data_2V18 # _model_server_result.job_id b8dleaCCJjzClH6in4yRMw _model_server_result.datetime_utc '2024-11-04 23:01:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":101}' # _entry.id 2V18 # _exptl.entry_id 2V18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V18 _cell.length_a 67.481 _cell.length_b 98.038 _cell.length_c 137.595 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 P N N ? 2 R N N ? 2 T N N ? 2 V N N ? 2 X N N ? 2 Z N N ? 2 AA N N ? 2 CA N N ? 2 EA N N ? 2 GA N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 140 n n N1 C10 FMN doub 141 n n C2 O2 FMN doub 142 n n C2 N3 FMN sing 143 n n N3 C4 FMN sing 144 n n N3 HN3 FMN sing 145 n n C4 O4 FMN doub 146 n n C4 C4A FMN sing 147 n n C4A N5 FMN doub 148 n n C4A C10 FMN sing 149 n n N5 C5A FMN sing 150 n n C5A C6 FMN doub 151 n y C5A C9A FMN sing 152 n y C6 C7 FMN sing 153 n y C6 H6 FMN sing 154 n n C7 C7M FMN sing 155 n n C7 C8 FMN doub 156 n y C7M HM71 FMN sing 157 n n C7M HM72 FMN sing 158 n n C7M HM73 FMN sing 159 n n C8 C8M FMN sing 160 n n C8 C9 FMN sing 161 n y C8M HM81 FMN sing 162 n n C8M HM82 FMN sing 163 n n C8M HM83 FMN sing 164 n n C9 C9A FMN doub 165 n y C9 H9 FMN sing 166 n n C9A N10 FMN sing 167 n n N10 C10 FMN sing 168 n n N10 C1' FMN sing 169 n n C1' C2' FMN sing 170 n n C1' "H1'1" FMN sing 171 n n C1' "H1'2" FMN sing 172 n n C2' O2' FMN sing 173 n n C2' C3' FMN sing 174 n n C2' H2' FMN sing 175 n n O2' HO2' FMN sing 176 n n C3' O3' FMN sing 177 n n C3' C4' FMN sing 178 n n C3' H3' FMN sing 179 n n O3' HO3' FMN sing 180 n n C4' O4' FMN sing 181 n n C4' C5' FMN sing 182 n n C4' H4' FMN sing 183 n n O4' HO4' FMN sing 184 n n C5' O5' FMN sing 185 n n C5' "H5'1" FMN sing 186 n n C5' "H5'2" FMN sing 187 n n O5' P FMN sing 188 n n P O1P FMN doub 189 n n P O2P FMN sing 190 n n P O3P FMN sing 191 n n O2P HOP2 FMN sing 192 n n O3P HOP3 FMN sing 193 n n # _atom_sites.entry_id 2V18 _atom_sites.fract_transf_matrix[1][1] 0.014819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 FMN A 1 101 101 FMN FMN . N 2 FMN B 1 101 101 FMN FMN . O 3 COA B 1 201 201 COA COA . P 2 FMN C 1 101 101 FMN FMN . Q 3 COA C 1 201 201 COA COA . R 2 FMN D 1 101 101 FMN FMN . S 3 COA D 1 201 201 COA COA . T 2 FMN E 1 101 101 FMN FMN . U 3 COA E 1 201 201 COA COA . V 2 FMN F 1 101 101 FMN FMN . W 3 COA F 1 201 201 COA COA . X 2 FMN G 1 101 101 FMN FMN . Y 3 COA G 1 201 201 COA COA . Z 2 FMN H 1 101 101 FMN FMN . AA 2 FMN I 1 101 101 FMN FMN . BA 3 COA I 1 201 201 COA COA . CA 2 FMN J 1 101 101 FMN FMN . DA 3 COA J 1 201 201 COA COA . EA 2 FMN K 1 101 101 FMN FMN . FA 3 COA K 1 201 201 COA COA . GA 2 FMN L 1 101 101 FMN FMN . HA 4 HOH A 1 2001 2001 HOH HOH . IA 4 HOH B 1 2001 2001 HOH HOH . JA 4 HOH C 1 2001 2001 HOH HOH . JA 4 HOH C 2 2002 2002 HOH HOH . JA 4 HOH C 3 2003 2003 HOH HOH . KA 4 HOH D 1 2001 2001 HOH HOH . KA 4 HOH D 2 2002 2002 HOH HOH . KA 4 HOH D 3 2003 2003 HOH HOH . LA 4 HOH E 1 2001 2001 HOH HOH . LA 4 HOH E 2 2002 2002 HOH HOH . MA 4 HOH F 1 2001 2001 HOH HOH . MA 4 HOH F 2 2002 2002 HOH HOH . MA 4 HOH F 3 2003 2003 HOH HOH . MA 4 HOH F 4 2004 2004 HOH HOH . MA 4 HOH F 5 2005 2005 HOH HOH . NA 4 HOH G 1 2001 2001 HOH HOH . NA 4 HOH G 2 2002 2002 HOH HOH . OA 4 HOH H 1 2001 2001 HOH HOH . OA 4 HOH H 2 2002 2002 HOH HOH . PA 4 HOH I 1 2001 2001 HOH HOH . PA 4 HOH I 2 2002 2002 HOH HOH . QA 4 HOH J 1 2001 2001 HOH HOH . QA 4 HOH J 2 2002 2002 HOH HOH . RA 4 HOH K 1 2001 2001 HOH HOH . SA 4 HOH L 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . AA 2 50.49 -17.603 64.557 1 47.29 ? N1 FMN 101 I 1 HETATM 2 C C2 FMN . . . AA 2 49.538 -17.719 63.576 1 47.52 ? C2 FMN 101 I 1 HETATM 3 O O2 FMN . . . AA 2 48.629 -18.541 63.679 1 47.53 ? O2 FMN 101 I 1 HETATM 4 N N3 FMN . . . AA 2 49.584 -16.873 62.495 1 47.71 ? N3 FMN 101 I 1 HETATM 5 C C4 FMN . . . AA 2 50.559 -15.914 62.372 1 47.45 ? C4 FMN 101 I 1 HETATM 6 O O4 FMN . . . AA 2 50.817 -15.519 61.246 1 47.4 ? O4 FMN 101 I 1 HETATM 7 C C4A FMN . . . AA 2 51.512 -15.792 63.363 1 47.52 ? C4A FMN 101 I 1 HETATM 8 N N5 FMN . . . AA 2 52.51 -14.845 63.272 1 47.46 ? N5 FMN 101 I 1 HETATM 9 C C5A FMN . . . AA 2 53.471 -14.711 64.259 1 47.58 ? C5A FMN 101 I 1 HETATM 10 C C6 FMN . . . AA 2 54.45 -13.726 64.145 1 47.16 ? C6 FMN 101 I 1 HETATM 11 C C7 FMN . . . AA 2 55.41 -13.576 65.132 1 47.38 ? C7 FMN 101 I 1 HETATM 12 C C7M FMN . . . AA 2 56.214 -12.306 65.181 1 46.31 ? C7M FMN 101 I 1 HETATM 13 C C8 FMN . . . AA 2 55.409 -14.448 66.227 1 47.69 ? C8 FMN 101 I 1 HETATM 14 C C8M FMN . . . AA 2 56.517 -14.426 67.245 1 47.21 ? C8M FMN 101 I 1 HETATM 15 C C9 FMN . . . AA 2 54.432 -15.434 66.343 1 47.7 ? C9 FMN 101 I 1 HETATM 16 C C9A FMN . . . AA 2 53.438 -15.569 65.363 1 48.15 ? C9A FMN 101 I 1 HETATM 17 N N10 FMN . . . AA 2 52.43 -16.547 65.44 1 49.21 ? N10 FMN 101 I 1 HETATM 18 C C10 FMN . . . AA 2 51.472 -16.651 64.455 1 48.01 ? C10 FMN 101 I 1 HETATM 19 C C1' FMN . . . AA 2 52.252 -17.394 66.65 1 52.5 ? C1' FMN 101 I 1 HETATM 20 C C2' FMN . . . AA 2 53.242 -18.533 66.597 1 54.97 ? C2' FMN 101 I 1 HETATM 21 O O2' FMN . . . AA 2 52.71 -19.529 65.768 1 53.99 ? O2' FMN 101 I 1 HETATM 22 C C3' FMN . . . AA 2 53.497 -18.959 68.04 1 57.87 ? C3' FMN 101 I 1 HETATM 23 O O3' FMN . . . AA 2 54.834 -18.689 68.399 1 57.84 ? O3' FMN 101 I 1 HETATM 24 C C4' FMN . . . AA 2 53.184 -20.414 68.265 1 60.66 ? C4' FMN 101 I 1 HETATM 25 O O4' FMN . . . AA 2 51.82 -20.587 67.982 1 60.61 ? O4' FMN 101 I 1 HETATM 26 C C5' FMN . . . AA 2 53.51 -20.772 69.71 1 63.18 ? C5' FMN 101 I 1 HETATM 27 O O5' FMN . . . AA 2 54.896 -20.567 69.916 1 65.62 ? O5' FMN 101 I 1 HETATM 28 P P FMN . . . AA 2 55.925 -21.735 70.394 1 67.58 ? P FMN 101 I 1 HETATM 29 O O1P FMN . . . AA 2 56.733 -21.189 71.564 1 67.46 ? O1P FMN 101 I 1 HETATM 30 O O2P FMN . . . AA 2 55.087 -22.922 70.846 1 67.24 ? O2P FMN 101 I 1 HETATM 31 O O3P FMN . . . AA 2 56.879 -22.138 69.283 1 65.48 ? O3P FMN 101 I 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #