data_2V6T
#
_model_server_result.job_id            6Rq15h26LaWBeJXZTD0OQg 
_model_server_result.datetime_utc      '2024-11-15 19:24:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v6t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1104}' 
#
_entry.id    2V6T 
#
_exptl.entry_id    2V6T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              239.231 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-6-(1,2-DIHYDROXY-PROPYL)-7,8-DIHYDRO-6H-PTERIDIN-4-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2V6T 
_cell.length_a            119.51 
_cell.length_b            119.51 
_cell.length_c            49.928 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V6T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C9 H13 N5 O3' 
_chem_comp.formula_weight    239.231 
_chem_comp.id                H2B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-6-(1,2-DIHYDROXY-PROPYL)-7,8-DIHYDRO-6H-PTERIDIN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'QUINONOID 7,8-TETRAHYDROBIOPTERIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 H2B sing 116 n n 
N1 C8A H2B doub 117 n n 
C2 N2 H2B sing 118 n n 
C2 N3 H2B doub 119 n n 
N2 H22 H2B sing 120 n n 
N2 H21 H2B sing 121 n n 
N3 C4 H2B sing 122 n n 
C4 O4 H2B doub 123 n n 
C4 C4A H2B sing 124 n n 
C4A C8A H2B sing 125 n n 
C4A N5 H2B doub 126 n n 
C8A N8 H2B sing 127 n n 
N5 C6 H2B sing 128 n n 
N8 C7 H2B sing 129 n n 
N8 H8 H2B sing 130 n n 
C6 C7 H2B sing 131 n n 
C6 C9 H2B sing 132 n n 
C6 H6 H2B sing 133 n n 
C7 H71 H2B sing 134 n n 
C7 H72 H2B sing 135 n n 
C9 O9 H2B sing 136 n n 
C9 C10 H2B sing 137 n n 
C9 H9 H2B sing 138 n n 
O9 H9O1 H2B sing 139 n n 
C10 C11 H2B sing 140 n n 
C10 O10 H2B sing 141 n n 
C10 H10 H2B sing 142 n n 
C11 H113 H2B sing 143 n n 
C11 H112 H2B sing 144 n n 
C11 H111 H2B sing 145 n n 
O10 H1O1 H2B sing 146 n n 
#
_atom_sites.entry_id                     2V6T 
_atom_sites.fract_transf_matrix[1][1]    0.008368 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008368 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020029 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 H2B A 1 1104 1104 H2B H2B . 
D 2 H2B B 1 1104 1104 H2B H2B . 
E 3 HOH A 1 1001 1001 HOH HOH . 
E 3 HOH A 2 1002 1002 HOH HOH . 
E 3 HOH A 3 1003 1003 HOH HOH . 
E 3 HOH A 4 1004 1004 HOH HOH . 
E 3 HOH A 5 1005 1005 HOH HOH . 
F 3 HOH B 1 1001 1001 HOH HOH . 
F 3 HOH B 2 1002 1002 HOH HOH . 
F 3 HOH B 3 1003 1003 HOH HOH . 
F 3 HOH B 4 1004 1004 HOH HOH . 
F 3 HOH B 5 1005 1005 HOH HOH . 
F 3 HOH B 6 1006 1006 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H2B . . . D 2 24.046 35.454 -17.401 1 121.43 ? N1 H2B 1104 B 1 
HETATM 2 C C2 H2B . . . D 2 22.867 35.571 -18.065 1 121.11 ? C2 H2B 1104 B 1 
HETATM 3 N N2 H2B . . . D 2 21.731 35.356 -17.443 1 120.31 ? N2 H2B 1104 B 1 
HETATM 4 N N3 H2B . . . D 2 22.831 35.929 -19.436 1 121.98 ? N3 H2B 1104 B 1 
HETATM 5 C C4 H2B . . . D 2 24.075 36.16 -20.12 1 123.07 ? C4 H2B 1104 B 1 
HETATM 6 O O4 H2B . . . D 2 24.09 36.476 -21.321 1 122.2 ? O4 H2B 1104 B 1 
HETATM 7 C C4A H2B . . . D 2 25.276 35.999 -19.397 1 122.23 ? C4A H2B 1104 B 1 
HETATM 8 C C8A H2B . . . D 2 25.223 35.669 -18.036 1 121.76 ? C8A H2B 1104 B 1 
HETATM 9 N N5 H2B . . . D 2 26.52 36.285 -19.99 1 121.96 ? N5 H2B 1104 B 1 
HETATM 10 N N8 H2B . . . D 2 26.439 35.587 -17.377 1 121.67 ? N8 H2B 1104 B 1 
HETATM 11 C C6 H2B . . . D 2 27.568 36.694 -19.129 1 123.28 ? C6 H2B 1104 B 1 
HETATM 12 C C7 H2B . . . D 2 27.367 36.722 -17.636 1 122.83 ? C7 H2B 1104 B 1 
HETATM 13 C C9 H2B . . . D 2 28.898 37.1 -19.673 1 124.48 ? C9 H2B 1104 B 1 
HETATM 14 O O9 H2B . . . D 2 29.55 35.935 -20.188 1 125.03 ? O9 H2B 1104 B 1 
HETATM 15 C C10 H2B . . . D 2 28.572 38.231 -20.727 1 124.93 ? C10 H2B 1104 B 1 
HETATM 16 C C11 H2B . . . D 2 28.358 37.762 -22.196 1 123.44 ? C11 H2B 1104 B 1 
HETATM 17 O O10 H2B . . . D 2 29.543 39.296 -20.658 1 125.38 ? O10 H2B 1104 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           396 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#