data_2V4Y
#
_model_server_result.job_id            rBsu0SAdCbyQPEVnRHnXhg 
_model_server_result.datetime_utc      '2025-03-04 15:01:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v4y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1242}' 
#
_entry.id    2V4Y 
#
_exptl.entry_id    2V4Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2V4Y 
_cell.length_a            66.28 
_cell.length_b            145.78 
_cell.length_c            146.6 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V4Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     2V4Y 
_atom_sites.fract_transf_matrix[1][1]    0.015088 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00686 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006821 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GTP A 1 1242 1242 GTP GTP . 
H 2 GTP A 1 1243 1243 GTP GTP . 
I 2 GTP B 1 1242 1242 GTP GTP . 
J 2 GTP B 1 1243 1243 GTP GTP . 
K 2 GTP C 1 1242 1242 GTP GTP . 
L 2 GTP C 1 1243 1243 GTP GTP . 
M 2 GTP D 1 1242 1242 GTP GTP . 
N 2 GTP D 1 1243 1243 GTP GTP . 
O 2 GTP E 1 1242 1242 GTP GTP . 
P 2 GTP E 1 1243 1243 GTP GTP . 
Q 2 GTP F 1 1242 1242 GTP GTP . 
R 2 GTP F 1 1243 1243 GTP GTP . 
S 3 HOH A 1 2001 2001 HOH HOH . 
T 3 HOH B 1 2001 2001 HOH HOH . 
T 3 HOH B 2 2002 2002 HOH HOH . 
T 3 HOH B 3 2003 2003 HOH HOH . 
U 3 HOH C 1 2001 2001 HOH HOH . 
U 3 HOH C 2 2002 2002 HOH HOH . 
U 3 HOH C 3 2003 2003 HOH HOH . 
V 3 HOH D 1 2001 2001 HOH HOH . 
V 3 HOH D 2 2002 2002 HOH HOH . 
V 3 HOH D 3 2003 2003 HOH HOH . 
W 3 HOH E 1 2001 2001 HOH HOH . 
W 3 HOH E 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . I 2 5.093 -2.911 19.274 1 126.1 ? PG GTP 1242 B 1 
HETATM 2 O O1G GTP . . . I 2 4.241 -1.811 18.666 1 78.36 ? O1G GTP 1242 B 1 
HETATM 3 O O2G GTP . . . I 2 5.278 -4.101 18.355 1 90.64 ? O2G GTP 1242 B 1 
HETATM 4 O O3G GTP . . . I 2 6.463 -2.362 19.619 1 108.33 ? O3G GTP 1242 B 1 
HETATM 5 O O3B GTP . . . I 2 4.355 -3.44 20.598 1 91.9 ? O3B GTP 1242 B 1 
HETATM 6 P PB GTP . . . I 2 3.357 -2.458 21.386 1 103.37 ? PB GTP 1242 B 1 
HETATM 7 O O1B GTP . . . I 2 3.585 -2.679 22.866 1 72.99 ? O1B GTP 1242 B 1 
HETATM 8 O O2B GTP . . . I 2 3.626 -1.027 20.981 1 77.39 ? O2B GTP 1242 B 1 
HETATM 9 O O3A GTP . . . I 2 1.834 -2.832 20.979 1 100.8 ? O3A GTP 1242 B 1 
HETATM 10 P PA GTP . . . I 2 1.318 -3.429 19.567 1 64.51 ? PA GTP 1242 B 1 
HETATM 11 O O1A GTP . . . I 2 2.001 -2.817 18.376 1 77.22 ? O1A GTP 1242 B 1 
HETATM 12 O O2A GTP . . . I 2 -0.174 -3.207 19.457 1 60.62 ? O2A GTP 1242 B 1 
HETATM 13 O O5' GTP . . . I 2 1.659 -4.995 19.63 1 71.47 ? O5' GTP 1242 B 1 
HETATM 14 C C5' GTP . . . I 2 1.848 -5.712 20.825 1 57.46 ? C5' GTP 1242 B 1 
HETATM 15 C C4' GTP . . . I 2 2.364 -7.093 20.448 1 60.51 ? C4' GTP 1242 B 1 
HETATM 16 O O4' GTP . . . I 2 1.35 -7.785 19.747 1 52.89 ? O4' GTP 1242 B 1 
HETATM 17 C C3' GTP . . . I 2 3.535 -7.065 19.481 1 66.67 ? C3' GTP 1242 B 1 
HETATM 18 O O3' GTP . . . I 2 4.782 -6.902 20.114 1 71.52 ? O3' GTP 1242 B 1 
HETATM 19 C C2' GTP . . . I 2 3.392 -8.408 18.801 1 61.85 ? C2' GTP 1242 B 1 
HETATM 20 O O2' GTP . . . I 2 3.84 -9.44 19.647 1 59.13 ? O2' GTP 1242 B 1 
HETATM 21 C C1' GTP . . . I 2 1.891 -8.556 18.692 1 53.4 ? C1' GTP 1242 B 1 
HETATM 22 N N9 GTP . . . I 2 1.488 -8.013 17.382 1 38.45 ? N9 GTP 1242 B 1 
HETATM 23 C C8 GTP . . . I 2 0.744 -6.889 17.162 1 57.17 ? C8 GTP 1242 B 1 
HETATM 24 N N7 GTP . . . I 2 0.574 -6.728 15.832 1 54.9 ? N7 GTP 1242 B 1 
HETATM 25 C C5 GTP . . . I 2 1.183 -7.751 15.194 1 58.1 ? C5 GTP 1242 B 1 
HETATM 26 C C6 GTP . . . I 2 1.303 -8.08 13.845 1 62.12 ? C6 GTP 1242 B 1 
HETATM 27 O O6 GTP . . . I 2 0.802 -7.36 12.979 1 59.24 ? O6 GTP 1242 B 1 
HETATM 28 N N1 GTP . . . I 2 2.003 -9.218 13.485 1 75.05 ? N1 GTP 1242 B 1 
HETATM 29 C C2 GTP . . . I 2 2.568 -10.018 14.461 1 63.48 ? C2 GTP 1242 B 1 
HETATM 30 N N2 GTP . . . I 2 3.236 -11.115 14.124 1 63.78 ? N2 GTP 1242 B 1 
HETATM 31 N N3 GTP . . . I 2 2.436 -9.686 15.793 1 60.11 ? N3 GTP 1242 B 1 
HETATM 32 C C4 GTP . . . I 2 1.759 -8.568 16.159 1 56.15 ? C4 GTP 1242 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#