data_2V16 # _model_server_result.job_id xvOuPHYCHXfdEVlymjR0nQ _model_server_result.datetime_utc '2024-11-23 07:46:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1327}' # _entry.id 2V16 # _exptl.entry_id 2V16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 489.647 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL (3R)-1-[(5S,6S,8R)-5-AMINO-9-BUTYLAMINO-6-HYDROXY-3,3,8-TRIMETHYL-9-OXO-NONANOYL]-3,4-DIHYDRO-2H-QUINOLINE-3-CARBOXYLATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V16 _cell.length_a 142.9 _cell.length_b 142.9 _cell.length_c 142.9 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 71.45 142.9 71.45 3 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -71.45 71.45 142.9 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 C CYS 45 1_555 A SG CYS 58 C CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? disulf ? disulf2 A SG CYS 217 C CYS 206 1_555 A SG CYS 221 C CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? disulf ? disulf3 A SG CYS 259 C CYS 249 1_555 A SG CYS 296 C CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? disulf ? disulf4 B SG CYS 51 O CYS 45 1_555 B SG CYS 58 O CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? disulf ? disulf5 B SG CYS 217 O CYS 206 1_555 B SG CYS 221 O CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? disulf ? disulf6 B SG CYS 259 O CYS 249 1_555 B SG CYS 296 O CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C27 H43 N3 O5' _chem_comp.formula_weight 489.647 _chem_comp.id C47 _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL (3R)-1-[(5S,6S,8R)-5-AMINO-9-BUTYLAMINO-6-HYDROXY-3,3,8-TRIMETHYL-9-OXO-NONANOYL]-3,4-DIHYDRO-2H-QUINOLINE-3-CARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 C47 sing 70 n n O2 C3 C47 sing 71 n n C3 O4 C47 doub 72 n n C3 C5 C47 sing 73 n n C5 C6 C47 sing 74 n n C5 C14 C47 sing 75 n n C6 C7 C47 sing 76 n n C7 C8 C47 sing 77 n y C7 C12 C47 doub 78 n y C8 C9 C47 doub 79 n y C9 C10 C47 sing 80 n y C10 C11 C47 doub 81 n y C11 C12 C47 sing 82 n y C12 N13 C47 sing 83 n n N13 C14 C47 sing 84 n n N13 C15 C47 sing 85 n n C15 O16 C47 doub 86 n n C15 C17 C47 sing 87 n n C17 C18 C47 sing 88 n n C18 C19 C47 sing 89 n n C18 C20 C47 sing 90 n n C18 C21 C47 sing 91 n n C21 C22 C47 sing 92 n n C22 N23 C47 sing 93 n n C22 C24 C47 sing 94 n n C24 O25 C47 sing 95 n n C24 C26 C47 sing 96 n n C26 C27 C47 sing 97 n n C27 C28 C47 sing 98 n n C27 C29 C47 sing 99 n n C29 O30 C47 doub 100 n n C29 N31 C47 sing 101 n n N31 C32 C47 sing 102 n n C32 C33 C47 sing 103 n n C33 C34 C47 sing 104 n n C34 C35 C47 sing 105 n n C1 H1C1 C47 sing 106 n n C1 H1C2 C47 sing 107 n n C1 H1C3 C47 sing 108 n n C5 H5 C47 sing 109 n n C6 H6C1 C47 sing 110 n n C6 H6C2 C47 sing 111 n n C14 H141 C47 sing 112 n n C14 H142 C47 sing 113 n n C8 H8 C47 sing 114 n n C9 H9 C47 sing 115 n n C10 H10 C47 sing 116 n n C11 H11 C47 sing 117 n n C17 H171 C47 sing 118 n n C17 H172 C47 sing 119 n n C19 H191 C47 sing 120 n n C19 H192 C47 sing 121 n n C19 H193 C47 sing 122 n n C20 H201 C47 sing 123 n n C20 H202 C47 sing 124 n n C20 H203 C47 sing 125 n n C21 H211 C47 sing 126 n n C21 H212 C47 sing 127 n n C22 H22 C47 sing 128 n n N23 H231 C47 sing 129 n n N23 H232 C47 sing 130 n n C24 H24 C47 sing 131 n n O25 H25 C47 sing 132 n n C26 H261 C47 sing 133 n n C26 H262 C47 sing 134 n n C27 H27 C47 sing 135 n n C28 H281 C47 sing 136 n n C28 H282 C47 sing 137 n n C28 H283 C47 sing 138 n n N31 H31 C47 sing 139 n n C32 H321 C47 sing 140 n n C32 H322 C47 sing 141 n n C33 H331 C47 sing 142 n n C33 H332 C47 sing 143 n n C34 H341 C47 sing 144 n n C34 H342 C47 sing 145 n n C35 H351 C47 sing 146 n n C35 H352 C47 sing 147 n n C35 H353 C47 sing 148 n n # _atom_sites.entry_id 2V16 _atom_sites.fract_transf_matrix[1][1] 0.006998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C47 C 1 1327 1327 C47 C47 . D 2 C47 O 1 1327 1327 C47 C47 . E 3 HOH C 1 2001 2001 HOH HOH . E 3 HOH C 2 2002 2002 HOH HOH . E 3 HOH C 3 2003 2003 HOH HOH . E 3 HOH C 4 2004 2004 HOH HOH . E 3 HOH C 5 2005 2005 HOH HOH . E 3 HOH C 6 2006 2006 HOH HOH . E 3 HOH C 7 2007 2007 HOH HOH . E 3 HOH C 8 2008 2008 HOH HOH . E 3 HOH C 9 2009 2009 HOH HOH . E 3 HOH C 10 2010 2010 HOH HOH . E 3 HOH C 11 2011 2011 HOH HOH . E 3 HOH C 12 2012 2012 HOH HOH . E 3 HOH C 13 2013 2013 HOH HOH . E 3 HOH C 14 2014 2014 HOH HOH . E 3 HOH C 15 2015 2015 HOH HOH . F 3 HOH O 1 2001 2001 HOH HOH . F 3 HOH O 2 2002 2002 HOH HOH . F 3 HOH O 3 2003 2003 HOH HOH . F 3 HOH O 4 2004 2004 HOH HOH . F 3 HOH O 5 2005 2005 HOH HOH . F 3 HOH O 6 2006 2006 HOH HOH . F 3 HOH O 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C47 . . . D 2 33.618 21.059 87.161 1 15 ? C1 C47 1327 O 1 HETATM 2 O O2 C47 . . . D 2 32.402 20.508 87.645 1 15 ? O2 C47 1327 O 1 HETATM 3 C C3 C47 . . . D 2 32.319 20.205 89.117 1 15 ? C3 C47 1327 O 1 HETATM 4 O O4 C47 . . . D 2 32.93 20.76 90.379 1 15 ? O4 C47 1327 O 1 HETATM 5 C C5 C47 . . . D 2 31.411 19.138 89.616 1 15 ? C5 C47 1327 O 1 HETATM 6 C C6 C47 . . . D 2 31.284 20.021 90.992 1 15 ? C6 C47 1327 O 1 HETATM 7 C C7 C47 . . . D 2 30.364 19.397 91.885 1 15 ? C7 C47 1327 O 1 HETATM 8 C C8 C47 . . . D 2 29.438 20.112 92.668 1 15 ? C8 C47 1327 O 1 HETATM 9 C C9 C47 . . . D 2 28.44 19.463 93.502 1 15 ? C9 C47 1327 O 1 HETATM 10 C C10 C47 . . . D 2 28.64 18.049 93.599 1 15 ? C10 C47 1327 O 1 HETATM 11 C C11 C47 . . . D 2 29.681 17.391 92.818 1 15 ? C11 C47 1327 O 1 HETATM 12 C C12 C47 . . . D 2 30.494 18.122 91.894 1 15 ? C12 C47 1327 O 1 HETATM 13 N N13 C47 . . . D 2 31.57 17.492 90.989 1 15 ? N13 C47 1327 O 1 HETATM 14 C C14 C47 . . . D 2 32.42 18.058 89.988 1 15 ? C14 C47 1327 O 1 HETATM 15 C C15 C47 . . . D 2 31.818 16.155 91.091 1 15 ? C15 C47 1327 O 1 HETATM 16 O O16 C47 . . . D 2 31.341 15.346 92.058 1 15 ? O16 C47 1327 O 1 HETATM 17 C C17 C47 . . . D 2 32.891 15.591 90.235 1 15 ? C17 C47 1327 O 1 HETATM 18 C C18 C47 . . . D 2 32.481 14.121 90.049 1 15 ? C18 C47 1327 O 1 HETATM 19 C C19 C47 . . . D 2 31.001 14.354 89.321 1 15 ? C19 C47 1327 O 1 HETATM 20 C C20 C47 . . . D 2 32.785 13.171 91.247 1 15 ? C20 C47 1327 O 1 HETATM 21 C C21 C47 . . . D 2 33.485 13.498 88.998 1 15 ? C21 C47 1327 O 1 HETATM 22 C C22 C47 . . . D 2 34.959 13.667 89.526 1 15 ? C22 C47 1327 O 1 HETATM 23 N N23 C47 . . . D 2 35.608 14.54 88.567 1 15 ? N23 C47 1327 O 1 HETATM 24 C C24 C47 . . . D 2 35.531 12.332 88.982 1 15 ? C24 C47 1327 O 1 HETATM 25 O O25 C47 . . . D 2 35.305 11.964 87.621 1 15 ? O25 C47 1327 O 1 HETATM 26 C C26 C47 . . . D 2 36.884 12.473 89.469 1 15 ? C26 C47 1327 O 1 HETATM 27 C C27 C47 . . . D 2 37.585 11.305 89.068 1 15 ? C27 C47 1327 O 1 HETATM 28 C C28 C47 . . . D 2 38.965 11.354 89.832 1 15 ? C28 C47 1327 O 1 HETATM 29 C C29 C47 . . . D 2 36.804 10.033 89.369 1 15 ? C29 C47 1327 O 1 HETATM 30 O O30 C47 . . . D 2 35.996 10.048 90.315 1 15 ? O30 C47 1327 O 1 HETATM 31 N N31 C47 . . . D 2 37.049 8.851 88.636 1 15 ? N31 C47 1327 O 1 HETATM 32 C C32 C47 . . . D 2 36.359 7.662 88.941 1 15 ? C32 C47 1327 O 1 HETATM 33 C C33 C47 . . . D 2 34.915 7.893 88.713 1 15 ? C33 C47 1327 O 1 HETATM 34 C C34 C47 . . . D 2 34.28 6.567 88.108 1 15 ? C34 C47 1327 O 1 HETATM 35 C C35 C47 . . . D 2 34.185 5.336 89.202 1 15 ? C35 C47 1327 O 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #