data_2V53 # _model_server_result.job_id PdVolU7DuPXuzt7xqgzGLQ _model_server_result.datetime_utc '2024-11-22 01:18:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 2V53 # _exptl.entry_id 2V53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V53 _cell.length_a 89.79 _cell.length_b 89.79 _cell.length_c 127.1 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 401 NAG 3 n E NAG 2 E 2 NAG A 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 55 1_555 A SG CYS 18 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 12 A CYS 60 1_555 A SG CYS 28 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 30 A CYS 78 1_555 A SG CYS 65 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 36 A CYS 84 1_555 A SG CYS 58 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 47 A CYS 95 1_555 A SG CYS 84 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 90 A CYS 138 1_555 A SG CYS 192 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 200 A CYS 256 1_555 A SG CYS 216 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 51 A ASN 99 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B C PRO 2 B PRO 2 1_555 B N HYP 3 B HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C HYP 3 B HYP 3 1_555 B N GLY 4 B GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C PRO 5 B PRO 5 1_555 B N HYP 6 B HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 B C HYP 6 B HYP 6 1_555 B N GLY 7 B GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C PRO 8 B PRO 8 1_555 B N HYP 9 B HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C HYP 9 B HYP 9 1_555 B N GLY 10 B GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C GLN 17 B GLN 17 1_555 B N HYP 18 B HYP 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 B C HYP 18 B HYP 18 1_555 B N GLY 19 B GLY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale10 B C PHE 23 B PHE 23 1_555 B N HYP 24 B HYP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C HYP 24 B HYP 24 1_555 B N GLY 25 B GLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale12 B C PRO 29 B PRO 29 1_555 B N HYP 30 B HYP 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C HYP 30 B HYP 30 1_555 B N GLY 31 B GLY 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 B C ALA 32 B ALA 32 1_555 B N HYP 33 B HYP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 C C PRO 2 C PRO 2 1_555 C N HYP 3 C HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 C C HYP 3 C HYP 3 1_555 C N GLY 4 C GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 C C PRO 5 C PRO 5 1_555 C N HYP 6 C HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 C C HYP 6 C HYP 6 1_555 C N GLY 7 C GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 C C PRO 8 C PRO 8 1_555 C N HYP 9 C HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 C C HYP 9 C HYP 9 1_555 C N GLY 10 C GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 C C GLN 17 C GLN 17 1_555 C N HYP 18 C HYP 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale22 C C HYP 18 C HYP 18 1_555 C N GLY 19 C GLY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale23 C C PHE 23 C PHE 23 1_555 C N HYP 24 C HYP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 C C HYP 24 C HYP 24 1_555 C N GLY 25 C GLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale25 C C PRO 29 C PRO 29 1_555 C N HYP 30 C HYP 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 C C HYP 30 C HYP 30 1_555 C N GLY 31 C GLY 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale27 C C ALA 32 C ALA 32 1_555 C N HYP 33 C HYP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale28 D C PRO 2 D PRO 2 1_555 D N HYP 3 D HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 D C HYP 3 D HYP 3 1_555 D N GLY 4 D GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 D C PRO 5 D PRO 5 1_555 D N HYP 6 D HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale31 D C HYP 6 D HYP 6 1_555 D N GLY 7 D GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale32 D C PRO 8 D PRO 8 1_555 D N HYP 9 D HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 D C HYP 9 D HYP 9 1_555 D N GLY 10 D GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale34 D C GLN 17 D GLN 17 1_555 D N HYP 18 D HYP 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale35 D C HYP 18 D HYP 18 1_555 D N GLY 19 D GLY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale36 D C PHE 23 D PHE 23 1_555 D N HYP 24 D HYP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale37 D C HYP 24 D HYP 24 1_555 D N GLY 25 D GLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale38 D C PRO 29 D PRO 29 1_555 D N HYP 30 D HYP 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale39 D C HYP 30 D HYP 30 1_555 D N GLY 31 D GLY 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale40 D C ALA 32 D ALA 32 1_555 D N HYP 33 D HYP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale41 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A OD1 ASP 166 A ASP 222 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc2 A O PRO 169 A PRO 225 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc3 A OD2 ASP 171 A ASP 227 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc4 A O TYR 173 A TYR 229 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc5 A OE1 GLU 178 A GLU 234 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc6 A OE2 GLU 178 A GLU 234 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2V53 _atom_sites.fract_transf_matrix[1][1] 0.011137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 CA A 1 301 301 CA CA . G 5 SO4 D 1 401 401 SO4 SO4 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 10.923 _atom_site.Cartn_y 28.236 _atom_site.Cartn_z 33.17 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 83.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #