data_2V5H # _model_server_result.job_id 6dQ-EJ3RXKyirI1qHcHeEQ _model_server_result.datetime_utc '2024-11-04 22:56:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1293}' # _entry.id 2V5H # _exptl.entry_id 2V5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.166 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-ACETYL-L-GLUTAMATE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.53 _cell.angle_gamma 90 _cell.entry_id 2V5H _cell.length_a 90.379 _cell.length_b 161.027 _cell.length_c 91.562 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 S N N ? 3 U N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O THR 300 B THR 280 1_555 P NA NA . B NA 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc2 R NA NA . C NA 1293 1_555 HA O HOH . C HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc3 D O GLU 297 D GLU 277 1_555 T NA NA . D NA 1295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc4 D O THR 300 D THR 280 1_555 T NA NA . D NA 1295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc5 E O GLU 297 E GLU 277 1_555 W NA NA . E NA 1296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc6 E O THR 300 E THR 280 1_555 W NA NA . E NA 1296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 Y NA NA . F NA 1294 1_555 KA O HOH . F HOH 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc8 Y NA NA . F NA 1294 1_555 KA O HOH . F HOH 2023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? # _chem_comp.formula 'C7 H11 N O5' _chem_comp.formula_weight 189.166 _chem_comp.id NLG _chem_comp.mon_nstd_flag . _chem_comp.name N-ACETYL-L-GLUTAMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C NLG sing 250 n n CA CB NLG sing 251 n n CA N2 NLG sing 252 n n CA HA NLG sing 253 n n C OXT NLG sing 254 n n C O NLG doub 255 n n OXT HXT NLG sing 256 n n CB CG NLG sing 257 n n CB HBC1 NLG sing 258 n n CB HBC2 NLG sing 259 n n CG CD NLG sing 260 n n CG HGC1 NLG sing 261 n n CG HGC2 NLG sing 262 n n CD OE1 NLG doub 263 n n CD OE2 NLG sing 264 n n OE2 HE2 NLG sing 265 n n C7 C8 NLG sing 266 n n C7 O7 NLG doub 267 n n C7 N2 NLG sing 268 n n C8 H8C1 NLG sing 269 n n C8 H8C2 NLG sing 270 n n C8 H8C3 NLG sing 271 n n N2 H2 NLG sing 272 n n # _atom_sites.entry_id 2V5H _atom_sites.fract_transf_matrix[1][1] 0.011065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003284 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 NLG A 1 1292 1292 NLG NLG . N 4 NA A 1 1293 1293 NA NA . O 3 NLG B 1 1297 1297 NLG NLG . P 4 NA B 1 1298 1298 NA NA . Q 3 NLG C 1 1292 1292 NLG NLG . R 4 NA C 1 1293 1293 NA NA . S 3 NLG D 1 1294 1294 NLG NLG . T 4 NA D 1 1295 1295 NA NA . U 3 NLG E 1 1294 1294 NLG NLG . V 5 GOL E 1 1295 1295 GOL GOL . W 4 NA E 1 1296 1296 NA NA . X 3 NLG F 1 1293 1293 NLG NLG . Y 4 NA F 1 1294 1294 NA NA . Z 6 CL G 1 1112 1112 CL CL . AA 6 CL H 1 1109 1109 CL CL . BA 6 CL H 1 1110 1110 CL CL . CA 6 CL J 1 1111 1111 CL CL . DA 6 CL J 1 1112 1112 CL CL . EA 6 CL K 1 1109 1109 CL CL . FA 7 HOH A 1 2001 2001 HOH HOH . FA 7 HOH A 2 2002 2002 HOH HOH . FA 7 HOH A 3 2003 2003 HOH HOH . FA 7 HOH A 4 2004 2004 HOH HOH . FA 7 HOH A 5 2005 2005 HOH HOH . FA 7 HOH A 6 2006 2006 HOH HOH . FA 7 HOH A 7 2007 2007 HOH HOH . FA 7 HOH A 8 2008 2008 HOH HOH . FA 7 HOH A 9 2009 2009 HOH HOH . FA 7 HOH A 10 2010 2010 HOH HOH . FA 7 HOH A 11 2011 2011 HOH HOH . FA 7 HOH A 12 2012 2012 HOH HOH . FA 7 HOH A 13 2013 2013 HOH HOH . FA 7 HOH A 14 2014 2014 HOH HOH . FA 7 HOH A 15 2015 2015 HOH HOH . FA 7 HOH A 16 2016 2016 HOH HOH . FA 7 HOH A 17 2017 2017 HOH HOH . FA 7 HOH A 18 2018 2018 HOH HOH . FA 7 HOH A 19 2019 2019 HOH HOH . FA 7 HOH A 20 2020 2020 HOH HOH . FA 7 HOH A 21 2021 2021 HOH HOH . FA 7 HOH A 22 2022 2022 HOH HOH . FA 7 HOH A 23 2023 2023 HOH HOH . FA 7 HOH A 24 2024 2024 HOH HOH . FA 7 HOH A 25 2025 2025 HOH HOH . FA 7 HOH A 26 2026 2026 HOH HOH . FA 7 HOH A 27 2027 2027 HOH HOH . FA 7 HOH A 28 2028 2028 HOH HOH . FA 7 HOH A 29 2029 2029 HOH HOH . GA 7 HOH B 1 2001 2001 HOH HOH . GA 7 HOH B 2 2002 2002 HOH HOH . GA 7 HOH B 3 2003 2003 HOH HOH . GA 7 HOH B 4 2004 2004 HOH HOH . GA 7 HOH B 5 2005 2005 HOH HOH . GA 7 HOH B 6 2006 2006 HOH HOH . GA 7 HOH B 7 2007 2007 HOH HOH . GA 7 HOH B 8 2008 2008 HOH HOH . GA 7 HOH B 9 2009 2009 HOH HOH . GA 7 HOH B 10 2010 2010 HOH HOH . GA 7 HOH B 11 2011 2011 HOH HOH . GA 7 HOH B 12 2012 2012 HOH HOH . GA 7 HOH B 13 2013 2013 HOH HOH . GA 7 HOH B 14 2014 2014 HOH HOH . GA 7 HOH B 15 2015 2015 HOH HOH . GA 7 HOH B 16 2016 2016 HOH HOH . GA 7 HOH B 17 2017 2017 HOH HOH . GA 7 HOH B 18 2018 2018 HOH HOH . GA 7 HOH B 19 2019 2019 HOH HOH . GA 7 HOH B 20 2020 2020 HOH HOH . GA 7 HOH B 21 2021 2021 HOH HOH . GA 7 HOH B 22 2022 2022 HOH HOH . HA 7 HOH C 1 2001 2001 HOH HOH . HA 7 HOH C 2 2002 2002 HOH HOH . HA 7 HOH C 3 2003 2003 HOH HOH . HA 7 HOH C 4 2004 2004 HOH HOH . HA 7 HOH C 5 2005 2005 HOH HOH . HA 7 HOH C 6 2006 2006 HOH HOH . HA 7 HOH C 7 2007 2007 HOH HOH . HA 7 HOH C 8 2008 2008 HOH HOH . HA 7 HOH C 9 2009 2009 HOH HOH . HA 7 HOH C 10 2010 2010 HOH HOH . HA 7 HOH C 11 2011 2011 HOH HOH . HA 7 HOH C 12 2012 2012 HOH HOH . HA 7 HOH C 13 2013 2013 HOH HOH . HA 7 HOH C 14 2014 2014 HOH HOH . HA 7 HOH C 15 2015 2015 HOH HOH . HA 7 HOH C 16 2016 2016 HOH HOH . IA 7 HOH D 1 2001 2001 HOH HOH . IA 7 HOH D 2 2002 2002 HOH HOH . IA 7 HOH D 3 2003 2003 HOH HOH . IA 7 HOH D 4 2004 2004 HOH HOH . IA 7 HOH D 5 2005 2005 HOH HOH . IA 7 HOH D 6 2006 2006 HOH HOH . IA 7 HOH D 7 2007 2007 HOH HOH . IA 7 HOH D 8 2008 2008 HOH HOH . IA 7 HOH D 9 2009 2009 HOH HOH . IA 7 HOH D 10 2010 2010 HOH HOH . IA 7 HOH D 11 2011 2011 HOH HOH . IA 7 HOH D 12 2012 2012 HOH HOH . IA 7 HOH D 13 2013 2013 HOH HOH . IA 7 HOH D 14 2014 2014 HOH HOH . IA 7 HOH D 15 2015 2015 HOH HOH . IA 7 HOH D 16 2016 2016 HOH HOH . JA 7 HOH E 1 2001 2001 HOH HOH . JA 7 HOH E 2 2002 2002 HOH HOH . JA 7 HOH E 3 2003 2003 HOH HOH . JA 7 HOH E 4 2004 2004 HOH HOH . JA 7 HOH E 5 2005 2005 HOH HOH . JA 7 HOH E 6 2006 2006 HOH HOH . JA 7 HOH E 7 2007 2007 HOH HOH . JA 7 HOH E 8 2008 2008 HOH HOH . JA 7 HOH E 9 2009 2009 HOH HOH . JA 7 HOH E 10 2010 2010 HOH HOH . JA 7 HOH E 11 2011 2011 HOH HOH . JA 7 HOH E 12 2012 2012 HOH HOH . JA 7 HOH E 13 2013 2013 HOH HOH . JA 7 HOH E 14 2014 2014 HOH HOH . JA 7 HOH E 15 2015 2015 HOH HOH . JA 7 HOH E 16 2016 2016 HOH HOH . JA 7 HOH E 17 2017 2017 HOH HOH . JA 7 HOH E 18 2018 2018 HOH HOH . JA 7 HOH E 19 2019 2019 HOH HOH . JA 7 HOH E 20 2020 2020 HOH HOH . JA 7 HOH E 21 2021 2021 HOH HOH . JA 7 HOH E 22 2022 2022 HOH HOH . KA 7 HOH F 1 2001 2001 HOH HOH . KA 7 HOH F 2 2002 2002 HOH HOH . KA 7 HOH F 3 2003 2003 HOH HOH . KA 7 HOH F 4 2004 2004 HOH HOH . KA 7 HOH F 5 2005 2005 HOH HOH . KA 7 HOH F 6 2006 2006 HOH HOH . KA 7 HOH F 7 2007 2007 HOH HOH . KA 7 HOH F 8 2008 2008 HOH HOH . KA 7 HOH F 9 2009 2009 HOH HOH . KA 7 HOH F 10 2010 2010 HOH HOH . KA 7 HOH F 11 2011 2011 HOH HOH . KA 7 HOH F 12 2012 2012 HOH HOH . KA 7 HOH F 13 2013 2013 HOH HOH . KA 7 HOH F 14 2014 2014 HOH HOH . KA 7 HOH F 15 2015 2015 HOH HOH . KA 7 HOH F 16 2016 2016 HOH HOH . KA 7 HOH F 17 2017 2017 HOH HOH . KA 7 HOH F 18 2018 2018 HOH HOH . KA 7 HOH F 19 2019 2019 HOH HOH . KA 7 HOH F 20 2020 2020 HOH HOH . KA 7 HOH F 21 2021 2021 HOH HOH . KA 7 HOH F 22 2022 2022 HOH HOH . KA 7 HOH F 23 2023 2023 HOH HOH . LA 7 HOH G 1 2001 2001 HOH HOH . LA 7 HOH G 2 2002 2002 HOH HOH . LA 7 HOH G 3 2003 2003 HOH HOH . LA 7 HOH G 4 2004 2004 HOH HOH . LA 7 HOH G 5 2005 2005 HOH HOH . LA 7 HOH G 6 2006 2006 HOH HOH . LA 7 HOH G 7 2007 2007 HOH HOH . LA 7 HOH G 8 2008 2008 HOH HOH . LA 7 HOH G 9 2009 2009 HOH HOH . MA 7 HOH H 1 2001 2001 HOH HOH . MA 7 HOH H 2 2002 2002 HOH HOH . MA 7 HOH H 3 2003 2003 HOH HOH . MA 7 HOH H 4 2004 2004 HOH HOH . MA 7 HOH H 5 2005 2005 HOH HOH . MA 7 HOH H 6 2006 2006 HOH HOH . MA 7 HOH H 7 2007 2007 HOH HOH . MA 7 HOH H 8 2008 2008 HOH HOH . MA 7 HOH H 9 2009 2009 HOH HOH . MA 7 HOH H 10 2010 2010 HOH HOH . MA 7 HOH H 11 2011 2011 HOH HOH . NA 7 HOH I 1 2001 2001 HOH HOH . NA 7 HOH I 2 2002 2002 HOH HOH . NA 7 HOH I 3 2003 2003 HOH HOH . NA 7 HOH I 4 2004 2004 HOH HOH . NA 7 HOH I 5 2005 2005 HOH HOH . NA 7 HOH I 6 2006 2006 HOH HOH . NA 7 HOH I 7 2007 2007 HOH HOH . NA 7 HOH I 8 2008 2008 HOH HOH . OA 7 HOH J 1 2001 2001 HOH HOH . OA 7 HOH J 2 2002 2002 HOH HOH . OA 7 HOH J 3 2003 2003 HOH HOH . OA 7 HOH J 4 2004 2004 HOH HOH . OA 7 HOH J 5 2005 2005 HOH HOH . OA 7 HOH J 6 2006 2006 HOH HOH . OA 7 HOH J 7 2007 2007 HOH HOH . OA 7 HOH J 8 2008 2008 HOH HOH . OA 7 HOH J 9 2009 2009 HOH HOH . OA 7 HOH J 10 2010 2010 HOH HOH . PA 7 HOH K 1 2001 2001 HOH HOH . PA 7 HOH K 2 2002 2002 HOH HOH . PA 7 HOH K 3 2003 2003 HOH HOH . PA 7 HOH K 4 2004 2004 HOH HOH . PA 7 HOH K 5 2005 2005 HOH HOH . PA 7 HOH K 6 2006 2006 HOH HOH . PA 7 HOH K 7 2007 2007 HOH HOH . QA 7 HOH L 1 2001 2001 HOH HOH . QA 7 HOH L 2 2002 2002 HOH HOH . QA 7 HOH L 3 2003 2003 HOH HOH . QA 7 HOH L 4 2004 2004 HOH HOH . QA 7 HOH L 5 2005 2005 HOH HOH . QA 7 HOH L 6 2006 2006 HOH HOH . QA 7 HOH L 7 2007 2007 HOH HOH . QA 7 HOH L 8 2008 2008 HOH HOH . QA 7 HOH L 9 2009 2009 HOH HOH . QA 7 HOH L 10 2010 2010 HOH HOH . QA 7 HOH L 11 2011 2011 HOH HOH . QA 7 HOH L 12 2012 2012 HOH HOH . QA 7 HOH L 13 2013 2013 HOH HOH . QA 7 HOH L 14 2014 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA NLG . . . X 3 -11.31 21.734 4.681 1 46.79 ? CA NLG 1293 F 1 HETATM 2 C C NLG . . . X 3 -12.792 22.212 4.855 1 47.03 ? C NLG 1293 F 1 HETATM 3 O OXT NLG . . . X 3 -13.683 21.713 4.115 1 47.16 ? OXT NLG 1293 F 1 HETATM 4 O O NLG . . . X 3 -13 23.092 5.717 1 47.11 ? O NLG 1293 F 1 HETATM 5 C CB NLG . . . X 3 -10.979 20.491 5.531 1 46.77 ? CB NLG 1293 F 1 HETATM 6 C CG NLG . . . X 3 -11.546 19.216 4.894 1 46.63 ? CG NLG 1293 F 1 HETATM 7 C CD NLG . . . X 3 -10.533 18.505 3.992 1 47.71 ? CD NLG 1293 F 1 HETATM 8 O OE1 NLG . . . X 3 -9.421 19.057 3.793 1 46.09 ? OE1 NLG 1293 F 1 HETATM 9 O OE2 NLG . . . X 3 -10.916 17.413 3.504 1 49.43 ? OE2 NLG 1293 F 1 HETATM 10 C C7 NLG . . . X 3 -10.231 23.906 4.316 1 44.9 ? C7 NLG 1293 F 1 HETATM 11 C C8 NLG . . . X 3 -9.386 24.913 4.754 1 44.26 ? C8 NLG 1293 F 1 HETATM 12 O O7 NLG . . . X 3 -10.779 24.045 3.238 1 42.85 ? O7 NLG 1293 F 1 HETATM 13 N N2 NLG . . . X 3 -10.409 22.834 5.072 1 46.52 ? N2 NLG 1293 F 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #