data_2V55
#
_model_server_result.job_id            viVkcgA_wSw_xQOZ6sq4eg 
_model_server_result.datetime_utc      '2025-02-05 07:44:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1201}' 
#
_entry.id    2V55 
#
_exptl.entry_id    2V55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2V55 
_cell.length_a            152.477 
_cell.length_b            152.477 
_cell.length_c            531.274 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 203 A ASN 203 1_555 F MG MG . A MG 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? 
metalc ? metalc2 B OG1 THR 37 B THR 37 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc3 B OG1 THR 55 B THR 55 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc4 G O2G GTP . B GTP 1201 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc5 G O2B GTP . B GTP 1201 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc6 C OD1 ASN 203 C ASN 203 1_555 J MG MG . C MG 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc7 D OG1 THR 37 D THR 37 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc8 D OG1 THR 55 D THR 55 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc9 K O2G GTP . D GTP 1201 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc10 K O2B GTP . D GTP 1201 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 179 n n 
PG O2G GTP sing 180 n n 
PG O3G GTP sing 181 n n 
PG O3B GTP sing 182 n n 
O2G HOG2 GTP sing 183 n n 
O3G HOG3 GTP sing 184 n n 
O3B PB GTP sing 185 n n 
PB O1B GTP doub 186 n n 
PB O2B GTP sing 187 n n 
PB O3A GTP sing 188 n n 
O2B HOB2 GTP sing 189 n n 
O3A PA GTP sing 190 n n 
PA O1A GTP doub 191 n n 
PA O2A GTP sing 192 n n 
PA O5' GTP sing 193 n n 
O2A HOA2 GTP sing 194 n n 
O5' C5' GTP sing 195 n n 
C5' C4' GTP sing 196 n n 
C5' H5' GTP sing 197 n n 
C5' "H5''" GTP sing 198 n n 
C4' O4' GTP sing 199 n n 
C4' C3' GTP sing 200 n n 
C4' H4' GTP sing 201 n n 
O4' C1' GTP sing 202 n n 
C3' O3' GTP sing 203 n n 
C3' C2' GTP sing 204 n n 
C3' H3' GTP sing 205 n n 
O3' HO3' GTP sing 206 n n 
C2' O2' GTP sing 207 n n 
C2' C1' GTP sing 208 n n 
C2' H2' GTP sing 209 n n 
O2' HO2' GTP sing 210 n n 
C1' N9 GTP sing 211 n n 
C1' H1' GTP sing 212 n n 
N9 C8 GTP sing 213 n y 
N9 C4 GTP sing 214 n y 
C8 N7 GTP doub 215 n y 
C8 H8 GTP sing 216 n n 
N7 C5 GTP sing 217 n y 
C5 C6 GTP sing 218 n n 
C5 C4 GTP doub 219 n y 
C6 O6 GTP doub 220 n n 
C6 N1 GTP sing 221 n n 
N1 C2 GTP sing 222 n n 
N1 HN1 GTP sing 223 n n 
C2 N2 GTP sing 224 n n 
C2 N3 GTP doub 225 n n 
N2 HN21 GTP sing 226 n n 
N2 HN22 GTP sing 227 n n 
N3 C4 GTP sing 228 n n 
#
_atom_sites.entry_id                     2V55 
_atom_sites.fract_transf_matrix[1][1]    0.006558 
_atom_sites.fract_transf_matrix[1][2]    0.003786 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ANP A 1 1480 1480 ANP ANP . 
F 4 MG A 1 1481 1481 MG MG . 
G 5 GTP B 1 1201 1201 GTP GTP . 
H 4 MG B 1 1202 1202 MG MG . 
I 3 ANP C 1 1480 1480 ANP ANP . 
J 4 MG C 1 1481 1481 MG MG . 
K 5 GTP D 1 1201 1201 GTP GTP . 
L 4 MG D 1 1202 1202 MG MG . 
M 6 SO4 D 1 1203 1203 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . G 5 -44.166 76.973 5.548 1 73.43 ? PG GTP 1201 B 1 
HETATM 2 O O1G GTP . . . G 5 -43.923 78.035 6.595 1 82.23 ? O1G GTP 1201 B 1 
HETATM 3 O O2G GTP . . . G 5 -44.946 75.832 6.165 1 50.19 ? O2G GTP 1201 B 1 
HETATM 4 O O3G GTP . . . G 5 -44.91 77.601 4.402 1 72.23 ? O3G GTP 1201 B 1 
HETATM 5 O O3B GTP . . . G 5 -42.747 76.476 4.989 1 93.92 ? O3B GTP 1201 B 1 
HETATM 6 P PB GTP . . . G 5 -42.408 74.916 5.063 1 55.78 ? PB GTP 1201 B 1 
HETATM 7 O O1B GTP . . . G 5 -41.092 74.773 5.766 1 50.78 ? O1B GTP 1201 B 1 
HETATM 8 O O2B GTP . . . G 5 -43.493 74.172 5.804 1 49.93 ? O2B GTP 1201 B 1 
HETATM 9 O O3A GTP . . . G 5 -42.207 74.446 3.532 1 115.18 ? O3A GTP 1201 B 1 
HETATM 10 P PA GTP . . . G 5 -41.823 72.909 3.24 1 69.94 ? PA GTP 1201 B 1 
HETATM 11 O O1A GTP . . . G 5 -43.019 72.18 2.634 1 51.49 ? O1A GTP 1201 B 1 
HETATM 12 O O2A GTP . . . G 5 -41.396 72.292 4.544 1 50.47 ? O2A GTP 1201 B 1 
HETATM 13 O O5' GTP . . . G 5 -40.548 72.851 2.247 1 52.71 ? O5' GTP 1201 B 1 
HETATM 14 C C5' GTP . . . G 5 -40.003 73.949 1.554 1 54.02 ? C5' GTP 1201 B 1 
HETATM 15 C C4' GTP . . . G 5 -39.483 73.449 0.202 1 58.77 ? C4' GTP 1201 B 1 
HETATM 16 O O4' GTP . . . G 5 -38.111 73.172 0.36 1 58.29 ? O4' GTP 1201 B 1 
HETATM 17 C C3' GTP . . . G 5 -40.142 72.155 -0.285 1 63.49 ? C3' GTP 1201 B 1 
HETATM 18 O O3' GTP . . . G 5 -40.828 72.33 -1.505 1 63.3 ? O3' GTP 1201 B 1 
HETATM 19 C C2' GTP . . . G 5 -39.019 71.207 -0.609 1 71.96 ? C2' GTP 1201 B 1 
HETATM 20 O O2' GTP . . . G 5 -38.981 71.074 -2.012 1 85.23 ? O2' GTP 1201 B 1 
HETATM 21 C C1' GTP . . . G 5 -37.757 71.874 -0.089 1 70.58 ? C1' GTP 1201 B 1 
HETATM 22 N N9 GTP . . . G 5 -37.262 71.118 1.076 1 70.27 ? N9 GTP 1201 B 1 
HETATM 23 C C8 GTP . . . G 5 -37.916 70.998 2.273 1 80.23 ? C8 GTP 1201 B 1 
HETATM 24 N N7 GTP . . . G 5 -37.154 70.258 3.111 1 94.28 ? N7 GTP 1201 B 1 
HETATM 25 C C5 GTP . . . G 5 -36.01 69.931 2.473 1 88.7 ? C5 GTP 1201 B 1 
HETATM 26 C C6 GTP . . . G 5 -34.902 69.206 2.877 1 94.1 ? C6 GTP 1201 B 1 
HETATM 27 O O6 GTP . . . G 5 -34.871 68.738 4.018 1 117.36 ? O6 GTP 1201 B 1 
HETATM 28 N N1 GTP . . . G 5 -33.849 69.02 2.003 1 62.17 ? N1 GTP 1201 B 1 
HETATM 29 C C2 GTP . . . G 5 -33.909 69.558 0.74 1 55.57 ? C2 GTP 1201 B 1 
HETATM 30 N N2 GTP . . . G 5 -32.907 69.378 -0.111 1 56.96 ? N2 GTP 1201 B 1 
HETATM 31 N N3 GTP . . . G 5 -35.012 70.279 0.353 1 57.99 ? N3 GTP 1201 B 1 
HETATM 32 C C4 GTP . . . G 5 -36.054 70.467 1.199 1 69.36 ? C4 GTP 1201 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#