data_2VA1
#
_model_server_result.job_id            -jvlypC2krg09JA89EEOHA 
_model_server_result.datetime_utc      '2024-10-19 00:54:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2va1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1236}' 
#
_entry.id    2VA1 
#
_exptl.entry_id    2VA1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.75 
_cell.angle_gamma         90 
_cell.entry_id            2VA1 
_cell.length_a            79.753 
_cell.length_b            96.552 
_cell.length_c            96.27 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VA1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 260 n n 
P O2 PO4 sing 261 n n 
P O3 PO4 sing 262 n n 
P O4 PO4 sing 263 n n 
#
_atom_sites.entry_id                     2VA1 
_atom_sites.fract_transf_matrix[1][1]    0.012539 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003536 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010357 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PO4 A 1 1236 1236 PO4 PO4 . 
H 2 PO4 B 1 1236 1236 PO4 PO4 . 
I 2 PO4 C 1 1236 1236 PO4 PO4 . 
J 2 PO4 D 1 1236 1236 PO4 PO4 . 
K 2 PO4 E 1 1236 1236 PO4 PO4 . 
L 2 PO4 F 1 1236 1236 PO4 PO4 . 
M 3 HOH A 1 2001 2001 HOH HOH . 
M 3 HOH A 2 2002 2002 HOH HOH . 
M 3 HOH A 3 2003 2003 HOH HOH . 
M 3 HOH A 4 2004 2004 HOH HOH . 
M 3 HOH A 5 2005 2005 HOH HOH . 
M 3 HOH A 6 2006 2006 HOH HOH . 
M 3 HOH A 7 2007 2007 HOH HOH . 
M 3 HOH A 8 2008 2008 HOH HOH . 
M 3 HOH A 9 2009 2009 HOH HOH . 
M 3 HOH A 10 2010 2010 HOH HOH . 
M 3 HOH A 11 2011 2011 HOH HOH . 
M 3 HOH A 12 2012 2012 HOH HOH . 
M 3 HOH A 13 2013 2013 HOH HOH . 
M 3 HOH A 14 2014 2014 HOH HOH . 
M 3 HOH A 15 2015 2015 HOH HOH . 
M 3 HOH A 16 2016 2016 HOH HOH . 
M 3 HOH A 17 2017 2017 HOH HOH . 
M 3 HOH A 18 2018 2018 HOH HOH . 
M 3 HOH A 19 2019 2019 HOH HOH . 
M 3 HOH A 20 2020 2020 HOH HOH . 
M 3 HOH A 21 2021 2021 HOH HOH . 
M 3 HOH A 22 2022 2022 HOH HOH . 
M 3 HOH A 23 2023 2023 HOH HOH . 
M 3 HOH A 24 2024 2024 HOH HOH . 
M 3 HOH A 25 2025 2025 HOH HOH . 
M 3 HOH A 26 2026 2026 HOH HOH . 
M 3 HOH A 27 2027 2027 HOH HOH . 
M 3 HOH A 28 2028 2028 HOH HOH . 
M 3 HOH A 29 2029 2029 HOH HOH . 
M 3 HOH A 30 2030 2030 HOH HOH . 
M 3 HOH A 31 2031 2031 HOH HOH . 
M 3 HOH A 32 2032 2032 HOH HOH . 
M 3 HOH A 33 2033 2033 HOH HOH . 
N 3 HOH B 1 2001 2001 HOH HOH . 
N 3 HOH B 2 2002 2002 HOH HOH . 
N 3 HOH B 3 2003 2003 HOH HOH . 
N 3 HOH B 4 2004 2004 HOH HOH . 
N 3 HOH B 5 2005 2005 HOH HOH . 
N 3 HOH B 6 2006 2006 HOH HOH . 
N 3 HOH B 7 2007 2007 HOH HOH . 
N 3 HOH B 8 2008 2008 HOH HOH . 
N 3 HOH B 9 2009 2009 HOH HOH . 
N 3 HOH B 10 2010 2010 HOH HOH . 
N 3 HOH B 11 2011 2011 HOH HOH . 
N 3 HOH B 12 2012 2012 HOH HOH . 
N 3 HOH B 13 2013 2013 HOH HOH . 
N 3 HOH B 14 2014 2014 HOH HOH . 
N 3 HOH B 15 2015 2015 HOH HOH . 
N 3 HOH B 16 2016 2016 HOH HOH . 
N 3 HOH B 17 2017 2017 HOH HOH . 
N 3 HOH B 18 2018 2018 HOH HOH . 
N 3 HOH B 19 2019 2019 HOH HOH . 
N 3 HOH B 20 2020 2020 HOH HOH . 
N 3 HOH B 21 2021 2021 HOH HOH . 
N 3 HOH B 22 2022 2022 HOH HOH . 
N 3 HOH B 23 2023 2023 HOH HOH . 
N 3 HOH B 24 2024 2024 HOH HOH . 
N 3 HOH B 25 2025 2025 HOH HOH . 
N 3 HOH B 26 2026 2026 HOH HOH . 
N 3 HOH B 27 2027 2027 HOH HOH . 
O 3 HOH C 1 2001 2001 HOH HOH . 
O 3 HOH C 2 2002 2002 HOH HOH . 
O 3 HOH C 3 2003 2003 HOH HOH . 
O 3 HOH C 4 2004 2004 HOH HOH . 
O 3 HOH C 5 2005 2005 HOH HOH . 
O 3 HOH C 6 2006 2006 HOH HOH . 
O 3 HOH C 7 2007 2007 HOH HOH . 
O 3 HOH C 8 2008 2008 HOH HOH . 
O 3 HOH C 9 2009 2009 HOH HOH . 
O 3 HOH C 10 2010 2010 HOH HOH . 
O 3 HOH C 11 2011 2011 HOH HOH . 
O 3 HOH C 12 2012 2012 HOH HOH . 
O 3 HOH C 13 2013 2013 HOH HOH . 
O 3 HOH C 14 2014 2014 HOH HOH . 
O 3 HOH C 15 2015 2015 HOH HOH . 
O 3 HOH C 16 2016 2016 HOH HOH . 
O 3 HOH C 17 2017 2017 HOH HOH . 
O 3 HOH C 18 2018 2018 HOH HOH . 
O 3 HOH C 19 2019 2019 HOH HOH . 
O 3 HOH C 20 2020 2020 HOH HOH . 
O 3 HOH C 21 2021 2021 HOH HOH . 
O 3 HOH C 22 2022 2022 HOH HOH . 
O 3 HOH C 23 2023 2023 HOH HOH . 
O 3 HOH C 24 2024 2024 HOH HOH . 
O 3 HOH C 25 2025 2025 HOH HOH . 
O 3 HOH C 26 2026 2026 HOH HOH . 
O 3 HOH C 27 2027 2027 HOH HOH . 
P 3 HOH D 1 2001 2001 HOH HOH . 
P 3 HOH D 2 2002 2002 HOH HOH . 
P 3 HOH D 3 2003 2003 HOH HOH . 
P 3 HOH D 4 2004 2004 HOH HOH . 
P 3 HOH D 5 2005 2005 HOH HOH . 
P 3 HOH D 6 2006 2006 HOH HOH . 
P 3 HOH D 7 2007 2007 HOH HOH . 
P 3 HOH D 8 2008 2008 HOH HOH . 
P 3 HOH D 9 2009 2009 HOH HOH . 
P 3 HOH D 10 2010 2010 HOH HOH . 
P 3 HOH D 11 2011 2011 HOH HOH . 
P 3 HOH D 12 2012 2012 HOH HOH . 
P 3 HOH D 13 2013 2013 HOH HOH . 
P 3 HOH D 14 2014 2014 HOH HOH . 
P 3 HOH D 15 2015 2015 HOH HOH . 
P 3 HOH D 16 2016 2016 HOH HOH . 
P 3 HOH D 17 2017 2017 HOH HOH . 
P 3 HOH D 18 2018 2018 HOH HOH . 
P 3 HOH D 19 2019 2019 HOH HOH . 
P 3 HOH D 20 2020 2020 HOH HOH . 
P 3 HOH D 21 2021 2021 HOH HOH . 
P 3 HOH D 22 2022 2022 HOH HOH . 
P 3 HOH D 23 2023 2023 HOH HOH . 
Q 3 HOH E 1 2001 2001 HOH HOH . 
Q 3 HOH E 2 2002 2002 HOH HOH . 
Q 3 HOH E 3 2003 2003 HOH HOH . 
Q 3 HOH E 4 2004 2004 HOH HOH . 
Q 3 HOH E 5 2005 2005 HOH HOH . 
Q 3 HOH E 6 2006 2006 HOH HOH . 
Q 3 HOH E 7 2007 2007 HOH HOH . 
Q 3 HOH E 8 2008 2008 HOH HOH . 
Q 3 HOH E 9 2009 2009 HOH HOH . 
Q 3 HOH E 10 2010 2010 HOH HOH . 
Q 3 HOH E 11 2011 2011 HOH HOH . 
Q 3 HOH E 12 2012 2012 HOH HOH . 
Q 3 HOH E 13 2013 2013 HOH HOH . 
Q 3 HOH E 14 2014 2014 HOH HOH . 
Q 3 HOH E 15 2015 2015 HOH HOH . 
Q 3 HOH E 16 2016 2016 HOH HOH . 
Q 3 HOH E 17 2017 2017 HOH HOH . 
Q 3 HOH E 18 2018 2018 HOH HOH . 
Q 3 HOH E 19 2019 2019 HOH HOH . 
Q 3 HOH E 20 2020 2020 HOH HOH . 
Q 3 HOH E 21 2021 2021 HOH HOH . 
Q 3 HOH E 22 2022 2022 HOH HOH . 
Q 3 HOH E 23 2023 2023 HOH HOH . 
Q 3 HOH E 24 2024 2024 HOH HOH . 
Q 3 HOH E 25 2025 2025 HOH HOH . 
Q 3 HOH E 26 2026 2026 HOH HOH . 
Q 3 HOH E 27 2027 2027 HOH HOH . 
Q 3 HOH E 28 2028 2028 HOH HOH . 
Q 3 HOH E 29 2029 2029 HOH HOH . 
Q 3 HOH E 30 2030 2030 HOH HOH . 
Q 3 HOH E 31 2031 2031 HOH HOH . 
R 3 HOH F 1 2001 2001 HOH HOH . 
R 3 HOH F 2 2002 2002 HOH HOH . 
R 3 HOH F 3 2003 2003 HOH HOH . 
R 3 HOH F 4 2004 2004 HOH HOH . 
R 3 HOH F 5 2005 2005 HOH HOH . 
R 3 HOH F 6 2006 2006 HOH HOH . 
R 3 HOH F 7 2007 2007 HOH HOH . 
R 3 HOH F 8 2008 2008 HOH HOH . 
R 3 HOH F 9 2009 2009 HOH HOH . 
R 3 HOH F 10 2010 2010 HOH HOH . 
R 3 HOH F 11 2011 2011 HOH HOH . 
R 3 HOH F 12 2012 2012 HOH HOH . 
R 3 HOH F 13 2013 2013 HOH HOH . 
R 3 HOH F 14 2014 2014 HOH HOH . 
R 3 HOH F 15 2015 2015 HOH HOH . 
R 3 HOH F 16 2016 2016 HOH HOH . 
R 3 HOH F 17 2017 2017 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . G 2 20.828 7.087 49.567 1 55.1 ? P PO4 1236 A 1 
HETATM 2 O O1 PO4 . . . G 2 19.716 8.039 49.194 1 54.75 ? O1 PO4 1236 A 1 
HETATM 3 O O2 PO4 . . . G 2 22.144 7.681 49.133 1 54.67 ? O2 PO4 1236 A 1 
HETATM 4 O O3 PO4 . . . G 2 20.601 5.756 48.893 1 54.39 ? O3 PO4 1236 A 1 
HETATM 5 O O4 PO4 . . . G 2 20.842 6.876 51.062 1 54.92 ? O4 PO4 1236 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#