data_2V4Y # _model_server_result.job_id U2B1yDp22miXP2djEqYSSg _model_server_result.datetime_utc '2024-12-27 19:36:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1243}' # _entry.id 2V4Y # _exptl.entry_id 2V4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V4Y _cell.length_a 66.28 _cell.length_b 145.78 _cell.length_c 146.6 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 2V4Y _atom_sites.fract_transf_matrix[1][1] 0.015088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GTP A 1 1242 1242 GTP GTP . H 2 GTP A 1 1243 1243 GTP GTP . I 2 GTP B 1 1242 1242 GTP GTP . J 2 GTP B 1 1243 1243 GTP GTP . K 2 GTP C 1 1242 1242 GTP GTP . L 2 GTP C 1 1243 1243 GTP GTP . M 2 GTP D 1 1242 1242 GTP GTP . N 2 GTP D 1 1243 1243 GTP GTP . O 2 GTP E 1 1242 1242 GTP GTP . P 2 GTP E 1 1243 1243 GTP GTP . Q 2 GTP F 1 1242 1242 GTP GTP . R 2 GTP F 1 1243 1243 GTP GTP . S 3 HOH A 1 2001 2001 HOH HOH . T 3 HOH B 1 2001 2001 HOH HOH . T 3 HOH B 2 2002 2002 HOH HOH . T 3 HOH B 3 2003 2003 HOH HOH . U 3 HOH C 1 2001 2001 HOH HOH . U 3 HOH C 2 2002 2002 HOH HOH . U 3 HOH C 3 2003 2003 HOH HOH . V 3 HOH D 1 2001 2001 HOH HOH . V 3 HOH D 2 2002 2002 HOH HOH . V 3 HOH D 3 2003 2003 HOH HOH . W 3 HOH E 1 2001 2001 HOH HOH . W 3 HOH E 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . J 2 -5.731 7.014 -5.227 1 97.2 ? PG GTP 1243 B 1 HETATM 2 O O1G GTP . . . J 2 -7.311 7.257 -5 1 60.5 ? O1G GTP 1243 B 1 HETATM 3 O O2G GTP . . . J 2 -4.968 8.276 -4.88 1 99.73 ? O2G GTP 1243 B 1 HETATM 4 O O3G GTP . . . J 2 -5.41 6.591 -6.646 1 83.92 ? O3G GTP 1243 B 1 HETATM 5 O O3B GTP . . . J 2 -5.317 5.878 -4.153 1 95.07 ? O3B GTP 1243 B 1 HETATM 6 P PB GTP . . . J 2 -5.426 4.277 -4.368 1 88.96 ? PB GTP 1243 B 1 HETATM 7 O O1B GTP . . . J 2 -6.864 3.796 -4.323 1 84.44 ? O1B GTP 1243 B 1 HETATM 8 O O2B GTP . . . J 2 -4.552 3.574 -3.357 1 67.48 ? O2B GTP 1243 B 1 HETATM 9 O O3A GTP . . . J 2 -4.753 3.972 -5.787 1 78.5 ? O3A GTP 1243 B 1 HETATM 10 P PA GTP . . . J 2 -3.174 3.74 -5.715 1 84.83 ? PA GTP 1243 B 1 HETATM 11 O O1A GTP . . . J 2 -2.932 2.398 -5.075 1 63.46 ? O1A GTP 1243 B 1 HETATM 12 O O2A GTP . . . J 2 -2.589 4.843 -4.849 1 62.61 ? O2A GTP 1243 B 1 HETATM 13 O O5' GTP . . . J 2 -2.602 3.756 -7.115 1 105.71 ? O5' GTP 1243 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 13 #