data_2V10 # _model_server_result.job_id 1EHrOfauEmicFoJDArdV1w _model_server_result.datetime_utc '2024-11-30 06:09:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1341}' # _entry.id 2V10 # _exptl.entry_id 2V10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.68 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,4S,5S,7S)-5-AMINO-N-BUTYL-4-HYDROXY-7-[4-METHOXY-3-(3-METHOXYPROPOXY)BENZYL]-2,8-DIMETHYLNONANAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V10 _cell.length_a 143 _cell.length_b 143 _cell.length_c 143 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 C CYS 51 1_555 A SG CYS 58 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf2 A SG CYS 217 C CYS 217 1_555 A SG CYS 221 C CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf3 A SG CYS 259 C CYS 259 1_555 A SG CYS 296 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 B SG CYS 51 O CYS 51 1_555 B SG CYS 58 O CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? disulf ? disulf5 B SG CYS 217 O CYS 217 1_555 B SG CYS 221 O CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 259 O CYS 259 1_555 B SG CYS 296 O CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C27 H48 N2 O5' _chem_comp.formula_weight 480.68 _chem_comp.id C61 _chem_comp.mon_nstd_flag . _chem_comp.name (2R,4S,5S,7S)-5-AMINO-N-BUTYL-4-HYDROXY-7-[4-METHOXY-3-(3-METHOXYPROPOXY)BENZYL]-2,8-DIMETHYLNONANAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O3 C61 sing 70 n n C2 H2C1 C61 sing 71 n n C2 H2C2 C61 sing 72 n n C2 H2C3 C61 sing 73 n n O3 C4 C61 sing 74 n n C4 C5 C61 sing 75 n n C4 H4C1 C61 sing 76 n n C4 H4C2 C61 sing 77 n n C5 C6 C61 sing 78 n n C5 H5C1 C61 sing 79 n n C5 H5C2 C61 sing 80 n n C6 O7 C61 sing 81 n n C6 H6C1 C61 sing 82 n n C6 H6C2 C61 sing 83 n n O7 C11 C61 sing 84 n n O8 C9 C61 sing 85 n n O8 C12 C61 sing 86 n n C9 H9C1 C61 sing 87 n n C9 H9C2 C61 sing 88 n n C9 H9C3 C61 sing 89 n n C10 C11 C61 doub 90 n y C10 C15 C61 sing 91 n y C10 H10 C61 sing 92 n n C11 C12 C61 sing 93 n y C12 C13 C61 doub 94 n y C13 C14 C61 sing 95 n y C13 H13 C61 sing 96 n n C14 C15 C61 doub 97 n y C14 H14 C61 sing 98 n n C15 C16 C61 sing 99 n n C16 C17 C61 sing 100 n n C16 H161 C61 sing 101 n n C16 H162 C61 sing 102 n n C17 C18 C61 sing 103 n n C17 C21 C61 sing 104 n n C17 H17 C61 sing 105 n n C18 C19 C61 sing 106 n n C18 C20 C61 sing 107 n n C18 H18 C61 sing 108 n n C19 H191 C61 sing 109 n n C19 H192 C61 sing 110 n n C19 H193 C61 sing 111 n n C20 H201 C61 sing 112 n n C20 H202 C61 sing 113 n n C20 H203 C61 sing 114 n n C21 C22 C61 sing 115 n n C21 H211 C61 sing 116 n n C21 H212 C61 sing 117 n n C22 N23 C61 sing 118 n n C22 C24 C61 sing 119 n n C22 H22 C61 sing 120 n n N23 H231 C61 sing 121 n n N23 H232 C61 sing 122 n n C24 O25 C61 sing 123 n n C24 C26 C61 sing 124 n n C24 H24 C61 sing 125 n n O25 H25 C61 sing 126 n n C26 C27 C61 sing 127 n n C26 H261 C61 sing 128 n n C26 H262 C61 sing 129 n n C27 C28 C61 sing 130 n n C27 C29 C61 sing 131 n n C27 H27 C61 sing 132 n n C28 H281 C61 sing 133 n n C28 H282 C61 sing 134 n n C28 H283 C61 sing 135 n n C29 O30 C61 doub 136 n n C29 N31 C61 sing 137 n n N31 C32 C61 sing 138 n n N31 H31 C61 sing 139 n n C32 C33 C61 sing 140 n n C32 H321 C61 sing 141 n n C32 H322 C61 sing 142 n n C33 C34 C61 sing 143 n n C33 H331 C61 sing 144 n n C33 H332 C61 sing 145 n n C34 C35 C61 sing 146 n n C34 H341 C61 sing 147 n n C34 H342 C61 sing 148 n n C35 H351 C61 sing 149 n n C35 H352 C61 sing 150 n n C35 H353 C61 sing 151 n n # _atom_sites.entry_id 2V10 _atom_sites.fract_transf_matrix[1][1] 0.006993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C61 C 1 1341 1341 C61 C61 . D 2 C61 O 1 1341 1341 C61 C61 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 C61 . . . D 2 33.155 21.503 85.523 1 20 ? C2 C61 1341 O 1 HETATM 2 O O3 C61 . . . D 2 32.078 21.352 86.441 1 20 ? O3 C61 1341 O 1 HETATM 3 C C4 C61 . . . D 2 32.321 20.267 87.313 1 20 ? C4 C61 1341 O 1 HETATM 4 C C5 C61 . . . D 2 31.211 20.218 88.352 1 20 ? C5 C61 1341 O 1 HETATM 5 C C6 C61 . . . D 2 31.361 18.933 89.176 1 20 ? C6 C61 1341 O 1 HETATM 6 O O7 C61 . . . D 2 31.633 19.236 90.55 1 20 ? O7 C61 1341 O 1 HETATM 7 O O8 C61 . . . D 2 30.111 19.48 92.942 1 20 ? O8 C61 1341 O 1 HETATM 8 C C9 C61 . . . D 2 28.82 19.883 93.383 1 20 ? C9 C61 1341 O 1 HETATM 9 C C10 C61 . . . D 2 31.864 16.84 90.938 1 20 ? C10 C61 1341 O 1 HETATM 10 C C11 C61 . . . D 2 31.315 18.076 91.336 1 20 ? C11 C61 1341 O 1 HETATM 11 C C12 C61 . . . D 2 30.59 18.196 92.535 1 20 ? C12 C61 1341 O 1 HETATM 12 C C13 C61 . . . D 2 30.337 17.056 93.317 1 20 ? C13 C61 1341 O 1 HETATM 13 C C14 C61 . . . D 2 30.855 15.799 92.896 1 20 ? C14 C61 1341 O 1 HETATM 14 C C15 C61 . . . D 2 31.583 15.697 91.707 1 20 ? C15 C61 1341 O 1 HETATM 15 C C16 C61 . . . D 2 32.074 14.369 91.209 1 20 ? C16 C61 1341 O 1 HETATM 16 C C17 C61 . . . D 2 32.313 14.478 89.69 1 20 ? C17 C61 1341 O 1 HETATM 17 C C18 C61 . . . D 2 30.952 14.766 89.028 1 20 ? C18 C61 1341 O 1 HETATM 18 C C19 C61 . . . D 2 31.136 14.913 87.53 1 20 ? C19 C61 1341 O 1 HETATM 19 C C20 C61 . . . D 2 29.985 13.612 89.306 1 20 ? C20 C61 1341 O 1 HETATM 20 C C21 C61 . . . D 2 32.937 13.156 89.173 1 20 ? C21 C61 1341 O 1 HETATM 21 C C22 C61 . . . D 2 34.294 12.929 89.876 1 20 ? C22 C61 1341 O 1 HETATM 22 N N23 C61 . . . D 2 34.719 14.12 90.632 1 20 ? N23 C61 1341 O 1 HETATM 23 C C24 C61 . . . D 2 35.37 12.648 88.814 1 20 ? C24 C61 1341 O 1 HETATM 24 O O25 C61 . . . D 2 35.405 13.705 87.848 1 20 ? O25 C61 1341 O 1 HETATM 25 C C26 C61 . . . D 2 36.764 12.527 89.445 1 20 ? C26 C61 1341 O 1 HETATM 26 C C27 C61 . . . D 2 37.388 11.212 88.935 1 20 ? C27 C61 1341 O 1 HETATM 27 C C28 C61 . . . D 2 38.879 11.132 89.374 1 20 ? C28 C61 1341 O 1 HETATM 28 C C29 C61 . . . D 2 36.639 10.013 89.548 1 20 ? C29 C61 1341 O 1 HETATM 29 O O30 C61 . . . D 2 36.531 9.935 90.766 1 20 ? O30 C61 1341 O 1 HETATM 30 N N31 C61 . . . D 2 36.195 9.079 88.713 1 20 ? N31 C61 1341 O 1 HETATM 31 C C32 C61 . . . D 2 35.463 7.89 89.163 1 20 ? C32 C61 1341 O 1 HETATM 32 C C33 C61 . . . D 2 35.559 6.814 88.075 1 20 ? C33 C61 1341 O 1 HETATM 33 C C34 C61 . . . D 2 34.417 5.794 88.249 1 20 ? C34 C61 1341 O 1 HETATM 34 C C35 C61 . . . D 2 34.631 4.937 89.524 1 20 ? C35 C61 1341 O 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 207 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #