data_2V11 # _model_server_result.job_id 2CfqomplmQk8jg7YCWxhEQ _model_server_result.datetime_utc '2024-12-07 09:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1341}' # _entry.id 2V11 # _exptl.entry_id 2V11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,4S,5R,7R)-4-AMINO-8-(BUTYLAMINO)-5-HYDROXY-2,7-DIMETHYL-8-OXOOCTYL 1-BENZYL-1H-INDOLE-3-CARBOXYLATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V11 _cell.length_a 142.9 _cell.length_b 142.9 _cell.length_c 142.9 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 C CYS 51 1_555 A SG CYS 58 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf2 A SG CYS 217 C CYS 217 1_555 A SG CYS 221 C CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf3 A SG CYS 259 C CYS 259 1_555 A SG CYS 296 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf4 B SG CYS 51 O CYS 51 1_555 B SG CYS 58 O CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf5 B SG CYS 217 O CYS 217 1_555 B SG CYS 221 O CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 259 O CYS 259 1_555 B SG CYS 296 O CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'C30 H41 N3 O4' _chem_comp.formula_weight 507.664 _chem_comp.id C80 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,4S,5R,7R)-4-AMINO-8-(BUTYLAMINO)-5-HYDROXY-2,7-DIMETHYL-8-OXOOCTYL 1-BENZYL-1H-INDOLE-3-CARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 H1 C80 sing 70 n n C1 C2 C80 sing 71 n y C1 C6 C80 doub 72 n y C2 H2 C80 sing 73 n n C2 C3 C80 doub 74 n y C3 H3 C80 sing 75 n n C3 C4 C80 sing 76 n y C4 H4 C80 sing 77 n n C4 C5 C80 doub 78 n y C5 H5 C80 sing 79 n n C5 C6 C80 sing 80 n y C6 C7 C80 sing 81 n n C7 H7C1 C80 sing 82 n n C7 H7C2 C80 sing 83 n n C7 N8 C80 sing 84 n n N8 C16 C80 sing 85 n y N8 C9 C80 sing 86 n y C16 H16 C80 sing 87 n n C16 C15 C80 doub 88 n y C9 C14 C80 sing 89 n y C9 C10 C80 doub 90 n y C13 H13 C80 sing 91 n n C13 C14 C80 doub 92 n y C13 C12 C80 sing 93 n y C14 C15 C80 sing 94 n y C15 C17 C80 sing 95 n n C10 H10 C80 sing 96 n n C10 C11 C80 sing 97 n y C11 H11 C80 sing 98 n n C11 C12 C80 doub 99 n y C12 H12 C80 sing 100 n n C17 O18 C80 doub 101 n n C17 O19 C80 sing 102 n n O19 C20 C80 sing 103 n n C20 H201 C80 sing 104 n n C20 H202 C80 sing 105 n n C20 C21 C80 sing 106 n n C21 H21 C80 sing 107 n n C21 C22 C80 sing 108 n n C21 C23 C80 sing 109 n n C22 H221 C80 sing 110 n n C22 H222 C80 sing 111 n n C22 H223 C80 sing 112 n n C23 H231 C80 sing 113 n n C23 H232 C80 sing 114 n n C23 C24 C80 sing 115 n n C24 H24 C80 sing 116 n n C24 N25 C80 sing 117 n n C24 C26 C80 sing 118 n n N25 H251 C80 sing 119 n n N25 H252 C80 sing 120 n n C26 H26 C80 sing 121 n n C26 O27 C80 sing 122 n n C26 C28 C80 sing 123 n n O27 H27 C80 sing 124 n n C28 H281 C80 sing 125 n n C28 H282 C80 sing 126 n n C28 C29 C80 sing 127 n n C29 C30 C80 sing 128 n n C29 C31 C80 sing 129 n n C29 H29 C80 sing 130 n n C30 H301 C80 sing 131 n n C30 H302 C80 sing 132 n n C30 H303 C80 sing 133 n n C31 O32 C80 doub 134 n n C31 N33 C80 sing 135 n n N33 C34 C80 sing 136 n n N33 H33 C80 sing 137 n n C34 C35 C80 sing 138 n n C34 H341 C80 sing 139 n n C34 H342 C80 sing 140 n n C35 C36 C80 sing 141 n n C35 H351 C80 sing 142 n n C35 H352 C80 sing 143 n n C36 C37 C80 sing 144 n n C36 H361 C80 sing 145 n n C36 H362 C80 sing 146 n n C37 H371 C80 sing 147 n n C37 H372 C80 sing 148 n n C37 H373 C80 sing 149 n n # _atom_sites.entry_id 2V11 _atom_sites.fract_transf_matrix[1][1] 0.006998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C80 C 1 1341 1341 C80 C80 . D 2 C80 O 1 1341 1341 C80 C80 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C80 . . . C 2 15.098 46.628 70.863 1 15 ? C1 C80 1341 C 1 HETATM 2 C C2 C80 . . . C 2 15.633 45.801 69.877 1 15 ? C2 C80 1341 C 1 HETATM 3 C C3 C80 . . . C 2 15.353 44.448 69.841 1 15 ? C3 C80 1341 C 1 HETATM 4 C C4 C80 . . . C 2 14.526 43.922 70.809 1 15 ? C4 C80 1341 C 1 HETATM 5 C C5 C80 . . . C 2 13.992 44.751 71.795 1 15 ? C5 C80 1341 C 1 HETATM 6 C C6 C80 . . . C 2 14.274 46.103 71.833 1 15 ? C6 C80 1341 C 1 HETATM 7 C C7 C80 . . . C 2 13.726 46.964 72.961 1 15 ? C7 C80 1341 C 1 HETATM 8 N N8 C80 . . . C 2 12.821 48.043 72.59 1 15 ? N8 C80 1341 C 1 HETATM 9 C C16 C80 . . . C 2 11.829 47.942 71.743 1 15 ? C16 C80 1341 C 1 HETATM 10 C C9 C80 . . . C 2 12.869 49.294 73.128 1 15 ? C9 C80 1341 C 1 HETATM 11 C C13 C80 . . . C 2 11.611 51.368 73.089 1 15 ? C13 C80 1341 C 1 HETATM 12 C C14 C80 . . . C 2 11.798 50.068 72.666 1 15 ? C14 C80 1341 C 1 HETATM 13 C C15 C80 . . . C 2 11.207 49.169 71.818 1 15 ? C15 C80 1341 C 1 HETATM 14 C C10 C80 . . . C 2 13.774 49.832 74.037 1 15 ? C10 C80 1341 C 1 HETATM 15 C C11 C80 . . . C 2 13.585 51.136 74.466 1 15 ? C11 C80 1341 C 1 HETATM 16 C C12 C80 . . . C 2 12.518 51.889 73.997 1 15 ? C12 C80 1341 C 1 HETATM 17 C C17 C80 . . . C 2 10.036 49.646 71.198 1 15 ? C17 C80 1341 C 1 HETATM 18 O O18 C80 . . . C 2 9.163 50.137 71.924 1 15 ? O18 C80 1341 C 1 HETATM 19 O O19 C80 . . . C 2 9.839 49.651 69.961 1 15 ? O19 C80 1341 C 1 HETATM 20 C C20 C80 . . . C 2 9.726 48.369 69.395 1 15 ? C20 C80 1341 C 1 HETATM 21 C C21 C80 . . . C 2 8.302 48.046 69.388 1 15 ? C21 C80 1341 C 1 HETATM 22 C C22 C80 . . . C 2 8.058 48.191 67.921 1 15 ? C22 C80 1341 C 1 HETATM 23 C C23 C80 . . . C 2 8.213 46.644 69.915 1 15 ? C23 C80 1341 C 1 HETATM 24 C C24 C80 . . . C 2 6.87 45.943 70.074 1 15 ? C24 C80 1341 C 1 HETATM 25 N N25 C80 . . . C 2 7.01 44.579 70.529 1 15 ? N25 C80 1341 C 1 HETATM 26 C C26 C80 . . . C 2 6.141 45.806 68.806 1 15 ? C26 C80 1341 C 1 HETATM 27 O O27 C80 . . . C 2 6.971 45.067 67.93 1 15 ? O27 C80 1341 C 1 HETATM 28 C C28 C80 . . . C 2 4.776 46.39 68.528 1 15 ? C28 C80 1341 C 1 HETATM 29 C C29 C80 . . . C 2 3.691 45.586 67.891 1 15 ? C29 C80 1341 C 1 HETATM 30 C C30 C80 . . . C 2 3.302 44.437 68.776 1 15 ? C30 C80 1341 C 1 HETATM 31 C C31 C80 . . . C 2 2.539 46.561 67.803 1 15 ? C31 C80 1341 C 1 HETATM 32 O O32 C80 . . . C 2 1.813 46.735 68.779 1 15 ? O32 C80 1341 C 1 HETATM 33 N N33 C80 . . . C 2 2.352 47.348 66.756 1 15 ? N33 C80 1341 C 1 HETATM 34 C C34 C80 . . . C 2 1.719 46.867 65.563 1 15 ? C34 C80 1341 C 1 HETATM 35 C C35 C80 . . . C 2 1.082 48.026 64.879 1 15 ? C35 C80 1341 C 1 HETATM 36 C C36 C80 . . . C 2 2.165 48.92 64.301 1 15 ? C36 C80 1341 C 1 HETATM 37 C C37 C80 . . . C 2 2.829 48.339 63.002 1 15 ? C37 C80 1341 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #