data_2V13 # _model_server_result.job_id 2nCaGG2e1iEYvxauPVOWFA _model_server_result.datetime_utc '2024-11-27 00:03:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1341}' # _entry.id 2V13 # _exptl.entry_id 2V13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 465.626 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2R,4S,5S,7R)-4-AMINO-8-(BUTYLAMINO)-5-HYDROXY-2,7-DIMETHYL-8-OXOOCTYL]-2-(3-METHOXYPROPOXY)BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V13 _cell.length_a 98.4 _cell.length_b 98.4 _cell.length_c 95.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 51 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 217 A CYS 217 1_555 A SG CYS 221 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf3 A SG CYS 259 A CYS 259 1_555 A SG CYS 296 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C25 H43 N3 O5' _chem_comp.formula_weight 465.626 _chem_comp.id C40 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2R,4S,5S,7R)-4-AMINO-8-(BUTYLAMINO)-5-HYDROXY-2,7-DIMETHYL-8-OXOOCTYL]-2-(3-METHOXYPROPOXY)BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 C40 sing 70 n n O2 C3 C40 sing 71 n n C3 C4 C40 sing 72 n n C4 C5 C40 sing 73 n n C5 O6 C40 sing 74 n n O6 C7 C40 sing 75 n n C7 C8 C40 sing 76 n y C8 C9 C40 doub 77 n y C9 C10 C40 sing 78 n y C10 C11 C40 doub 79 n y C7 C12 C40 doub 80 n y C11 C12 C40 sing 81 n y C12 C13 C40 sing 82 n n C13 O14 C40 doub 83 n n C13 N15 C40 sing 84 n n C16 N15 C40 sing 85 n n C16 C17 C40 sing 86 n n C18 C17 C40 sing 87 n n C17 C19 C40 sing 88 n n C19 C20 C40 sing 89 n n N21 C20 C40 sing 90 n n C20 C22 C40 sing 91 n n C22 O23 C40 sing 92 n n C22 C24 C40 sing 93 n n C24 C25 C40 sing 94 n n C25 C26 C40 sing 95 n n C25 C27 C40 sing 96 n n C27 O28 C40 doub 97 n n C27 N29 C40 sing 98 n n C30 N29 C40 sing 99 n n C30 C31 C40 sing 100 n n C31 C32 C40 sing 101 n n C32 C33 C40 sing 102 n n C1 H1C1 C40 sing 103 n n C1 H1C2 C40 sing 104 n n C1 H1C3 C40 sing 105 n n C3 H3C1 C40 sing 106 n n C3 H3C2 C40 sing 107 n n C4 H4C1 C40 sing 108 n n C4 H4C2 C40 sing 109 n n C5 H5C1 C40 sing 110 n n C5 H5C2 C40 sing 111 n n C8 H8 C40 sing 112 n n C9 H9 C40 sing 113 n n C10 H10 C40 sing 114 n n C11 H11 C40 sing 115 n n N15 H15 C40 sing 116 n n C16 H161 C40 sing 117 n n C16 H162 C40 sing 118 n n C17 H17 C40 sing 119 n n C18 H181 C40 sing 120 n n C18 H182 C40 sing 121 n n C18 H183 C40 sing 122 n n C19 H191 C40 sing 123 n n C19 H192 C40 sing 124 n n C20 H20 C40 sing 125 n n N21 H211 C40 sing 126 n n N21 H212 C40 sing 127 n n C22 H22 C40 sing 128 n n O23 H23 C40 sing 129 n n C24 H241 C40 sing 130 n n C24 H242 C40 sing 131 n n C25 H25 C40 sing 132 n n C26 H261 C40 sing 133 n n C26 H262 C40 sing 134 n n C26 H263 C40 sing 135 n n N29 H29 C40 sing 136 n n C30 H301 C40 sing 137 n n C30 H302 C40 sing 138 n n C31 H311 C40 sing 139 n n C31 H312 C40 sing 140 n n C32 H321 C40 sing 141 n n C32 H322 C40 sing 142 n n C33 H331 C40 sing 143 n n C33 H332 C40 sing 144 n n C33 H333 C40 sing 145 n n # _atom_sites.entry_id 2V13 _atom_sites.fract_transf_matrix[1][1] 0.010163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id C40 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1341 _pdbx_nonpoly_scheme.auth_seq_num 1341 _pdbx_nonpoly_scheme.pdb_mon_id C40 _pdbx_nonpoly_scheme.auth_mon_id C40 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C40 . . . B 2 86.293 25.635 -37.16 1 15 ? C1 C40 1341 A 1 HETATM 2 O O2 C40 . . . B 2 85.701 25.673 -35.871 1 15 ? O2 C40 1341 A 1 HETATM 3 C C3 C40 . . . B 2 84.708 24.697 -36.006 1 15 ? C3 C40 1341 A 1 HETATM 4 C C4 C40 . . . B 2 85.057 23.558 -35.082 1 15 ? C4 C40 1341 A 1 HETATM 5 C C5 C40 . . . B 2 83.686 22.981 -34.803 1 15 ? C5 C40 1341 A 1 HETATM 6 O O6 C40 . . . B 2 83.707 21.709 -34.179 1 15 ? O6 C40 1341 A 1 HETATM 7 C C7 C40 . . . B 2 82.711 21.347 -33.288 1 15 ? C7 C40 1341 A 1 HETATM 8 C C8 C40 . . . B 2 82.606 22.181 -32.187 1 15 ? C8 C40 1341 A 1 HETATM 9 C C9 C40 . . . B 2 81.584 22.074 -31.29 1 15 ? C9 C40 1341 A 1 HETATM 10 C C10 C40 . . . B 2 80.64 21.129 -31.495 1 15 ? C10 C40 1341 A 1 HETATM 11 C C11 C40 . . . B 2 80.715 20.29 -32.585 1 15 ? C11 C40 1341 A 1 HETATM 12 C C12 C40 . . . B 2 81.741 20.372 -33.487 1 15 ? C12 C40 1341 A 1 HETATM 13 C C13 C40 . . . B 2 81.807 19.494 -34.583 1 15 ? C13 C40 1341 A 1 HETATM 14 O O14 C40 . . . B 2 81.831 18.295 -34.379 1 15 ? O14 C40 1341 A 1 HETATM 15 C C16 C40 . . . B 2 82.916 18.962 -36.615 1 15 ? C16 C40 1341 A 1 HETATM 16 N N15 C40 . . . B 2 82.247 19.898 -35.745 1 15 ? N15 C40 1341 A 1 HETATM 17 C C18 C40 . . . B 2 80.961 19.811 -38.005 1 15 ? C18 C40 1341 A 1 HETATM 18 C C17 C40 . . . B 2 82.414 19.253 -37.985 1 15 ? C17 C40 1341 A 1 HETATM 19 C C19 C40 . . . B 2 82.43 17.981 -38.779 1 15 ? C19 C40 1341 A 1 HETATM 20 N N21 C40 . . . B 2 84.768 18.249 -39.287 1 15 ? N21 C40 1341 A 1 HETATM 21 C C20 C40 . . . B 2 83.733 17.319 -38.924 1 15 ? C20 C40 1341 A 1 HETATM 22 C C22 C40 . . . B 2 83.565 16.302 -40.036 1 15 ? C22 C40 1341 A 1 HETATM 23 O O23 C40 . . . B 2 83.943 17.105 -41.157 1 15 ? O23 C40 1341 A 1 HETATM 24 C C24 C40 . . . B 2 84.486 15.065 -39.962 1 15 ? C24 C40 1341 A 1 HETATM 25 C C25 C40 . . . B 2 84.507 14.22 -41.213 1 15 ? C25 C40 1341 A 1 HETATM 26 C C26 C40 . . . B 2 85.648 13.288 -41.234 1 15 ? C26 C40 1341 A 1 HETATM 27 C C27 C40 . . . B 2 83.32 13.351 -41.416 1 15 ? C27 C40 1341 A 1 HETATM 28 O O28 C40 . . . B 2 82.697 12.922 -40.451 1 15 ? O28 C40 1341 A 1 HETATM 29 C C30 C40 . . . B 2 81.774 12.373 -42.982 1 15 ? C30 C40 1341 A 1 HETATM 30 N N29 C40 . . . B 2 83.016 13.048 -42.659 1 15 ? N29 C40 1341 A 1 HETATM 31 C C31 C40 . . . B 2 80.563 13.239 -42.673 1 15 ? C31 C40 1341 A 1 HETATM 32 C C32 C40 . . . B 2 79.289 12.733 -43.33 1 15 ? C32 C40 1341 A 1 HETATM 33 C C33 C40 . . . B 2 78.874 11.349 -42.743 1 15 ? C33 C40 1341 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #