data_2V21 # _model_server_result.job_id fwphMSJnoPAponstcN5EKg _model_server_result.datetime_utc '2024-10-19 23:46:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":101}' # _entry.id 2V21 # _exptl.entry_id 2V21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V21 _cell.length_a 65.765 _cell.length_b 65.765 _cell.length_c 202.408 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 65.765 65.765 101.204 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 54 n n N1 C10 FMN doub 55 n n C2 O2 FMN doub 56 n n C2 N3 FMN sing 57 n n N3 C4 FMN sing 58 n n N3 HN3 FMN sing 59 n n C4 O4 FMN doub 60 n n C4 C4A FMN sing 61 n n C4A N5 FMN doub 62 n n C4A C10 FMN sing 63 n n N5 C5A FMN sing 64 n n C5A C6 FMN doub 65 n y C5A C9A FMN sing 66 n y C6 C7 FMN sing 67 n y C6 H6 FMN sing 68 n n C7 C7M FMN sing 69 n n C7 C8 FMN doub 70 n y C7M HM71 FMN sing 71 n n C7M HM72 FMN sing 72 n n C7M HM73 FMN sing 73 n n C8 C8M FMN sing 74 n n C8 C9 FMN sing 75 n y C8M HM81 FMN sing 76 n n C8M HM82 FMN sing 77 n n C8M HM83 FMN sing 78 n n C9 C9A FMN doub 79 n y C9 H9 FMN sing 80 n n C9A N10 FMN sing 81 n n N10 C10 FMN sing 82 n n N10 C1' FMN sing 83 n n C1' C2' FMN sing 84 n n C1' "H1'1" FMN sing 85 n n C1' "H1'2" FMN sing 86 n n C2' O2' FMN sing 87 n n C2' C3' FMN sing 88 n n C2' H2' FMN sing 89 n n O2' HO2' FMN sing 90 n n C3' O3' FMN sing 91 n n C3' C4' FMN sing 92 n n C3' H3' FMN sing 93 n n O3' HO3' FMN sing 94 n n C4' O4' FMN sing 95 n n C4' C5' FMN sing 96 n n C4' H4' FMN sing 97 n n O4' HO4' FMN sing 98 n n C5' O5' FMN sing 99 n n C5' "H5'1" FMN sing 100 n n C5' "H5'2" FMN sing 101 n n O5' P FMN sing 102 n n P O1P FMN doub 103 n n P O2P FMN sing 104 n n P O3P FMN sing 105 n n O2P HOP2 FMN sing 106 n n O3P HOP3 FMN sing 107 n n # _atom_sites.entry_id 2V21 _atom_sites.fract_transf_matrix[1][1] 0.015206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FMN A 1 101 101 FMN FMN . H 3 NA A 1 1069 1069 NA NA . I 2 FMN C 1 101 101 FMN FMN . J 2 FMN F 1 101 101 FMN FMN . K 3 NA F 1 1069 1069 NA NA . L 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH C 1 2001 2001 HOH HOH . N 4 HOH C 2 2002 2002 HOH HOH . N 4 HOH C 3 2003 2003 HOH HOH . N 4 HOH C 4 2004 2004 HOH HOH . N 4 HOH C 5 2005 2005 HOH HOH . N 4 HOH C 6 2006 2006 HOH HOH . O 4 HOH E 1 2001 2001 HOH HOH . O 4 HOH E 2 2002 2002 HOH HOH . P 4 HOH F 1 2001 2001 HOH HOH . P 4 HOH F 2 2002 2002 HOH HOH . P 4 HOH F 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . I 2 42.396 24.03 52.448 0.7 78.82 ? N1 FMN 101 C 1 HETATM 2 C C2 FMN . . . I 2 41.955 23.185 53.437 0.7 78.45 ? C2 FMN 101 C 1 HETATM 3 O O2 FMN . . . I 2 40.907 23.418 54.032 0.7 78.45 ? O2 FMN 101 C 1 HETATM 4 N N3 FMN . . . I 2 42.668 22.05 53.741 0.7 78.65 ? N3 FMN 101 C 1 HETATM 5 C C4 FMN . . . I 2 43.862 21.771 53.106 0.7 78.71 ? C4 FMN 101 C 1 HETATM 6 O O4 FMN . . . I 2 44.724 21.336 53.874 0.7 78.46 ? O4 FMN 101 C 1 HETATM 7 C C4A FMN . . . I 2 44.294 22.621 52.08 0.7 78.68 ? C4A FMN 101 C 1 HETATM 8 N N5 FMN . . . I 2 45.463 22.358 51.39 0.7 78.22 ? N5 FMN 101 C 1 HETATM 9 C C5A FMN . . . I 2 45.905 23.213 50.401 0.7 78.53 ? C5A FMN 101 C 1 HETATM 10 C C6 FMN . . . I 2 47.087 22.915 49.735 0.7 78.29 ? C6 FMN 101 C 1 HETATM 11 C C7 FMN . . . I 2 47.555 23.751 48.732 0.7 78.3 ? C7 FMN 101 C 1 HETATM 12 C C7M FMN . . . I 2 48.502 23.162 47.729 0.7 77.46 ? C7M FMN 101 C 1 HETATM 13 C C8 FMN . . . I 2 46.833 24.901 48.406 0.7 78.43 ? C8 FMN 101 C 1 HETATM 14 C C8M FMN . . . I 2 47.469 25.972 47.569 0.7 78.36 ? C8M FMN 101 C 1 HETATM 15 C C9 FMN . . . I 2 45.653 25.211 49.071 0.7 78.33 ? C9 FMN 101 C 1 HETATM 16 C C9A FMN . . . I 2 45.173 24.363 50.078 0.7 78.73 ? C9A FMN 101 C 1 HETATM 17 N N10 FMN . . . I 2 43.993 24.63 50.77 0.7 79.03 ? N10 FMN 101 C 1 HETATM 18 C C10 FMN . . . I 2 43.566 23.766 51.767 0.7 78.69 ? C10 FMN 101 C 1 HETATM 19 C C1' FMN . . . I 2 43.159 25.849 50.474 0.7 80.49 ? C1' FMN 101 C 1 HETATM 20 C C2' FMN . . . I 2 43.681 27.041 51.279 0.7 81.17 ? C2' FMN 101 C 1 HETATM 21 O O2' FMN . . . I 2 43.612 26.73 52.653 0.7 80.98 ? O2' FMN 101 C 1 HETATM 22 C C3' FMN . . . I 2 42.91 28.342 51.002 0.7 82.02 ? C3' FMN 101 C 1 HETATM 23 O O3' FMN . . . I 2 41.607 28.278 51.537 0.7 80.71 ? O3' FMN 101 C 1 HETATM 24 C C4' FMN . . . I 2 42.794 28.688 49.511 0.7 83.06 ? C4' FMN 101 C 1 HETATM 25 O O4' FMN . . . I 2 43.986 28.401 48.81 0.7 83.01 ? O4' FMN 101 C 1 HETATM 26 C C5' FMN . . . I 2 42.465 30.166 49.323 0.7 83.77 ? C5' FMN 101 C 1 HETATM 27 O O5' FMN . . . I 2 43.527 30.955 49.816 0.7 84.76 ? O5' FMN 101 C 1 HETATM 28 P P FMN . . . I 2 43.501 32.553 49.628 0.7 85.67 ? P FMN 101 C 1 HETATM 29 O O1P FMN . . . I 2 44.436 33.165 50.647 0.7 85.3 ? O1P FMN 101 C 1 HETATM 30 O O2P FMN . . . I 2 43.953 32.877 48.221 0.7 85.01 ? O2P FMN 101 C 1 HETATM 31 O O3P FMN . . . I 2 42.089 33.055 49.85 0.7 85.53 ? O3P FMN 101 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #