data_2V8V
#
_model_server_result.job_id            3jvUwrgBOhY-u9t9o8xHbQ 
_model_server_result.datetime_utc      '2024-11-14 23:52:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v8v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1456}' 
#
_entry.id    2V8V 
#
_exptl.entry_id    2V8V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              132.118 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(AMINOCARBONYL)-BETA-ALANINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         67.45 
_cell.angle_beta          67.81 
_cell.angle_gamma         62.75 
_cell.entry_id            2V8V 
_cell.length_a            77.478 
_cell.length_b            84.903 
_cell.length_c            104.848 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V8V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,Q,R 1 1 
C,D,J,K,L,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 167 C CYS 168 1_555 L S4 DTT . C DTT 1456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc1 A NE2 HIS 113 A HIS 114 1_555 E ZN ZN . A ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc2 A OD1 ASP 124 A ASP 125 1_555 E ZN ZN . A ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc3 A OD2 ASP 124 A ASP 125 1_555 F ZN ZN . A ZN 1456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc4 A OE2 GLU 159 A GLU 160 1_555 F ZN ZN . A ZN 1456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc5 A NE2 HIS 225 A HIS 226 1_555 E ZN ZN . A ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc6 A NE2 HIS 420 A HIS 421 1_555 F ZN ZN . A ZN 1456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc7 E ZN ZN . A ZN 1455 1_555 Q O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc8 F ZN ZN . A ZN 1456 1_555 Q O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc9 B NE2 HIS 113 B HIS 114 1_555 G ZN ZN . B ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc10 B OD1 ASP 124 B ASP 125 1_555 G ZN ZN . B ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc11 B OD2 ASP 124 B ASP 125 1_555 H ZN ZN . B ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc12 B OE2 GLU 159 B GLU 160 1_555 H ZN ZN . B ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc13 B NE2 HIS 225 B HIS 226 1_555 G ZN ZN . B ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc14 B NE2 HIS 420 B HIS 421 1_555 H ZN ZN . B ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc15 G ZN ZN . B ZN 1454 1_555 R O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc16 H ZN ZN . B ZN 1455 1_555 R O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc17 C NE2 HIS 113 C HIS 114 1_555 J ZN ZN . C ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc18 C OD1 ASP 124 C ASP 125 1_555 J ZN ZN . C ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc19 C OD2 ASP 124 C ASP 125 1_555 K ZN ZN . C ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc20 C OE2 GLU 159 C GLU 160 1_555 K ZN ZN . C ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc21 C NE2 HIS 225 C HIS 226 1_555 J ZN ZN . C ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc22 C NE2 HIS 420 C HIS 421 1_555 K ZN ZN . C ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc23 J ZN ZN . C ZN 1454 1_555 S O HOH . C HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc24 K ZN ZN . C ZN 1455 1_555 S O HOH . C HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc25 D NE2 HIS 113 D HIS 114 1_555 N ZN ZN . D ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc26 D OD1 ASP 124 D ASP 125 1_555 N ZN ZN . D ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc27 D OD2 ASP 124 D ASP 125 1_555 O ZN ZN . D ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc28 D OE2 GLU 159 D GLU 160 1_555 O ZN ZN . D ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc29 D NE2 HIS 225 D HIS 226 1_555 N ZN ZN . D ZN 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc30 D NE2 HIS 420 D HIS 421 1_555 O ZN ZN . D ZN 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc31 N ZN ZN . D ZN 1454 1_555 T O HOH . D HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc32 O ZN ZN . D ZN 1455 1_555 T O HOH . D HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
#
_chem_comp.formula           'C4 H8 N2 O3' 
_chem_comp.formula_weight    132.118 
_chem_comp.id                URP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(AMINOCARBONYL)-BETA-ALANINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N-CARBAMYL-BETA-ALANINE;BETA-UREIDOPROPIONATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C2 URP doub 375 n n 
C2 N3 URP sing 376 n n 
C2 N1 URP sing 377 n n 
N3 HN31 URP sing 378 n n 
N3 HN32 URP sing 379 n n 
N1 C6 URP sing 380 n n 
N1 HN1 URP sing 381 n n 
C6 C5 URP sing 382 n n 
C6 H61 URP sing 383 n n 
C6 H62 URP sing 384 n n 
C5 C4 URP sing 385 n n 
C5 H51 URP sing 386 n n 
C5 H52 URP sing 387 n n 
C4 O42 URP sing 388 n n 
C4 O41 URP doub 389 n n 
O42 H42 URP sing 390 n n 
#
_atom_sites.entry_id                     2V8V 
_atom_sites.fract_transf_matrix[1][1]    0.012907 
_atom_sites.fract_transf_matrix[1][2]    -0.006648 
_atom_sites.fract_transf_matrix[1][3]    -0.003687 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013249 
_atom_sites.fract_transf_matrix[2][3]    -0.003505 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 1455 1455 ZN ZN . 
F 2 ZN A 1 1456 1456 ZN ZN . 
G 2 ZN B 1 1454 1454 ZN ZN . 
H 2 ZN B 1 1455 1455 ZN ZN . 
I 3 URP B 1 1456 1456 URP URP . 
J 2 ZN C 1 1454 1454 ZN ZN . 
K 2 ZN C 1 1455 1455 ZN ZN . 
L 4 DTT C 1 1456 1456 DTT DTT . 
M 3 URP C 1 1457 1457 URP URP . 
N 2 ZN D 1 1454 1454 ZN ZN . 
O 2 ZN D 1 1455 1455 ZN ZN . 
P 3 URP D 1 1456 1456 URP URP . 
Q 5 HOH A 1 2001 2001 HOH HOH . 
R 5 HOH B 1 2001 2001 HOH HOH . 
S 5 HOH C 1 2001 2001 HOH HOH . 
T 5 HOH D 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 URP . . . P 3 -38.534 10.347 -1.139 1 76.87 ? O2 URP 1456 D 1 
HETATM 2 C C2 URP . . . P 3 -39.63 10.534 -1.663 1 76.54 ? C2 URP 1456 D 1 
HETATM 3 N N3 URP . . . P 3 -40.409 11.544 -1.267 1 75.46 ? N3 URP 1456 D 1 
HETATM 4 N N1 URP . . . P 3 -40.061 9.726 -2.64 1 76.71 ? N1 URP 1456 D 1 
HETATM 5 C C6 URP . . . P 3 -41.36 9.871 -3.327 1 76.89 ? C6 URP 1456 D 1 
HETATM 6 C C5 URP . . . P 3 -41.193 10.725 -4.594 1 77.03 ? C5 URP 1456 D 1 
HETATM 7 C C4 URP . . . P 3 -41.534 9.962 -5.89 1 77.46 ? C4 URP 1456 D 1 
HETATM 8 O O42 URP . . . P 3 -41.146 8.777 -5.975 1 78.16 ? O42 URP 1456 D 1 
HETATM 9 O O41 URP . . . P 3 -42.165 10.582 -6.777 1 77.17 ? O41 URP 1456 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#