data_2V6T # _model_server_result.job_id K-LPEdmTd2PdJgGvJwKtFA _model_server_result.datetime_utc '2024-11-15 19:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1104}' # _entry.id 2V6T # _exptl.entry_id 2V6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.231 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-6-(1,2-DIHYDROXY-PROPYL)-7,8-DIHYDRO-6H-PTERIDIN-4-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2V6T _cell.length_a 119.51 _cell.length_b 119.51 _cell.length_c 49.928 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H13 N5 O3' _chem_comp.formula_weight 239.231 _chem_comp.id H2B _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-6-(1,2-DIHYDROXY-PROPYL)-7,8-DIHYDRO-6H-PTERIDIN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'QUINONOID 7,8-TETRAHYDROBIOPTERIN' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H2B sing 116 n n N1 C8A H2B doub 117 n n C2 N2 H2B sing 118 n n C2 N3 H2B doub 119 n n N2 H22 H2B sing 120 n n N2 H21 H2B sing 121 n n N3 C4 H2B sing 122 n n C4 O4 H2B doub 123 n n C4 C4A H2B sing 124 n n C4A C8A H2B sing 125 n n C4A N5 H2B doub 126 n n C8A N8 H2B sing 127 n n N5 C6 H2B sing 128 n n N8 C7 H2B sing 129 n n N8 H8 H2B sing 130 n n C6 C7 H2B sing 131 n n C6 C9 H2B sing 132 n n C6 H6 H2B sing 133 n n C7 H71 H2B sing 134 n n C7 H72 H2B sing 135 n n C9 O9 H2B sing 136 n n C9 C10 H2B sing 137 n n C9 H9 H2B sing 138 n n O9 H9O1 H2B sing 139 n n C10 C11 H2B sing 140 n n C10 O10 H2B sing 141 n n C10 H10 H2B sing 142 n n C11 H113 H2B sing 143 n n C11 H112 H2B sing 144 n n C11 H111 H2B sing 145 n n O10 H1O1 H2B sing 146 n n # _atom_sites.entry_id 2V6T _atom_sites.fract_transf_matrix[1][1] 0.008368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H2B A 1 1104 1104 H2B H2B . D 2 H2B B 1 1104 1104 H2B H2B . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1002 1002 HOH HOH . E 3 HOH A 3 1003 1003 HOH HOH . E 3 HOH A 4 1004 1004 HOH HOH . E 3 HOH A 5 1005 1005 HOH HOH . F 3 HOH B 1 1001 1001 HOH HOH . F 3 HOH B 2 1002 1002 HOH HOH . F 3 HOH B 3 1003 1003 HOH HOH . F 3 HOH B 4 1004 1004 HOH HOH . F 3 HOH B 5 1005 1005 HOH HOH . F 3 HOH B 6 1006 1006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H2B . . . C 2 16.568 39.581 10.215 1 122.16 ? N1 H2B 1104 A 1 HETATM 2 C C2 H2B . . . C 2 16.057 40.831 10.279 1 121.72 ? C2 H2B 1104 A 1 HETATM 3 N N2 H2B . . . C 2 16.575 41.803 9.555 1 121.31 ? N2 H2B 1104 A 1 HETATM 4 N N3 H2B . . . C 2 14.977 41.121 11.119 1 122.4 ? N3 H2B 1104 A 1 HETATM 5 C C4 H2B . . . C 2 14.437 40.081 11.904 1 123.56 ? C4 H2B 1104 A 1 HETATM 6 O O4 H2B . . . C 2 13.491 40.327 12.647 1 122.84 ? O4 H2B 1104 A 1 HETATM 7 C C4A H2B . . . C 2 15.011 38.797 11.86 1 122.96 ? C4A H2B 1104 A 1 HETATM 8 C C8A H2B . . . C 2 16.06 38.578 10.978 1 122.53 ? C8A H2B 1104 A 1 HETATM 9 N N5 H2B . . . C 2 14.444 37.707 12.557 1 122.82 ? N5 H2B 1104 A 1 HETATM 10 N N8 H2B . . . C 2 16.53 37.281 10.935 1 122.29 ? N8 H2B 1104 A 1 HETATM 11 C C6 H2B . . . C 2 14.598 36.412 11.986 1 124.02 ? C6 H2B 1104 A 1 HETATM 12 C C7 H2B . . . C 2 15.461 36.279 10.75 1 123.64 ? C7 H2B 1104 A 1 HETATM 13 C C9 H2B . . . C 2 13.927 35.166 12.56 1 124.84 ? C9 H2B 1104 A 1 HETATM 14 O O9 H2B . . . C 2 14.449 34.865 13.858 1 125.45 ? O9 H2B 1104 A 1 HETATM 15 C C10 H2B . . . C 2 12.382 35.463 12.514 1 124.98 ? C10 H2B 1104 A 1 HETATM 16 C C11 H2B . . . C 2 11.77 36.126 13.792 1 123.69 ? C11 H2B 1104 A 1 HETATM 17 O O10 H2B . . . C 2 11.67 34.289 12.161 1 125.19 ? O10 H2B 1104 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #