data_2V9C # _model_server_result.job_id 8glMfcgdtFIA9iORwSYDkg _model_server_result.datetime_utc '2024-11-23 09:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2v9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1214}' # _entry.id 2V9C # _exptl.entry_id 2V9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.299 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(4-DIMETHYLAMINOPHENYL)DIAZENYLBENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2V9C _cell.length_a 82.55 _cell.length_b 82.55 _cell.length_c 108.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C15 H15 N3 O2' _chem_comp.formula_weight 269.299 _chem_comp.id MRE _chem_comp.mon_nstd_flag . _chem_comp.name '2-(4-DIMETHYLAMINOPHENYL)DIAZENYLBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'METHYL RED' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRE sing 304 n y C1 C6 MRE doub 305 n y C1 N1 MRE sing 306 n n C2 C3 MRE doub 307 n y C2 C MRE sing 308 n n C3 C4 MRE sing 309 n y C4 C5 MRE doub 310 n y C5 C6 MRE sing 311 n y C1' C2' MRE sing 312 n y C1' C6' MRE doub 313 n y C1' N1' MRE sing 314 n n C2' C3' MRE doub 315 n y C3' C4' MRE sing 316 n y C4' C5' MRE doub 317 n y C4' N10 MRE sing 318 n n C5' C6' MRE sing 319 n y C OXT MRE sing 320 n n C O MRE doub 321 n n CHX N10 MRE sing 322 n n CHZ N10 MRE sing 323 n n N1 N1' MRE doub 324 n n C6 H6 MRE sing 325 n n C3 H3 MRE sing 326 n n C4 H4 MRE sing 327 n n C5 H5 MRE sing 328 n n C2' H2' MRE sing 329 n n C6' H6' MRE sing 330 n n C3' H3' MRE sing 331 n n C5' H5' MRE sing 332 n n OXT HXT MRE sing 333 n n CHX HHX1 MRE sing 334 n n CHX HHX2 MRE sing 335 n n CHX HHX3 MRE sing 336 n n CHZ HHZ1 MRE sing 337 n n CHZ HHZ2 MRE sing 338 n n CHZ HHZ3 MRE sing 339 n n # _atom_sites.entry_id 2V9C _atom_sites.fract_transf_matrix[1][1] 0.012114 _atom_sites.fract_transf_matrix[1][2] 0.006994 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 1213 1213 FMN FMN . D 3 MRE A 1 1214 1214 MRE MRE . E 4 GOL A 1 1215 1215 GOL GOL . F 4 GOL A 1 1216 1216 GOL GOL . G 2 FMN B 1 1213 1213 FMN FMN . H 3 MRE B 1 1214 1214 MRE MRE . I 4 GOL B 1 1215 1215 GOL GOL . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . J 5 HOH A 7 2007 2007 HOH HOH . J 5 HOH A 8 2008 2008 HOH HOH . J 5 HOH A 9 2009 2009 HOH HOH . J 5 HOH A 10 2010 2010 HOH HOH . J 5 HOH A 11 2011 2011 HOH HOH . J 5 HOH A 12 2012 2012 HOH HOH . J 5 HOH A 13 2013 2013 HOH HOH . J 5 HOH A 14 2014 2014 HOH HOH . J 5 HOH A 15 2015 2015 HOH HOH . J 5 HOH A 16 2016 2016 HOH HOH . J 5 HOH A 17 2017 2017 HOH HOH . J 5 HOH A 18 2018 2018 HOH HOH . J 5 HOH A 19 2019 2019 HOH HOH . J 5 HOH A 20 2020 2020 HOH HOH . J 5 HOH A 21 2021 2021 HOH HOH . J 5 HOH A 22 2022 2022 HOH HOH . J 5 HOH A 23 2023 2023 HOH HOH . J 5 HOH A 24 2024 2024 HOH HOH . J 5 HOH A 25 2025 2025 HOH HOH . J 5 HOH A 26 2026 2026 HOH HOH . J 5 HOH A 27 2027 2027 HOH HOH . J 5 HOH A 28 2028 2028 HOH HOH . J 5 HOH A 29 2029 2029 HOH HOH . J 5 HOH A 30 2030 2030 HOH HOH . J 5 HOH A 31 2031 2031 HOH HOH . J 5 HOH A 32 2032 2032 HOH HOH . J 5 HOH A 33 2033 2033 HOH HOH . J 5 HOH A 34 2034 2034 HOH HOH . J 5 HOH A 35 2035 2035 HOH HOH . J 5 HOH A 36 2036 2036 HOH HOH . J 5 HOH A 37 2037 2037 HOH HOH . J 5 HOH A 38 2038 2038 HOH HOH . J 5 HOH A 39 2039 2039 HOH HOH . J 5 HOH A 40 2040 2040 HOH HOH . J 5 HOH A 41 2041 2041 HOH HOH . J 5 HOH A 42 2042 2042 HOH HOH . J 5 HOH A 43 2043 2043 HOH HOH . J 5 HOH A 44 2044 2044 HOH HOH . J 5 HOH A 45 2045 2045 HOH HOH . J 5 HOH A 46 2046 2046 HOH HOH . J 5 HOH A 47 2047 2047 HOH HOH . J 5 HOH A 48 2048 2048 HOH HOH . J 5 HOH A 49 2049 2049 HOH HOH . J 5 HOH A 50 2050 2050 HOH HOH . J 5 HOH A 51 2051 2051 HOH HOH . J 5 HOH A 52 2052 2052 HOH HOH . J 5 HOH A 53 2053 2053 HOH HOH . J 5 HOH A 54 2054 2054 HOH HOH . J 5 HOH A 55 2055 2055 HOH HOH . J 5 HOH A 56 2056 2056 HOH HOH . J 5 HOH A 57 2057 2057 HOH HOH . J 5 HOH A 58 2058 2058 HOH HOH . J 5 HOH A 59 2059 2059 HOH HOH . J 5 HOH A 60 2060 2060 HOH HOH . J 5 HOH A 61 2061 2061 HOH HOH . J 5 HOH A 62 2062 2062 HOH HOH . J 5 HOH A 63 2063 2063 HOH HOH . J 5 HOH A 64 2064 2064 HOH HOH . J 5 HOH A 65 2065 2065 HOH HOH . J 5 HOH A 66 2066 2066 HOH HOH . J 5 HOH A 67 2067 2067 HOH HOH . J 5 HOH A 68 2068 2068 HOH HOH . J 5 HOH A 69 2069 2069 HOH HOH . J 5 HOH A 70 2070 2070 HOH HOH . J 5 HOH A 71 2071 2071 HOH HOH . J 5 HOH A 72 2072 2072 HOH HOH . J 5 HOH A 73 2073 2073 HOH HOH . J 5 HOH A 74 2074 2074 HOH HOH . J 5 HOH A 75 2075 2075 HOH HOH . J 5 HOH A 76 2076 2076 HOH HOH . K 5 HOH B 1 2001 2001 HOH HOH . K 5 HOH B 2 2002 2002 HOH HOH . K 5 HOH B 3 2003 2003 HOH HOH . K 5 HOH B 4 2004 2004 HOH HOH . K 5 HOH B 5 2005 2005 HOH HOH . K 5 HOH B 6 2006 2006 HOH HOH . K 5 HOH B 7 2007 2007 HOH HOH . K 5 HOH B 8 2008 2008 HOH HOH . K 5 HOH B 9 2009 2009 HOH HOH . K 5 HOH B 10 2010 2010 HOH HOH . K 5 HOH B 11 2011 2011 HOH HOH . K 5 HOH B 12 2012 2012 HOH HOH . K 5 HOH B 13 2013 2013 HOH HOH . K 5 HOH B 14 2014 2014 HOH HOH . K 5 HOH B 15 2015 2015 HOH HOH . K 5 HOH B 16 2016 2016 HOH HOH . K 5 HOH B 17 2017 2017 HOH HOH . K 5 HOH B 18 2018 2018 HOH HOH . K 5 HOH B 19 2019 2019 HOH HOH . K 5 HOH B 20 2020 2020 HOH HOH . K 5 HOH B 21 2021 2021 HOH HOH . K 5 HOH B 22 2022 2022 HOH HOH . K 5 HOH B 23 2023 2023 HOH HOH . K 5 HOH B 24 2024 2024 HOH HOH . K 5 HOH B 25 2025 2025 HOH HOH . K 5 HOH B 26 2026 2026 HOH HOH . K 5 HOH B 27 2027 2027 HOH HOH . K 5 HOH B 28 2028 2028 HOH HOH . K 5 HOH B 29 2029 2029 HOH HOH . K 5 HOH B 30 2030 2030 HOH HOH . K 5 HOH B 31 2031 2031 HOH HOH . K 5 HOH B 32 2032 2032 HOH HOH . K 5 HOH B 33 2033 2033 HOH HOH . K 5 HOH B 34 2034 2034 HOH HOH . K 5 HOH B 35 2035 2035 HOH HOH . K 5 HOH B 36 2036 2036 HOH HOH . K 5 HOH B 37 2037 2037 HOH HOH . K 5 HOH B 38 2038 2038 HOH HOH . K 5 HOH B 39 2039 2039 HOH HOH . K 5 HOH B 40 2040 2040 HOH HOH . K 5 HOH B 41 2041 2041 HOH HOH . K 5 HOH B 42 2042 2042 HOH HOH . K 5 HOH B 43 2043 2043 HOH HOH . K 5 HOH B 44 2044 2044 HOH HOH . K 5 HOH B 45 2045 2045 HOH HOH . K 5 HOH B 46 2046 2046 HOH HOH . K 5 HOH B 47 2047 2047 HOH HOH . K 5 HOH B 48 2048 2048 HOH HOH . K 5 HOH B 49 2049 2049 HOH HOH . K 5 HOH B 50 2050 2050 HOH HOH . K 5 HOH B 51 2051 2051 HOH HOH . K 5 HOH B 52 2052 2052 HOH HOH . K 5 HOH B 53 2053 2053 HOH HOH . K 5 HOH B 54 2054 2054 HOH HOH . K 5 HOH B 55 2055 2055 HOH HOH . K 5 HOH B 56 2056 2056 HOH HOH . K 5 HOH B 57 2057 2057 HOH HOH . K 5 HOH B 58 2058 2058 HOH HOH . K 5 HOH B 59 2059 2059 HOH HOH . K 5 HOH B 60 2060 2060 HOH HOH . K 5 HOH B 61 2061 2061 HOH HOH . K 5 HOH B 62 2062 2062 HOH HOH . K 5 HOH B 63 2063 2063 HOH HOH . K 5 HOH B 64 2064 2064 HOH HOH . K 5 HOH B 65 2065 2065 HOH HOH . K 5 HOH B 66 2066 2066 HOH HOH . K 5 HOH B 67 2067 2067 HOH HOH . K 5 HOH B 68 2068 2068 HOH HOH . K 5 HOH B 69 2069 2069 HOH HOH . K 5 HOH B 70 2070 2070 HOH HOH . K 5 HOH B 71 2071 2071 HOH HOH . K 5 HOH B 72 2072 2072 HOH HOH . K 5 HOH B 73 2073 2073 HOH HOH . K 5 HOH B 74 2074 2074 HOH HOH . K 5 HOH B 75 2075 2075 HOH HOH . K 5 HOH B 76 2076 2076 HOH HOH . K 5 HOH B 77 2077 2077 HOH HOH . K 5 HOH B 78 2078 2078 HOH HOH . K 5 HOH B 79 2079 2079 HOH HOH . K 5 HOH B 80 2080 2080 HOH HOH . K 5 HOH B 81 2081 2081 HOH HOH . K 5 HOH B 82 2082 2082 HOH HOH . K 5 HOH B 83 2083 2083 HOH HOH . K 5 HOH B 84 2084 2084 HOH HOH . K 5 HOH B 85 2085 2085 HOH HOH . K 5 HOH B 86 2086 2086 HOH HOH . K 5 HOH B 87 2087 2087 HOH HOH . K 5 HOH B 88 2088 2088 HOH HOH . K 5 HOH B 89 2089 2089 HOH HOH . K 5 HOH B 90 2090 2090 HOH HOH . K 5 HOH B 91 2091 2091 HOH HOH . K 5 HOH B 92 2092 2092 HOH HOH . K 5 HOH B 93 2093 2093 HOH HOH . K 5 HOH B 94 2094 2094 HOH HOH . K 5 HOH B 95 2095 2095 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRE . . . D 3 16.026 13.16 22.187 0.85 60.27 ? C1 MRE 1214 A 1 HETATM 2 C C2 MRE . . . D 3 16.466 13.841 23.453 0.85 62.78 ? C2 MRE 1214 A 1 HETATM 3 C C3 MRE . . . D 3 15.673 14.896 23.921 0.85 58.24 ? C3 MRE 1214 A 1 HETATM 4 C C4 MRE . . . D 3 14.52 15.3 23.213 0.85 57.63 ? C4 MRE 1214 A 1 HETATM 5 C C5 MRE . . . D 3 14.13 14.658 22.028 0.85 53 ? C5 MRE 1214 A 1 HETATM 6 C C6 MRE . . . D 3 14.889 13.605 21.503 0.85 56.76 ? C6 MRE 1214 A 1 HETATM 7 C C1' MRE . . . D 3 18.193 10.349 21.713 0.85 54.47 ? C1' MRE 1214 A 1 HETATM 8 C C2' MRE . . . D 3 17.934 9.906 20.398 0.85 45.04 ? C2' MRE 1214 A 1 HETATM 9 C C3' MRE . . . D 3 18.802 8.986 19.806 0.85 41.5 ? C3' MRE 1214 A 1 HETATM 10 C C4' MRE . . . D 3 19.918 8.547 20.51 0.85 40.42 ? C4' MRE 1214 A 1 HETATM 11 C C5' MRE . . . D 3 20.191 8.999 21.792 0.85 49.01 ? C5' MRE 1214 A 1 HETATM 12 C C6' MRE . . . D 3 19.314 9.911 22.416 0.85 49.99 ? C6' MRE 1214 A 1 HETATM 13 C C MRE . . . D 3 17.732 13.442 24.193 0.85 76.36 ? C MRE 1214 A 1 HETATM 14 C CHX MRE . . . D 3 20.7 7.122 18.646 0.85 42.99 ? CHX MRE 1214 A 1 HETATM 15 C CHZ MRE . . . D 3 22.051 7.208 20.442 0.85 48 ? CHZ MRE 1214 A 1 HETATM 16 N N1 MRE . . . D 3 16.813 12.132 21.67 0.85 63.37 ? N1 MRE 1214 A 1 HETATM 17 N N1' MRE . . . D 3 17.388 11.281 22.367 0.85 52.56 ? N1' MRE 1214 A 1 HETATM 18 O OXT MRE . . . D 3 17.96 12.222 24.767 0.85 69.02 ? OXT MRE 1214 A 1 HETATM 19 O O MRE . . . D 3 18.619 14.31 24.227 0.85 78.89 ? O MRE 1214 A 1 HETATM 20 N N10 MRE . . . D 3 20.815 7.669 19.927 0.85 51.25 ? N10 MRE 1214 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #