data_2V12
#
_model_server_result.job_id            c2YUu41kbTpGQ6_S7X67ew 
_model_server_result.datetime_utc      '2024-12-23 19:22:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v12 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":350}' 
#
_entry.id    2V12 
#
_exptl.entry_id    2V12 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              493.679 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2S,4S,5S,7R)-4-AMINO-8-(BUTYLAMINO)-5-HYDROXY-7-METHYL-2-(1-METHYLETHYL)-8-OXOOCTYL]-2-(3-METHOXYPROPOXY)BENZAMIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2V12 
_cell.length_a            142.9 
_cell.length_b            142.9 
_cell.length_c            142.9 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V12 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 51 C CYS 51 1_555 A SG CYS 58 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
disulf ? disulf2 A SG CYS 217 C CYS 217 1_555 A SG CYS 221 C CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf3 A SG CYS 259 C CYS 259 1_555 A SG CYS 296 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
disulf ? disulf4 B SG CYS 51 O CYS 51 1_555 B SG CYS 58 O CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf5 B SG CYS 217 O CYS 217 1_555 B SG CYS 221 O CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf6 B SG CYS 259 O CYS 259 1_555 B SG CYS 296 O CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'C27 H47 N3 O5' 
_chem_comp.formula_weight    493.679 
_chem_comp.id                C39 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2S,4S,5S,7R)-4-AMINO-8-(BUTYLAMINO)-5-HYDROXY-7-METHYL-2-(1-METHYLETHYL)-8-OXOOCTYL]-2-(3-METHOXYPROPOXY)BENZAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O2 C39 sing 70 n n 
O2 C3 C39 sing 71 n n 
C3 C4 C39 sing 72 n n 
C4 C5 C39 sing 73 n n 
C5 O6 C39 sing 74 n n 
O6 C7 C39 sing 75 n n 
C7 C8 C39 sing 76 n y 
C8 C9 C39 doub 77 n y 
C9 C10 C39 sing 78 n y 
C10 C11 C39 doub 79 n y 
C7 C12 C39 doub 80 n y 
C11 C12 C39 sing 81 n y 
C12 C13 C39 sing 82 n n 
C13 O14 C39 doub 83 n n 
C13 N15 C39 sing 84 n n 
N15 C16 C39 sing 85 n n 
C16 C17 C39 sing 86 n n 
C17 C18 C39 sing 87 n n 
C18 C19 C39 sing 88 n n 
C18 C20 C39 sing 89 n n 
C17 C21 C39 sing 90 n n 
C21 C22 C39 sing 91 n n 
C22 N23 C39 sing 92 n n 
C22 C24 C39 sing 93 n n 
C24 O25 C39 sing 94 n n 
C24 C26 C39 sing 95 n n 
C26 C27 C39 sing 96 n n 
C27 C28 C39 sing 97 n n 
C27 C29 C39 sing 98 n n 
C29 O30 C39 doub 99 n n 
C29 N31 C39 sing 100 n n 
N31 C32 C39 sing 101 n n 
C32 C33 C39 sing 102 n n 
C33 C34 C39 sing 103 n n 
C34 C35 C39 sing 104 n n 
C1 H1C1 C39 sing 105 n n 
C1 H1C2 C39 sing 106 n n 
C1 H1C3 C39 sing 107 n n 
C3 H3C1 C39 sing 108 n n 
C3 H3C2 C39 sing 109 n n 
C4 H4C1 C39 sing 110 n n 
C4 H4C2 C39 sing 111 n n 
C5 H5C1 C39 sing 112 n n 
C5 H5C2 C39 sing 113 n n 
C8 H8 C39 sing 114 n n 
C9 H9 C39 sing 115 n n 
C10 H10 C39 sing 116 n n 
C11 H11 C39 sing 117 n n 
N15 H15 C39 sing 118 n n 
C16 H161 C39 sing 119 n n 
C16 H162 C39 sing 120 n n 
C17 H17 C39 sing 121 n n 
C18 H18 C39 sing 122 n n 
C21 H211 C39 sing 123 n n 
C21 H212 C39 sing 124 n n 
C19 H191 C39 sing 125 n n 
C19 H192 C39 sing 126 n n 
C19 H193 C39 sing 127 n n 
C20 H201 C39 sing 128 n n 
C20 H202 C39 sing 129 n n 
C20 H203 C39 sing 130 n n 
C22 H22 C39 sing 131 n n 
N23 H231 C39 sing 132 n n 
N23 H232 C39 sing 133 n n 
C24 H24 C39 sing 134 n n 
O25 H25 C39 sing 135 n n 
C26 H261 C39 sing 136 n n 
C26 H262 C39 sing 137 n n 
C27 H27 C39 sing 138 n n 
C28 H281 C39 sing 139 n n 
C28 H282 C39 sing 140 n n 
C28 H283 C39 sing 141 n n 
N31 H31 C39 sing 142 n n 
C32 H321 C39 sing 143 n n 
C32 H322 C39 sing 144 n n 
C33 H331 C39 sing 145 n n 
C33 H332 C39 sing 146 n n 
C34 H341 C39 sing 147 n n 
C34 H342 C39 sing 148 n n 
C35 H351 C39 sing 149 n n 
C35 H352 C39 sing 150 n n 
C35 H353 C39 sing 151 n n 
#
_atom_sites.entry_id                     2V12 
_atom_sites.fract_transf_matrix[1][1]    0.006998 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006998 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C39 C 1 350 350 C39 C39 . 
D 2 C39 O 1 350 350 C39 C39 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 C39 . . . D 2 33.268 21.69 86.23 1 15 ? C1 C39 350 O 1 
HETATM 2 O O2 C39 . . . D 2 32.158 21.346 87.051 1 15 ? O2 C39 350 O 1 
HETATM 3 C C3 C39 . . . D 2 32.219 19.977 87.439 1 15 ? C3 C39 350 O 1 
HETATM 4 C C4 C39 . . . D 2 32.541 19.733 88.927 1 15 ? C4 C39 350 O 1 
HETATM 5 C C5 C39 . . . D 2 31.353 19.254 89.746 1 15 ? C5 C39 350 O 1 
HETATM 6 O O6 C39 . . . D 2 31.717 18.651 90.995 1 15 ? O6 C39 350 O 1 
HETATM 7 C C7 C39 . . . D 2 30.756 18.527 92.025 1 15 ? C7 C39 350 O 1 
HETATM 8 C C8 C39 . . . D 2 30.214 19.734 92.459 1 15 ? C8 C39 350 O 1 
HETATM 9 C C9 C39 . . . D 2 29.106 19.75 93.307 1 15 ? C9 C39 350 O 1 
HETATM 10 C C10 C39 . . . D 2 28.525 18.559 93.733 1 15 ? C10 C39 350 O 1 
HETATM 11 C C11 C39 . . . D 2 29.036 17.341 93.327 1 15 ? C11 C39 350 O 1 
HETATM 12 C C12 C39 . . . D 2 30.138 17.339 92.493 1 15 ? C12 C39 350 O 1 
HETATM 13 C C13 C39 . . . D 2 30.735 16.114 92.233 1 15 ? C13 C39 350 O 1 
HETATM 14 O O14 C39 . . . D 2 31.147 15.453 93.167 1 15 ? O14 C39 350 O 1 
HETATM 15 N N15 C39 . . . D 2 31.036 15.76 91.005 1 15 ? N15 C39 350 O 1 
HETATM 16 C C16 C39 . . . D 2 32.237 14.987 90.79 1 15 ? C16 C39 350 O 1 
HETATM 17 C C17 C39 . . . D 2 32.219 14.437 89.396 1 15 ? C17 C39 350 O 1 
HETATM 18 C C18 C39 . . . D 2 30.894 14.049 88.734 1 15 ? C18 C39 350 O 1 
HETATM 19 C C19 C39 . . . D 2 30.184 15.12 88.021 1 15 ? C19 C39 350 O 1 
HETATM 20 C C20 C39 . . . D 2 29.983 13.246 89.594 1 15 ? C20 C39 350 O 1 
HETATM 21 C C21 C39 . . . D 2 33.13 13.211 89.336 1 15 ? C21 C39 350 O 1 
HETATM 22 C C22 C39 . . . D 2 34.618 13.304 89.118 1 15 ? C22 C39 350 O 1 
HETATM 23 N N23 C39 . . . D 2 34.931 14.277 88.109 1 15 ? N23 C39 350 O 1 
HETATM 24 C C24 C39 . . . D 2 35.194 12.001 88.621 1 15 ? C24 C39 350 O 1 
HETATM 25 O O25 C39 . . . D 2 34.927 12.019 87.235 1 15 ? O25 C39 350 O 1 
HETATM 26 C C26 C39 . . . D 2 36.655 11.928 88.912 1 15 ? C26 C39 350 O 1 
HETATM 27 C C27 C39 . . . D 2 37.414 10.654 88.729 1 15 ? C27 C39 350 O 1 
HETATM 28 C C28 C39 . . . D 2 38.581 10.751 89.672 1 15 ? C28 C39 350 O 1 
HETATM 29 C C29 C39 . . . D 2 36.613 9.395 89.051 1 15 ? C29 C39 350 O 1 
HETATM 30 O O30 C39 . . . D 2 36 9.304 90.121 1 15 ? O30 C39 350 O 1 
HETATM 31 N N31 C39 . . . D 2 36.608 8.419 88.124 1 15 ? N31 C39 350 O 1 
HETATM 32 C C32 C39 . . . D 2 35.97 7.115 88.286 1 15 ? C32 C39 350 O 1 
HETATM 33 C C33 C39 . . . D 2 34.473 7.268 88.5 1 15 ? C33 C39 350 O 1 
HETATM 34 C C34 C39 . . . D 2 33.731 5.962 88.514 1 15 ? C34 C39 350 O 1 
HETATM 35 C C35 C39 . . . D 2 33.477 5.415 87.091 1 15 ? C35 C39 350 O 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#