data_2V59 # _model_server_result.job_id G1UH2WEqCriz5NuyS4IOZA _model_server_result.datetime_utc '2025-03-06 09:56:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1446}' # _entry.id 2V59 # _exptl.entry_id 2V59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.312 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2,6-DIMETHOXYPHENYL)PYRIDO[2,3-D]PYRIMIDINE-2,7-DIAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V59 _cell.length_a 84.19 _cell.length_b 106.203 _cell.length_c 123.055 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H15 N5 O2' _chem_comp.formula_weight 297.312 _chem_comp.id LZK _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2,6-DIMETHOXYPHENYL)PYRIDO[2,3-D]PYRIMIDINE-2,7-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N20 C19 LZK sing 218 n n C19 N17 LZK sing 219 n y C19 N18 LZK doub 220 n y N17 C15 LZK doub 221 n y N18 C16 LZK sing 222 n y C16 C11 LZK doub 223 n y C11 C15 LZK sing 224 n y C11 C5 LZK sing 225 n y C15 N12 LZK sing 226 n y N12 C6 LZK doub 227 n y C6 N13 LZK sing 228 n n C6 C2 LZK sing 229 n y C5 C2 LZK doub 230 n y C2 C1 LZK sing 231 n y C1 C4 LZK sing 232 n y C1 C3 LZK doub 233 n y C4 O1 LZK sing 234 n n C4 C9 LZK doub 235 n y O1 C45 LZK sing 236 n n C3 O7 LZK sing 237 n n C3 C7 LZK sing 238 n y O7 C43 LZK sing 239 n n C7 C14 LZK doub 240 n y C14 C9 LZK sing 241 n y N20 H201 LZK sing 242 n n N20 H202 LZK sing 243 n n C16 H16 LZK sing 244 n n C5 H5 LZK sing 245 n n N13 H131 LZK sing 246 n n N13 H132 LZK sing 247 n n C9 H9 LZK sing 248 n n C45 H451 LZK sing 249 n n C45 H452 LZK sing 250 n n C45 H453 LZK sing 251 n n C7 H7 LZK sing 252 n n C43 H431 LZK sing 253 n n C43 H432 LZK sing 254 n n C43 H433 LZK sing 255 n n C14 H14 LZK sing 256 n n # _atom_sites.entry_id 2V59 _atom_sites.fract_transf_matrix[1][1] 0.011878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LZK A 1 1446 1446 LZK LZK . D 2 LZK B 1 1446 1446 LZK LZK . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . E 3 HOH A 51 2051 2051 HOH HOH . E 3 HOH A 52 2052 2052 HOH HOH . E 3 HOH A 53 2053 2053 HOH HOH . E 3 HOH A 54 2054 2054 HOH HOH . E 3 HOH A 55 2055 2055 HOH HOH . E 3 HOH A 56 2056 2056 HOH HOH . E 3 HOH A 57 2057 2057 HOH HOH . E 3 HOH A 58 2058 2058 HOH HOH . E 3 HOH A 59 2059 2059 HOH HOH . E 3 HOH A 60 2060 2060 HOH HOH . E 3 HOH A 61 2061 2061 HOH HOH . E 3 HOH A 62 2062 2062 HOH HOH . E 3 HOH A 63 2063 2063 HOH HOH . E 3 HOH A 64 2064 2064 HOH HOH . E 3 HOH A 65 2065 2065 HOH HOH . E 3 HOH A 66 2066 2066 HOH HOH . E 3 HOH A 67 2067 2067 HOH HOH . E 3 HOH A 68 2068 2068 HOH HOH . E 3 HOH A 69 2069 2069 HOH HOH . E 3 HOH A 70 2070 2070 HOH HOH . E 3 HOH A 71 2071 2071 HOH HOH . E 3 HOH A 72 2072 2072 HOH HOH . E 3 HOH A 73 2073 2073 HOH HOH . E 3 HOH A 74 2074 2074 HOH HOH . E 3 HOH A 75 2075 2075 HOH HOH . E 3 HOH A 76 2076 2076 HOH HOH . E 3 HOH A 77 2077 2077 HOH HOH . E 3 HOH A 78 2078 2078 HOH HOH . E 3 HOH A 79 2079 2079 HOH HOH . E 3 HOH A 80 2080 2080 HOH HOH . E 3 HOH A 81 2081 2081 HOH HOH . E 3 HOH A 82 2082 2082 HOH HOH . E 3 HOH A 83 2083 2083 HOH HOH . E 3 HOH A 84 2084 2084 HOH HOH . E 3 HOH A 85 2085 2085 HOH HOH . E 3 HOH A 86 2086 2086 HOH HOH . E 3 HOH A 87 2087 2087 HOH HOH . E 3 HOH A 88 2088 2088 HOH HOH . E 3 HOH A 89 2089 2089 HOH HOH . E 3 HOH A 90 2090 2090 HOH HOH . E 3 HOH A 91 2091 2091 HOH HOH . E 3 HOH A 92 2092 2092 HOH HOH . E 3 HOH A 93 2093 2093 HOH HOH . E 3 HOH A 94 2094 2094 HOH HOH . E 3 HOH A 95 2095 2095 HOH HOH . E 3 HOH A 96 2096 2096 HOH HOH . E 3 HOH A 97 2097 2097 HOH HOH . E 3 HOH A 98 2098 2098 HOH HOH . E 3 HOH A 99 2099 2099 HOH HOH . E 3 HOH A 100 2100 2100 HOH HOH . E 3 HOH A 101 2101 2101 HOH HOH . E 3 HOH A 102 2102 2102 HOH HOH . E 3 HOH A 103 2103 2103 HOH HOH . E 3 HOH A 104 2104 2104 HOH HOH . E 3 HOH A 105 2105 2105 HOH HOH . E 3 HOH A 106 2106 2106 HOH HOH . E 3 HOH A 107 2107 2107 HOH HOH . E 3 HOH A 108 2108 2108 HOH HOH . E 3 HOH A 109 2109 2109 HOH HOH . E 3 HOH A 110 2110 2110 HOH HOH . E 3 HOH A 111 2111 2111 HOH HOH . E 3 HOH A 112 2112 2112 HOH HOH . E 3 HOH A 113 2113 2113 HOH HOH . E 3 HOH A 114 2114 2114 HOH HOH . E 3 HOH A 115 2115 2115 HOH HOH . E 3 HOH A 116 2116 2116 HOH HOH . E 3 HOH A 117 2117 2117 HOH HOH . E 3 HOH A 118 2118 2118 HOH HOH . E 3 HOH A 119 2119 2119 HOH HOH . E 3 HOH A 120 2120 2120 HOH HOH . E 3 HOH A 121 2121 2121 HOH HOH . E 3 HOH A 122 2122 2122 HOH HOH . E 3 HOH A 123 2123 2123 HOH HOH . E 3 HOH A 124 2124 2124 HOH HOH . E 3 HOH A 125 2125 2125 HOH HOH . E 3 HOH A 126 2126 2126 HOH HOH . E 3 HOH A 127 2127 2127 HOH HOH . E 3 HOH A 128 2128 2128 HOH HOH . E 3 HOH A 129 2129 2129 HOH HOH . E 3 HOH A 130 2130 2130 HOH HOH . E 3 HOH A 131 2131 2131 HOH HOH . E 3 HOH A 132 2132 2132 HOH HOH . E 3 HOH A 133 2133 2133 HOH HOH . E 3 HOH A 134 2134 2134 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . F 3 HOH B 43 2043 2043 HOH HOH . F 3 HOH B 44 2044 2044 HOH HOH . F 3 HOH B 45 2045 2045 HOH HOH . F 3 HOH B 46 2046 2046 HOH HOH . F 3 HOH B 47 2047 2047 HOH HOH . F 3 HOH B 48 2048 2048 HOH HOH . F 3 HOH B 49 2049 2049 HOH HOH . F 3 HOH B 50 2050 2050 HOH HOH . F 3 HOH B 51 2051 2051 HOH HOH . F 3 HOH B 52 2052 2052 HOH HOH . F 3 HOH B 53 2053 2053 HOH HOH . F 3 HOH B 54 2054 2054 HOH HOH . F 3 HOH B 55 2055 2055 HOH HOH . F 3 HOH B 56 2056 2056 HOH HOH . F 3 HOH B 57 2057 2057 HOH HOH . F 3 HOH B 58 2058 2058 HOH HOH . F 3 HOH B 59 2059 2059 HOH HOH . F 3 HOH B 60 2060 2060 HOH HOH . F 3 HOH B 61 2061 2061 HOH HOH . F 3 HOH B 62 2062 2062 HOH HOH . F 3 HOH B 63 2063 2063 HOH HOH . F 3 HOH B 64 2064 2064 HOH HOH . F 3 HOH B 65 2065 2065 HOH HOH . F 3 HOH B 66 2066 2066 HOH HOH . F 3 HOH B 67 2067 2067 HOH HOH . F 3 HOH B 68 2068 2068 HOH HOH . F 3 HOH B 69 2069 2069 HOH HOH . F 3 HOH B 70 2070 2070 HOH HOH . F 3 HOH B 71 2071 2071 HOH HOH . F 3 HOH B 72 2072 2072 HOH HOH . F 3 HOH B 73 2073 2073 HOH HOH . F 3 HOH B 74 2074 2074 HOH HOH . F 3 HOH B 75 2075 2075 HOH HOH . F 3 HOH B 76 2076 2076 HOH HOH . F 3 HOH B 77 2077 2077 HOH HOH . F 3 HOH B 78 2078 2078 HOH HOH . F 3 HOH B 79 2079 2079 HOH HOH . F 3 HOH B 80 2080 2080 HOH HOH . F 3 HOH B 81 2081 2081 HOH HOH . F 3 HOH B 82 2082 2082 HOH HOH . F 3 HOH B 83 2083 2083 HOH HOH . F 3 HOH B 84 2084 2084 HOH HOH . F 3 HOH B 85 2085 2085 HOH HOH . F 3 HOH B 86 2086 2086 HOH HOH . F 3 HOH B 87 2087 2087 HOH HOH . F 3 HOH B 88 2088 2088 HOH HOH . F 3 HOH B 89 2089 2089 HOH HOH . F 3 HOH B 90 2090 2090 HOH HOH . F 3 HOH B 91 2091 2091 HOH HOH . F 3 HOH B 92 2092 2092 HOH HOH . F 3 HOH B 93 2093 2093 HOH HOH . F 3 HOH B 94 2094 2094 HOH HOH . F 3 HOH B 95 2095 2095 HOH HOH . F 3 HOH B 96 2096 2096 HOH HOH . F 3 HOH B 97 2097 2097 HOH HOH . F 3 HOH B 98 2098 2098 HOH HOH . F 3 HOH B 99 2099 2099 HOH HOH . F 3 HOH B 100 2100 2100 HOH HOH . F 3 HOH B 101 2101 2101 HOH HOH . F 3 HOH B 102 2102 2102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N20 LZK . . . D 2 -15.629 3.727 2.732 1 52.44 ? N20 LZK 1446 B 1 HETATM 2 C C19 LZK . . . D 2 -15.496 3.412 1.424 1 52.44 ? C19 LZK 1446 B 1 HETATM 3 N N17 LZK . . . D 2 -14.546 2.517 1.054 1 52.61 ? N17 LZK 1446 B 1 HETATM 4 N N18 LZK . . . D 2 -16.305 3.991 0.501 1 52.33 ? N18 LZK 1446 B 1 HETATM 5 C C16 LZK . . . D 2 -16.184 3.692 -0.804 1 52.43 ? C16 LZK 1446 B 1 HETATM 6 C C11 LZK . . . D 2 -15.216 2.773 -1.208 1 52.55 ? C11 LZK 1446 B 1 HETATM 7 C C15 LZK . . . D 2 -14.391 2.185 -0.249 1 52.32 ? C15 LZK 1446 B 1 HETATM 8 N N12 LZK . . . D 2 -13.441 1.294 -0.616 1 51.96 ? N12 LZK 1446 B 1 HETATM 9 C C6 LZK . . . D 2 -13.266 0.95 -1.916 1 52.45 ? C6 LZK 1446 B 1 HETATM 10 N N13 LZK . . . D 2 -12.298 0.05 -2.225 1 52.35 ? N13 LZK 1446 B 1 HETATM 11 C C5 LZK . . . D 2 -15.055 2.439 -2.551 1 52.53 ? C5 LZK 1446 B 1 HETATM 12 C C2 LZK . . . D 2 -14.072 1.512 -2.913 1 52.57 ? C2 LZK 1446 B 1 HETATM 13 C C1 LZK . . . D 2 -13.896 1.159 -4.358 1 52.43 ? C1 LZK 1446 B 1 HETATM 14 C C4 LZK . . . D 2 -14.939 0.591 -5.092 1 52.64 ? C4 LZK 1446 B 1 HETATM 15 O O1 LZK . . . D 2 -16.152 0.338 -4.496 1 52.89 ? O1 LZK 1446 B 1 HETATM 16 C C45 LZK . . . D 2 -16.837 -0.905 -4.674 1 53.55 ? C45 LZK 1446 B 1 HETATM 17 C C3 LZK . . . D 2 -12.673 1.426 -4.981 1 52.43 ? C3 LZK 1446 B 1 HETATM 18 O O7 LZK . . . D 2 -11.639 1.983 -4.261 1 52.29 ? O7 LZK 1446 B 1 HETATM 19 C C43 LZK . . . D 2 -10.812 3.012 -4.8 1 51.95 ? C43 LZK 1446 B 1 HETATM 20 C C7 LZK . . . D 2 -12.492 1.108 -6.329 1 52.4 ? C7 LZK 1446 B 1 HETATM 21 C C14 LZK . . . D 2 -13.533 0.54 -7.059 1 52.52 ? C14 LZK 1446 B 1 HETATM 22 C C9 LZK . . . D 2 -14.756 0.286 -6.444 1 52.49 ? C9 LZK 1446 B 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #