data_2V55
#
_model_server_result.job_id            vpN9FOZCOod-1KWEsbzVyA 
_model_server_result.datetime_utc      '2025-02-05 07:51:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1480}' 
#
_entry.id    2V55 
#
_exptl.entry_id    2V55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2V55 
_cell.length_a            152.477 
_cell.length_b            152.477 
_cell.length_c            531.274 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 203 A ASN 203 1_555 F MG MG . A MG 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? 
metalc ? metalc2 B OG1 THR 37 B THR 37 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc3 B OG1 THR 55 B THR 55 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc4 G O2G GTP . B GTP 1201 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc5 G O2B GTP . B GTP 1201 1_555 H MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc6 C OD1 ASN 203 C ASN 203 1_555 J MG MG . C MG 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc7 D OG1 THR 37 D THR 37 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc8 D OG1 THR 55 D THR 55 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc9 K O2G GTP . D GTP 1201 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc10 K O2B GTP . D GTP 1201 1_555 L MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     2V55 
_atom_sites.fract_transf_matrix[1][1]    0.006558 
_atom_sites.fract_transf_matrix[1][2]    0.003786 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ANP A 1 1480 1480 ANP ANP . 
F 4 MG A 1 1481 1481 MG MG . 
G 5 GTP B 1 1201 1201 GTP GTP . 
H 4 MG B 1 1202 1202 MG MG . 
I 3 ANP C 1 1480 1480 ANP ANP . 
J 4 MG C 1 1481 1481 MG MG . 
K 5 GTP D 1 1201 1201 GTP GTP . 
L 4 MG D 1 1202 1202 MG MG . 
M 6 SO4 D 1 1203 1203 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . I 3 19.812 24.36 54.029 1 269.21 ? PG ANP 1480 C 1 
HETATM 2 O O1G ANP . . . I 3 21.257 24.155 53.919 1 265.22 ? O1G ANP 1480 C 1 
HETATM 3 O O2G ANP . . . I 3 19.077 22.899 54.242 1 217.55 ? O2G ANP 1480 C 1 
HETATM 4 O O3G ANP . . . I 3 19.492 25.314 55.344 1 138.29 ? O3G ANP 1480 C 1 
HETATM 5 P PB ANP . . . I 3 17.808 24.335 52.038 1 253.12 ? PB ANP 1480 C 1 
HETATM 6 O O1B ANP . . . I 3 18.19 22.959 51.211 1 149.52 ? O1B ANP 1480 C 1 
HETATM 7 O O2B ANP . . . I 3 16.962 24.01 53.184 1 252.96 ? O2B ANP 1480 C 1 
HETATM 8 N N3B ANP . . . I 3 19.222 25.112 52.606 1 251.12 ? N3B ANP 1480 C 1 
HETATM 9 P PA ANP . . . I 3 15.418 25.784 51.3 1 158.44 ? PA ANP 1480 C 1 
HETATM 10 O O1A ANP . . . I 3 15.097 25.683 52.721 1 149.65 ? O1A ANP 1480 C 1 
HETATM 11 O O2A ANP . . . I 3 14.38 24.849 50.416 1 139.78 ? O2A ANP 1480 C 1 
HETATM 12 O O3A ANP . . . I 3 16.991 25.354 51.026 1 223.69 ? O3A ANP 1480 C 1 
HETATM 13 O O5' ANP . . . I 3 15.269 27.362 50.848 1 174.12 ? O5' ANP 1480 C 1 
HETATM 14 C C5' ANP . . . I 3 16.413 28.182 50.91 1 172.21 ? C5' ANP 1480 C 1 
HETATM 15 C C4' ANP . . . I 3 16.136 29.483 50.136 1 160.55 ? C4' ANP 1480 C 1 
HETATM 16 O O4' ANP . . . I 3 15.169 29.213 49.075 1 151.59 ? O4' ANP 1480 C 1 
HETATM 17 C C3' ANP . . . I 3 15.533 30.568 51.037 1 147.58 ? C3' ANP 1480 C 1 
HETATM 18 O O3' ANP . . . I 3 16.537 31.402 51.568 1 147.83 ? O3' ANP 1480 C 1 
HETATM 19 C C2' ANP . . . I 3 14.628 31.341 50.112 1 133.46 ? C2' ANP 1480 C 1 
HETATM 20 O O2' ANP . . . I 3 15.345 32.419 49.559 1 112.17 ? O2' ANP 1480 C 1 
HETATM 21 C C1' ANP . . . I 3 14.212 30.325 49.03 1 140.98 ? C1' ANP 1480 C 1 
HETATM 22 N N9 ANP . . . I 3 12.816 29.86 49.174 1 121.11 ? N9 ANP 1480 C 1 
HETATM 23 C C8 ANP . . . I 3 12.416 28.541 49.765 1 114.3 ? C8 ANP 1480 C 1 
HETATM 24 N N7 ANP . . . I 3 10.954 28.441 49.77 1 99.16 ? N7 ANP 1480 C 1 
HETATM 25 C C5 ANP . . . I 3 10.42 29.678 49.176 1 83.58 ? C5 ANP 1480 C 1 
HETATM 26 C C6 ANP . . . I 3 9 30.128 48.919 1 82.19 ? C6 ANP 1480 C 1 
HETATM 27 N N6 ANP . . . I 3 7.884 29.267 49.288 1 77.7 ? N6 ANP 1480 C 1 
HETATM 28 N N1 ANP . . . I 3 8.743 31.419 48.308 1 82.63 ? N1 ANP 1480 C 1 
HETATM 29 C C2 ANP . . . I 3 9.899 32.308 47.932 1 78.71 ? C2 ANP 1480 C 1 
HETATM 30 N N3 ANP . . . I 3 11.297 31.865 48.183 1 81.99 ? N3 ANP 1480 C 1 
HETATM 31 C C4 ANP . . . I 3 11.569 30.554 48.811 1 89.17 ? C4 ANP 1480 C 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#