 1 14.21 ? CGA HEM 1499 A 1 
HETATM 13 O O1A HEM . . . E 2 26.317 8.124 65.213 1 16.12 ? O1A HEM 1499 A 1 
HETATM 14 O O2A HEM . . . E 2 27.158 7.265 67.056 1 13.43 ? O2A HEM 1499 A 1 
HETATM 15 C C1B HEM . . . E 2 18.724 6.163 69.434 1 15.7 ? C1B HEM 1499 A 1 
HETATM 16 C C2B HEM . . . E 2 17.793 5.213 70.013 1 15.76 ? C2B HEM 1499 A 1 
HETATM 17 C C3B HEM . . . E 2 16.823 5.902 70.636 1 16.66 ? C3B HEM 1499 A 1 
HETATM 18 C C4B HEM . . . E 2 17.108 7.317 70.475 1 16.32 ? C4B HEM 1499 A 1 
HETATM 19 C CMB HEM . . . E 2 17.919 3.682 69.916 1 15.69 ? CMB HEM 1499 A 1 
HETATM 20 C CAB HEM . . . E 2 15.602 5.329 71.394 1 16.91 ? CAB HEM 1499 A 1 
HETATM 21 C CBB HEM . . . E 2 15.763 4.433 72.373 1 17.96 ? CBB HEM 1499 A 1 
HETATM 22 C C1C HEM . . . E 2 16.584 9.71 70.788 1 15.95 ? C1C HEM 1499 A 1 
HETATM 23 C C2C HEM . . . E 2 15.854 10.806 71.422 1 15.88 ? C2C HEM 1499 A 1 
HETATM 24 C C3C HEM . . . E 2 16.379 11.963 70.976 1 15.67 ? C3C HEM 1499 A 1 
HETATM 25 C C4C HEM . . . E 2 17.453 11.638 70.054 1 15.58 ? C4C HEM 1499 A 1 
HETATM 26 C CMC HEM . . . E 2 14.685 10.641 72.424 1 14.45 ? CMC HEM 1499 A 1 
HETATM 27 C CAC HEM . . . E 2 15.957 13.406 71.345 1 15.35 ? CAC HEM 1499 A 1 
HETATM 28 C CBC HEM . . . E 2 15.063 13.675 72.301 1 15.05 ? CBC HEM 1499 A 1 
HETATM 29 C C1D HEM . . . E 2 19.373 12.28 68.642 1 15.93 ? C1D HEM 1499 A 1 
HETATM 30 C C2D HEM . . . E 2 20.217 13.285 68.031 1 15.61 ? C2D HEM 1499 A 1 
HETATM 31 C C3D HEM . . . E 2 21.343 12.512 67.34 1 16.02 ? C3D HEM 1499 A 1 
HETATM 32 C C4D HEM . . . E 2 21.059 11.113 67.609 1 15.35 ? C4D HEM 1499 A 1 
HETATM 33 C CMD HEM . . . E 2 20.028 14.815 68.065 1 15.59 ? CMD HEM 1499 A 1 
HETATM 34 C CAD HEM . . . E 2 22.521 13.116 66.534 1 16.39 ? CAD HEM 1499 A 1 
HETATM 35 C CBD HEM . . . E 2 23.671 13.451 67.486 1 18.38 ? CBD HEM 1499 A 1 
HETATM 36 C CGD HEM . . . E 2 24.705 14.345 66.832 1 19.94 ? CGD HEM 1499 A 1 
HETATM 37 O O1D HEM . . . E 2 25.173 15.317 67.497 1 19.97 ? O1D HEM 1499 A 1 
HETATM 38 O O2D HEM . . . E 2 25.073 14.093 65.649 1 20.07 ? O2D HEM 1499 A 1 
HETATM 39 N NA HEM . . . E 2 20.562 8.147 68.099 1 15.48 ? NA HEM 1499 A 1 
HETATM 40 N NB HEM . . . E 2 18.27 7.432 69.731 1 15.87 ? NB HEM 1499 A 1 
HETATM 41 N NC HEM . . . E 2 17.551 10.261 69.965 1 15.86 ? NC HEM 1499 A 1 
HETATM 42 N ND HEM . . . E 2 19.905 11.02 68.372 1 15.62 ? ND HEM 1499 A 1 
HETATM 43 FE FE HEM . . . E 2 19.127 9.177 69.062 1 16.03 ? FE HEM 1499 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#