data_2V9P
#
_model_server_result.job_id            '_PWchCoD2HQSVHt98nMXGQ' 
_model_server_result.datetime_utc      '2025-04-16 20:20:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2v9p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":1581}' 
#
_entry.id    2V9P 
#
_exptl.entry_id    2V9P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2V9P 
_cell.length_a            135.111 
_cell.length_b            180.649 
_cell.length_c            187.533 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2V9P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS hexameric 6 author_and_software_defined_assembly 1 
PQS hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,V,W,X,KA,LA,MA,NA,OA,PA 1 1 
G,H,I,J,K,L,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,QA,RA,SA,TA,UA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 O N N 
? 3 R N N 
? 3 U N N 
? 3 AA N N 
? 3 DA N N 
? 3 GA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 140 A SER 440 1_555 O MG MG . A MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc2 M O2 PO4 . A PO4 1580 1_555 O MG MG . A MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc3 N O4 PO4 . A PO4 1581 1_555 O MG MG . A MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? 
metalc ? metalc4 B OG SER 140 B SER 440 1_555 R MG MG . B MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc5 B OD2 ASP 179 B ASP 479 1_555 R MG MG . B MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc6 P O2 PO4 . B PO4 1579 1_555 R MG MG . B MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
metalc ? metalc7 Q O4 PO4 . B PO4 1580 1_555 R MG MG . B MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
metalc ? metalc8 C OG SER 140 C SER 440 1_555 U MG MG . C MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc9 C OD2 ASP 179 C ASP 479 1_555 U MG MG . C MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc10 S O2 PO4 . C PO4 1579 1_555 U MG MG . C MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc11 T O4 PO4 . C PO4 1580 1_555 U MG MG . C MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc12 G OG SER 140 G SER 440 1_555 AA MG MG . G MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc13 Y O2 PO4 . G PO4 1579 1_555 AA MG MG . G MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc14 Z O4 PO4 . G PO4 1580 1_555 AA MG MG . G MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc15 H OG SER 140 H SER 440 1_555 DA MG MG . H MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc16 BA O2 PO4 . H PO4 1579 1_555 DA MG MG . H MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc17 CA O4 PO4 . H PO4 1580 1_555 DA MG MG . H MG 1581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc18 I OG SER 140 I SER 440 1_555 GA MG MG . I MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc19 I OD2 ASP 179 I ASP 479 1_555 GA MG MG . I MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
metalc ? metalc20 EA O2 PO4 . I PO4 1580 1_555 GA MG MG . I MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc21 FA O4 PO4 . I PO4 1581 1_555 GA MG MG . I MG 1582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2V9P 
_atom_sites.fract_transf_matrix[1][1]    0.007401 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 PO4 A 1 1580 1580 PO4 PO4 . 
N 2 PO4 A 1 1581 1581 PO4 PO4 . 
O 3 MG A 1 1582 1582 MG MG . 
P 2 PO4 B 1 1579 1579 PO4 PO4 . 
Q 2 PO4 B 1 1580 1580 PO4 PO4 . 
R 3 MG B 1 1581 1581 MG MG . 
S 2 PO4 C 1 1579 1579 PO4 PO4 . 
T 2 PO4 C 1 1580 1580 PO4 PO4 . 
U 3 MG C 1 1581 1581 MG MG . 
V 2 PO4 D 1 1580 1580 PO4 PO4 . 
W 2 PO4 E 1 1579 1579 PO4 PO4 . 
X 2 PO4 F 1 1580 1580 PO4 PO4 . 
Y 2 PO4 G 1 1579 1579 PO4 PO4 . 
Z 2 PO4 G 1 1580 1580 PO4 PO4 . 
AA 3 MG G 1 1581 1581 MG MG . 
BA 2 PO4 H 1 1579 1579 PO4 PO4 . 
CA 2 PO4 H 1 1580 1580 PO4 PO4 . 
DA 3 MG H 1 1581 1581 MG MG . 
EA 2 PO4 I 1 1580 1580 PO4 PO4 . 
FA 2 PO4 I 1 1581 1581 PO4 PO4 . 
GA 3 MG I 1 1582 1582 MG MG . 
HA 2 PO4 J 1 1578 1578 PO4 PO4 . 
IA 2 PO4 K 1 1580 1580 PO4 PO4 . 
JA 2 PO4 L 1 1579 1579 PO4 PO4 . 
KA 4 HOH A 1 2001 2001 HOH HOH . 
KA 4 HOH A 2 2002 2002 HOH HOH . 
KA 4 HOH A 3 2003 2003 HOH HOH . 
LA 4 HOH B 1 2001 2001 HOH HOH . 
LA 4 HOH B 2 2002 2002 HOH HOH . 
LA 4 HOH B 3 2003 2003 HOH HOH . 
MA 4 HOH C 1 2001 2001 HOH HOH . 
MA 4 HOH C 2 2002 2002 HOH HOH . 
MA 4 HOH C 3 2003 2003 HOH HOH . 
NA 4 HOH D 1 2001 2001 HOH HOH . 
NA 4 HOH D 2 2002 2002 HOH HOH . 
NA 4 HOH D 3 2003 2003 HOH HOH . 
NA 4 HOH D 4 2004 2004 HOH HOH . 
OA 4 HOH E 1 2001 2001 HOH HOH . 
OA 4 HOH E 2 2002 2002 HOH HOH . 
PA 4 HOH F 1 2001 2001 HOH HOH . 
PA 4 HOH F 2 2002 2002 HOH HOH . 
PA 4 HOH F 3 2003 2003 HOH HOH . 
QA 4 HOH G 1 2001 2001 HOH HOH . 
QA 4 HOH G 2 2002 2002 HOH HOH . 
QA 4 HOH G 3 2003 2003 HOH HOH . 
QA 4 HOH G 4 2004 2004 HOH HOH . 
RA 4 HOH H 1 2001 2001 HOH HOH . 
RA 4 HOH H 2 2002 2002 HOH HOH . 
RA 4 HOH H 3 2003 2003 HOH HOH . 
RA 4 HOH H 4 2004 2004 HOH HOH . 
SA 4 HOH I 1 2001 2001 HOH HOH . 
SA 4 HOH I 2 2002 2002 HOH HOH . 
SA 4 HOH I 3 2003 2003 HOH HOH . 
SA 4 HOH I 4 2004 2004 HOH HOH . 
TA 4 HOH J 1 2001 2001 HOH HOH . 
TA 4 HOH J 2 2002 2002 HOH HOH . 
TA 4 HOH J 3 2003 2003 HOH HOH . 
TA 4 HOH J 4 2004 2004 HOH HOH . 
UA 4 HOH L 1 2001 2001 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         DA 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               69.984 
_atom_site.Cartn_y               69.817 
_atom_site.Cartn_z               82.115 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        64.22 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1581 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#