data_2V8S
#
_model_server_result.job_id            4-t7cRAf_aizT01GEolYTA 
_model_server_result.datetime_utc      '2024-11-24 07:03:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v8s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1160}' 
#
_entry.id    2V8S 
#
_exptl.entry_id    2V8S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.09 
_cell.angle_gamma         90 
_cell.entry_id            2V8S 
_cell.length_a            102.231 
_cell.length_b            60.935 
_cell.length_c            40.998 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V8S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     2V8S 
_atom_sites.fract_transf_matrix[1][1]    0.009782 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000699 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016411 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL E 1 1159 1159 GOL GOL . 
D 3 GOL E 1 1160 1160 GOL GOL . 
E 3 GOL E 1 1161 1161 GOL GOL . 
F 3 GOL V 1 1095 1095 GOL GOL . 
G 3 GOL V 1 1096 1096 GOL GOL . 
H 4 HOH E 1 2001 2001 HOH HOH . 
H 4 HOH E 2 2002 2002 HOH HOH . 
H 4 HOH E 3 2003 2003 HOH HOH . 
H 4 HOH E 4 2004 2004 HOH HOH . 
H 4 HOH E 5 2005 2005 HOH HOH . 
H 4 HOH E 6 2006 2006 HOH HOH . 
H 4 HOH E 7 2007 2007 HOH HOH . 
H 4 HOH E 8 2008 2008 HOH HOH . 
H 4 HOH E 9 2009 2009 HOH HOH . 
H 4 HOH E 10 2010 2010 HOH HOH . 
H 4 HOH E 11 2011 2011 HOH HOH . 
H 4 HOH E 12 2012 2012 HOH HOH . 
H 4 HOH E 13 2013 2013 HOH HOH . 
H 4 HOH E 14 2014 2014 HOH HOH . 
H 4 HOH E 15 2015 2015 HOH HOH . 
H 4 HOH E 16 2016 2016 HOH HOH . 
H 4 HOH E 17 2017 2017 HOH HOH . 
H 4 HOH E 18 2018 2018 HOH HOH . 
H 4 HOH E 19 2019 2019 HOH HOH . 
H 4 HOH E 20 2020 2020 HOH HOH . 
H 4 HOH E 21 2021 2021 HOH HOH . 
H 4 HOH E 22 2022 2022 HOH HOH . 
H 4 HOH E 23 2023 2023 HOH HOH . 
H 4 HOH E 24 2024 2024 HOH HOH . 
H 4 HOH E 25 2025 2025 HOH HOH . 
H 4 HOH E 26 2026 2026 HOH HOH . 
H 4 HOH E 27 2027 2027 HOH HOH . 
H 4 HOH E 28 2028 2028 HOH HOH . 
H 4 HOH E 29 2029 2029 HOH HOH . 
H 4 HOH E 30 2030 2030 HOH HOH . 
H 4 HOH E 31 2031 2031 HOH HOH . 
H 4 HOH E 32 2032 2032 HOH HOH . 
H 4 HOH E 33 2033 2033 HOH HOH . 
H 4 HOH E 34 2034 2034 HOH HOH . 
H 4 HOH E 35 2035 2035 HOH HOH . 
H 4 HOH E 36 2036 2036 HOH HOH . 
H 4 HOH E 37 2037 2037 HOH HOH . 
H 4 HOH E 38 2038 2038 HOH HOH . 
H 4 HOH E 39 2039 2039 HOH HOH . 
H 4 HOH E 40 2040 2040 HOH HOH . 
H 4 HOH E 41 2041 2041 HOH HOH . 
H 4 HOH E 42 2042 2042 HOH HOH . 
H 4 HOH E 43 2043 2043 HOH HOH . 
H 4 HOH E 44 2044 2044 HOH HOH . 
H 4 HOH E 45 2045 2045 HOH HOH . 
H 4 HOH E 46 2046 2046 HOH HOH . 
H 4 HOH E 47 2047 2047 HOH HOH . 
H 4 HOH E 48 2048 2048 HOH HOH . 
H 4 HOH E 49 2049 2049 HOH HOH . 
H 4 HOH E 50 2050 2050 HOH HOH . 
H 4 HOH E 51 2051 2051 HOH HOH . 
H 4 HOH E 52 2052 2052 HOH HOH . 
H 4 HOH E 53 2053 2053 HOH HOH . 
H 4 HOH E 54 2054 2054 HOH HOH . 
H 4 HOH E 55 2055 2055 HOH HOH . 
H 4 HOH E 56 2056 2056 HOH HOH . 
H 4 HOH E 57 2057 2057 HOH HOH . 
H 4 HOH E 58 2058 2058 HOH HOH . 
H 4 HOH E 59 2059 2059 HOH HOH . 
I 4 HOH V 1 2001 2001 HOH HOH . 
I 4 HOH V 2 2002 2002 HOH HOH . 
I 4 HOH V 3 2003 2003 HOH HOH . 
I 4 HOH V 4 2004 2004 HOH HOH . 
I 4 HOH V 5 2005 2005 HOH HOH . 
I 4 HOH V 6 2006 2006 HOH HOH . 
I 4 HOH V 7 2007 2007 HOH HOH . 
I 4 HOH V 8 2008 2008 HOH HOH . 
I 4 HOH V 9 2009 2009 HOH HOH . 
I 4 HOH V 10 2010 2010 HOH HOH . 
I 4 HOH V 11 2011 2011 HOH HOH . 
I 4 HOH V 12 2012 2012 HOH HOH . 
I 4 HOH V 13 2013 2013 HOH HOH . 
I 4 HOH V 14 2014 2014 HOH HOH . 
I 4 HOH V 15 2015 2015 HOH HOH . 
I 4 HOH V 16 2016 2016 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 32.594 19.639 20.793 1 39.16 ? C1 GOL 1160 E 1 
HETATM 2 O O1 GOL . . . D 3 31.711 20.664 21.228 1 33.93 ? O1 GOL 1160 E 1 
HETATM 3 C C2 GOL . . . D 3 32.601 19.48 19.277 1 41.74 ? C2 GOL 1160 E 1 
HETATM 4 O O2 GOL . . . D 3 33.935 19.439 18.734 1 48.34 ? O2 GOL 1160 E 1 
HETATM 5 C C3 GOL . . . D 3 31.8 20.531 18.545 1 42.04 ? C3 GOL 1160 E 1 
HETATM 6 O O3 GOL . . . D 3 32.266 20.516 17.225 1 47.96 ? O3 GOL 1160 E 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#