data_2V0M # _model_server_result.job_id d1zlKLGVAb6lstccu-TUbQ _model_server_result.datetime_utc '2024-10-11 02:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1501}' # _entry.id 2V0M # _exptl.entry_id 2V0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.431 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ACETYL-4-(4-{[(2S,4R)-2-(2,4-DICHLOROPHENYL)-2-(1H-IMIDAZOL-1-YLMETHYL)-1,3-DIOXOLAN-4-YL]METHOXY}PHENYL)PIPERAZINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.8 _cell.angle_gamma 90 _cell.entry_id 2V0M _cell.length_a 228.942 _cell.length_b 66.363 _cell.length_c 146.419 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PQS monomeric 1 author_and_software_defined_assembly 3 PQS monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H,I,J 2 1 C,K,L,M 3 1 D,N,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 420 A CYS 442 1_555 E FE HEM . A HEM 1499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 E FE HEM . A HEM 1499 1_555 F N2 KLN . A KLN 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 B SG CYS 420 B CYS 442 1_555 H FE HEM . B HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 H FE HEM . B HEM 1497 1_555 I N2 KLN . B KLN 1498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc5 C SG CYS 420 C CYS 442 1_555 K FE HEM . C HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 K FE HEM . C HEM 1497 1_555 L N2 KLN . C KLN 1498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc7 D SG CYS 420 D CYS 442 1_555 N FE HEM . D HEM 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc8 N FE HEM . D HEM 1497 1_555 O N2 KLN . D KLN 1498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? # _chem_comp.formula 'C26 H28 Cl2 N4 O4' _chem_comp.formula_weight 531.431 _chem_comp.id KLN _chem_comp.mon_nstd_flag . _chem_comp.name 1-ACETYL-4-(4-{[(2S,4R)-2-(2,4-DICHLOROPHENYL)-2-(1H-IMIDAZOL-1-YLMETHYL)-1,3-DIOXOLAN-4-YL]METHOXY}PHENYL)PIPERAZINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 KLN sing 253 n y C1 N2 KLN doub 254 n y N2 C2 KLN sing 255 n y N1 C3 KLN sing 256 n y C2 C3 KLN doub 257 n y N1 C4 KLN sing 258 n n C4 C5 KLN sing 259 n n C5 O1 KLN sing 260 n n O1 C6 KLN sing 261 n n C6 C7 KLN sing 262 n n C5 O2 KLN sing 263 n n C7 O2 KLN sing 264 n n C5 C8 KLN sing 265 n n C8 C9 KLN sing 266 n y C9 C10 KLN doub 267 n y C10 C11 KLN sing 268 n y C11 C12 KLN doub 269 n y C8 C13 KLN doub 270 n y C12 C13 KLN sing 271 n y C11 CL1 KLN sing 272 n n C6 C14 KLN sing 273 n n C14 O3 KLN sing 274 n n O3 C15 KLN sing 275 n n C15 C16 KLN doub 276 n y C17 C16 KLN sing 277 n y C18 C17 KLN doub 278 n y C19 C18 KLN sing 279 n y C20 C19 KLN doub 280 n y C15 C20 KLN sing 281 n y C18 N3 KLN sing 282 n n N3 C21 KLN sing 283 n n C21 C22 KLN sing 284 n n C22 N4 KLN sing 285 n n N4 C23 KLN sing 286 n n N3 C24 KLN sing 287 n n C23 C24 KLN sing 288 n n N4 C25 KLN sing 289 n n C25 O4 KLN doub 290 n n C25 C26 KLN sing 291 n n C9 CL2 KLN sing 292 n n C1 H1 KLN sing 293 n n C3 H3 KLN sing 294 n n C4 H4C1 KLN sing 295 n n C4 H4C2 KLN sing 296 n n C2 H2 KLN sing 297 n n C6 H6 KLN sing 298 n n C7 H7C1 KLN sing 299 n n C7 H7C2 KLN sing 300 n n C14 H141 KLN sing 301 n n C14 H142 KLN sing 302 n n C13 H13 KLN sing 303 n n C10 H10 KLN sing 304 n n C12 H12 KLN sing 305 n n C20 H20 KLN sing 306 n n C16 H16 KLN sing 307 n n C19 H19 KLN sing 308 n n C17 H17 KLN sing 309 n n C21 H211 KLN sing 310 n n C21 H212 KLN sing 311 n n C24 H241 KLN sing 312 n n C24 H242 KLN sing 313 n n C22 H221 KLN sing 314 n n C22 H222 KLN sing 315 n n C23 H231 KLN sing 316 n n C23 H232 KLN sing 317 n n C26 H261 KLN sing 318 n n C26 H262 KLN sing 319 n n C26 H263 KLN sing 320 n n # _atom_sites.entry_id 2V0M _atom_sites.fract_transf_matrix[1][1] 0.004368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 1499 1499 HEM HEM . F 3 KLN A 1 1500 1500 KLN KLN . G 3 KLN A 1 1501 1501 KLN KLN . H 2 HEM B 1 1497 1497 HEM HEM . I 3 KLN B 1 1498 1498 KLN KLN . J 3 KLN B 1 1499 1499 KLN KLN . K 2 HEM C 1 1497 1497 HEM HEM . L 3 KLN C 1 1498 1498 KLN KLN . M 3 KLN C 1 1499 1499 KLN KLN . N 2 HEM D 1 1497 1497 HEM HEM . O 3 KLN D 1 1498 1498 KLN KLN . P 3 KLN D 1 1499 1499 KLN KLN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KLN . . . G 3 21.823 6.224 51.468 1 77.63 ? N1 KLN 1501 A 1 HETATM 2 C C1 KLN . . . G 3 22.742 5.56 52.206 1 77.71 ? C1 KLN 1501 A 1 HETATM 3 N N2 KLN . . . G 3 23.205 6.369 53.12 1 77.81 ? N2 KLN 1501 A 1 HETATM 4 C C2 KLN . . . G 3 22.609 7.566 52.998 1 77.82 ? C2 KLN 1501 A 1 HETATM 5 C C3 KLN . . . G 3 21.741 7.496 51.972 1 77.8 ? C3 KLN 1501 A 1 HETATM 6 C C4 KLN . . . G 3 21.041 5.681 50.35 1 77.15 ? C4 KLN 1501 A 1 HETATM 7 C C5 KLN . . . G 3 19.707 5.13 50.89 1 77 ? C5 KLN 1501 A 1 HETATM 8 O O1 KLN . . . G 3 19.027 6.172 51.607 1 75.6 ? O1 KLN 1501 A 1 HETATM 9 C C6 KLN . . . G 3 18.582 5.566 52.841 1 73.91 ? C6 KLN 1501 A 1 HETATM 10 C C7 KLN . . . G 3 19.751 4.612 53.154 1 74.96 ? C7 KLN 1501 A 1 HETATM 11 O O2 KLN . . . G 3 19.974 4.065 51.823 1 76.18 ? O2 KLN 1501 A 1 HETATM 12 C C8 KLN . . . G 3 18.824 4.63 49.752 1 77.58 ? C8 KLN 1501 A 1 HETATM 13 C C9 KLN . . . G 3 17.438 4.451 49.888 1 77.96 ? C9 KLN 1501 A 1 HETATM 14 C C10 KLN . . . G 3 16.684 4.001 48.825 1 78.01 ? C10 KLN 1501 A 1 HETATM 15 C C11 KLN . . . G 3 17.282 3.719 47.619 1 77.94 ? C11 KLN 1501 A 1 HETATM 16 C C12 KLN . . . G 3 18.65 3.884 47.456 1 77.74 ? C12 KLN 1501 A 1 HETATM 17 C C13 KLN . . . G 3 19.411 4.337 48.522 1 77.83 ? C13 KLN 1501 A 1 HETATM 18 CL CL1 KLN . . . G 3 16.263 3.159 46.339 1 78.55 ? CL1 KLN 1501 A 1 HETATM 19 C C14 KLN . . . G 3 18.317 6.621 53.911 1 71.41 ? C14 KLN 1501 A 1 HETATM 20 O O3 KLN . . . G 3 18.857 6.256 55.183 1 67.83 ? O3 KLN 1501 A 1 HETATM 21 C C15 KLN . . . G 3 18.838 7.423 55.878 1 67.24 ? C15 KLN 1501 A 1 HETATM 22 C C16 KLN . . . G 3 19.622 8.486 55.438 1 67.06 ? C16 KLN 1501 A 1 HETATM 23 C C17 KLN . . . G 3 19.602 9.682 56.127 1 66.77 ? C17 KLN 1501 A 1 HETATM 24 C C18 KLN . . . G 3 18.805 9.825 57.258 1 66.36 ? C18 KLN 1501 A 1 HETATM 25 C C19 KLN . . . G 3 18.012 8.762 57.699 1 66.53 ? C19 KLN 1501 A 1 HETATM 26 C C20 KLN . . . G 3 18.031 7.562 57.007 1 66.96 ? C20 KLN 1501 A 1 HETATM 27 N N3 KLN . . . G 3 18.837 11.067 57.897 1 65.86 ? N3 KLN 1501 A 1 HETATM 28 C C21 KLN . . . G 3 17.568 11.764 57.687 1 64.98 ? C21 KLN 1501 A 1 HETATM 29 C C22 KLN . . . G 3 17.846 13.23 58.022 1 64.6 ? C22 KLN 1501 A 1 HETATM 30 N N4 KLN . . . G 3 18.395 13.342 59.392 1 63.9 ? N4 KLN 1501 A 1 HETATM 31 C C23 KLN . . . G 3 19.406 12.364 59.86 1 64.24 ? C23 KLN 1501 A 1 HETATM 32 C C24 KLN . . . G 3 19.074 10.954 59.337 1 64.89 ? C24 KLN 1501 A 1 HETATM 33 C C25 KLN . . . G 3 17.981 14.343 60.2 1 63.66 ? C25 KLN 1501 A 1 HETATM 34 O O4 KLN . . . G 3 18.426 14.441 61.322 1 63.34 ? O4 KLN 1501 A 1 HETATM 35 C C26 KLN . . . G 3 16.956 15.349 59.728 1 63.41 ? C26 KLN 1501 A 1 HETATM 36 CL CL2 KLN . . . G 3 16.534 4.759 51.337 1 78.14 ? CL2 KLN 1501 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #