data_2V4O # _model_server_result.job_id DxTgnZbC9VxJlgVDO_47pw _model_server_result.datetime_utc '2024-11-08 13:49:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1255}' # _entry.id 2V4O # _exptl.entry_id 2V4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.93 _cell.angle_gamma 90 _cell.entry_id 2V4O _cell.length_a 161.081 _cell.length_b 95.299 _cell.length_c 94.572 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,L,M 1 1 C,D,H,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 22 A ASP 8 1_555 E MG MG . A MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc2 A OD1 ASP 23 A ASP 9 1_555 E MG MG . A MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 A OG SER 53 A SER 39 1_555 E MG MG . A MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc4 A ND2 ASN 106 A ASN 92 1_555 E MG MG . A MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 E MG MG . A MG 1254 1_555 F O3 PO4 . A PO4 1255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc6 B OD2 ASP 22 B ASP 8 1_555 G MG MG . B MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 B OD1 ASP 23 B ASP 9 1_555 G MG MG . B MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 B OG SER 53 B SER 39 1_555 G MG MG . B MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc9 B ND2 ASN 106 B ASN 92 1_555 G MG MG . B MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 C OD2 ASP 22 C ASP 8 1_555 H MG MG . C MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc11 C OD1 ASP 23 C ASP 9 1_555 H MG MG . C MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc12 C OG SER 53 C SER 39 1_555 H MG MG . C MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc13 C ND2 ASN 106 C ASN 92 1_555 H MG MG . C MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc14 D OD2 ASP 22 D ASP 8 1_555 I MG MG . D MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc15 D OD1 ASP 23 D ASP 9 1_555 I MG MG . D MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc16 D OG SER 53 D SER 39 1_555 I MG MG . D MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc17 D ND2 ASN 106 D ASN 92 1_555 I MG MG . D MG 1254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc18 I MG MG . D MG 1254 1_555 K O3 PO4 . D PO4 1256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2V4O _atom_sites.fract_transf_matrix[1][1] 0.006208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000975 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 1254 1254 MG MG . F 3 PO4 A 1 1255 1255 PO4 PO4 . G 2 MG B 1 1254 1254 MG MG . H 2 MG C 1 1254 1254 MG MG . I 2 MG D 1 1254 1254 MG MG . J 4 GOL D 1 1255 1255 GOL GOL . K 3 PO4 D 1 1256 1256 PO4 PO4 . L 5 HOH A 1 2001 2001 HOH HOH . L 5 HOH A 2 2002 2002 HOH HOH . L 5 HOH A 3 2003 2003 HOH HOH . L 5 HOH A 4 2004 2004 HOH HOH . L 5 HOH A 5 2005 2005 HOH HOH . L 5 HOH A 6 2006 2006 HOH HOH . L 5 HOH A 7 2007 2007 HOH HOH . L 5 HOH A 8 2008 2008 HOH HOH . L 5 HOH A 9 2009 2009 HOH HOH . L 5 HOH A 10 2010 2010 HOH HOH . L 5 HOH A 11 2011 2011 HOH HOH . L 5 HOH A 12 2012 2012 HOH HOH . L 5 HOH A 13 2013 2013 HOH HOH . L 5 HOH A 14 2014 2014 HOH HOH . M 5 HOH B 1 2001 2001 HOH HOH . M 5 HOH B 2 2002 2002 HOH HOH . M 5 HOH B 3 2003 2003 HOH HOH . M 5 HOH B 4 2004 2004 HOH HOH . M 5 HOH B 5 2005 2005 HOH HOH . M 5 HOH B 6 2006 2006 HOH HOH . M 5 HOH B 7 2007 2007 HOH HOH . M 5 HOH B 8 2008 2008 HOH HOH . M 5 HOH B 9 2009 2009 HOH HOH . M 5 HOH B 10 2010 2010 HOH HOH . M 5 HOH B 11 2011 2011 HOH HOH . N 5 HOH C 1 2001 2001 HOH HOH . N 5 HOH C 2 2002 2002 HOH HOH . N 5 HOH C 3 2003 2003 HOH HOH . N 5 HOH C 4 2004 2004 HOH HOH . N 5 HOH C 5 2005 2005 HOH HOH . N 5 HOH C 6 2006 2006 HOH HOH . N 5 HOH C 7 2007 2007 HOH HOH . N 5 HOH C 8 2008 2008 HOH HOH . N 5 HOH C 9 2009 2009 HOH HOH . N 5 HOH C 10 2010 2010 HOH HOH . N 5 HOH C 11 2011 2011 HOH HOH . N 5 HOH C 12 2012 2012 HOH HOH . N 5 HOH C 13 2013 2013 HOH HOH . N 5 HOH C 14 2014 2014 HOH HOH . N 5 HOH C 15 2015 2015 HOH HOH . N 5 HOH C 16 2016 2016 HOH HOH . N 5 HOH C 17 2017 2017 HOH HOH . N 5 HOH C 18 2018 2018 HOH HOH . N 5 HOH C 19 2019 2019 HOH HOH . N 5 HOH C 20 2020 2020 HOH HOH . N 5 HOH C 21 2021 2021 HOH HOH . N 5 HOH C 22 2022 2022 HOH HOH . O 5 HOH D 1 2001 2001 HOH HOH . O 5 HOH D 2 2002 2002 HOH HOH . O 5 HOH D 3 2003 2003 HOH HOH . O 5 HOH D 4 2004 2004 HOH HOH . O 5 HOH D 5 2005 2005 HOH HOH . O 5 HOH D 6 2006 2006 HOH HOH . O 5 HOH D 7 2007 2007 HOH HOH . O 5 HOH D 8 2008 2008 HOH HOH . O 5 HOH D 9 2009 2009 HOH HOH . O 5 HOH D 10 2010 2010 HOH HOH . O 5 HOH D 11 2011 2011 HOH HOH . O 5 HOH D 12 2012 2012 HOH HOH . O 5 HOH D 13 2013 2013 HOH HOH . O 5 HOH D 14 2014 2014 HOH HOH . O 5 HOH D 15 2015 2015 HOH HOH . O 5 HOH D 16 2016 2016 HOH HOH . O 5 HOH D 17 2017 2017 HOH HOH . O 5 HOH D 18 2018 2018 HOH HOH . O 5 HOH D 19 2019 2019 HOH HOH . O 5 HOH D 20 2020 2020 HOH HOH . O 5 HOH D 21 2021 2021 HOH HOH . O 5 HOH D 22 2022 2022 HOH HOH . O 5 HOH D 23 2023 2023 HOH HOH . O 5 HOH D 24 2024 2024 HOH HOH . O 5 HOH D 25 2025 2025 HOH HOH . O 5 HOH D 26 2026 2026 HOH HOH . O 5 HOH D 27 2027 2027 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 4 114.91 71.08 6.462 1 55.99 ? C1 GOL 1255 D 1 HETATM 2 O O1 GOL . . . J 4 113.903 70.321 5.796 1 54.01 ? O1 GOL 1255 D 1 HETATM 3 C C2 GOL . . . J 4 116.308 70.951 5.81 1 55.98 ? C2 GOL 1255 D 1 HETATM 4 O O2 GOL . . . J 4 116.689 69.61 5.471 1 57.7 ? O2 GOL 1255 D 1 HETATM 5 C C3 GOL . . . J 4 117.409 71.857 6.419 1 54.44 ? C3 GOL 1255 D 1 HETATM 6 O O3 GOL . . . J 4 118.238 71.357 7.465 1 49.13 ? O3 GOL 1255 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #