data_2V55 # _model_server_result.job_id hZ_7bD2iahhqCRerWbSdeA _model_server_result.datetime_utc '2025-02-05 07:50:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1480}' # _entry.id 2V55 # _exptl.entry_id 2V55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2V55 _cell.length_a 152.477 _cell.length_b 152.477 _cell.length_c 531.274 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 203 A ASN 203 1_555 F MG MG . A MG 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc2 B OG1 THR 37 B THR 37 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 B OG1 THR 55 B THR 55 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc4 G O2G GTP . B GTP 1201 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc5 G O2B GTP . B GTP 1201 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc6 C OD1 ASN 203 C ASN 203 1_555 J MG MG . C MG 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc7 D OG1 THR 37 D THR 37 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc8 D OG1 THR 55 D THR 55 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc9 K O2G GTP . D GTP 1201 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc10 K O2B GTP . D GTP 1201 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2V55 _atom_sites.fract_transf_matrix[1][1] 0.006558 _atom_sites.fract_transf_matrix[1][2] 0.003786 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 1480 1480 ANP ANP . F 4 MG A 1 1481 1481 MG MG . G 5 GTP B 1 1201 1201 GTP GTP . H 4 MG B 1 1202 1202 MG MG . I 3 ANP C 1 1480 1480 ANP ANP . J 4 MG C 1 1481 1481 MG MG . K 5 GTP D 1 1201 1201 GTP GTP . L 4 MG D 1 1202 1202 MG MG . M 6 SO4 D 1 1203 1203 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 -24.181 50.508 36.496 1 269.37 ? PG ANP 1480 A 1 HETATM 2 O O1G ANP . . . E 3 -25.08 51.662 36.612 1 265 ? O1G ANP 1480 A 1 HETATM 3 O O2G ANP . . . E 3 -25.067 49.156 36.17 1 217.78 ? O2G ANP 1480 A 1 HETATM 4 O O3G ANP . . . E 3 -23.132 50.766 35.243 1 137.71 ? O3G ANP 1480 A 1 HETATM 5 P PB ANP . . . E 3 -23.293 48.626 38.442 1 253.62 ? PB ANP 1480 A 1 HETATM 6 O O1B ANP . . . E 3 -24.711 48.236 39.192 1 150.54 ? O1B ANP 1480 A 1 HETATM 7 O O2B ANP . . . E 3 -23.1 47.783 37.265 1 251.61 ? O2B ANP 1480 A 1 HETATM 8 N N3B ANP . . . E 3 -23.304 50.273 37.953 1 252.07 ? N3B ANP 1480 A 1 HETATM 9 P PA ANP . . . E 3 -20.891 47.22 39.233 1 162.65 ? PA ANP 1480 A 1 HETATM 10 O O1A ANP . . . E 3 -20.77 46.942 37.804 1 150.53 ? O1A ANP 1480 A 1 HETATM 11 O O2A ANP . . . E 3 -21.241 45.818 40.032 1 141.91 ? O2A ANP 1480 A 1 HETATM 12 O O3A ANP . . . E 3 -22.054 48.365 39.508 1 224.3 ? O3A ANP 1480 A 1 HETATM 13 O O5' ANP . . . E 3 -19.466 47.857 39.787 1 176.16 ? O5' ANP 1480 A 1 HETATM 14 C C5' ANP . . . E 3 -19.314 49.259 39.805 1 173.11 ? C5' ANP 1480 A 1 HETATM 15 C C4' ANP . . . E 3 -18.091 49.635 40.659 1 160.72 ? C4' ANP 1480 A 1 HETATM 16 O O4' ANP . . . E 3 -17.9 48.622 41.695 1 150.75 ? O4' ANP 1480 A 1 HETATM 17 C C3' ANP . . . E 3 -16.809 49.7 39.822 1 147.21 ? C3' ANP 1480 A 1 HETATM 18 O O3' ANP . . . E 3 -16.566 51.01 39.357 1 146.39 ? O3' ANP 1480 A 1 HETATM 19 C C2' ANP . . . E 3 -15.743 49.265 40.796 1 135.77 ? C2' ANP 1480 A 1 HETATM 20 O O2' ANP . . . E 3 -15.197 50.394 41.441 1 114.12 ? O2' ANP 1480 A 1 HETATM 21 C C1' ANP . . . E 3 -16.469 48.338 41.795 1 141.28 ? C1' ANP 1480 A 1 HETATM 22 N N9 ANP . . . E 3 -16.181 46.901 41.591 1 122.64 ? N9 ANP 1480 A 1 HETATM 23 C C8 ANP . . . E 3 -17.103 45.929 40.913 1 113.02 ? C8 ANP 1480 A 1 HETATM 24 N N7 ANP . . . E 3 -16.465 44.611 40.877 1 99.06 ? N7 ANP 1480 A 1 HETATM 25 C C5 ANP . . . E 3 -15.147 44.726 41.53 1 84.92 ? C5 ANP 1480 A 1 HETATM 26 C C6 ANP . . . E 3 -14.061 43.704 41.782 1 81.85 ? C6 ANP 1480 A 1 HETATM 27 N N6 ANP . . . E 3 -14.228 42.329 41.335 1 76.02 ? N6 ANP 1480 A 1 HETATM 28 N N1 ANP . . . E 3 -12.837 44.092 42.46 1 84.07 ? N1 ANP 1480 A 1 HETATM 29 C C2 ANP . . . E 3 -12.657 45.52 42.91 1 81.58 ? C2 ANP 1480 A 1 HETATM 30 N N3 ANP . . . E 3 -13.722 46.532 42.664 1 82.4 ? N3 ANP 1480 A 1 HETATM 31 C C4 ANP . . . E 3 -14.972 46.143 41.968 1 92.6 ? C4 ANP 1480 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #